BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0024.p (263 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002490268.1| cytochrome c class I [Methylobacterium nodul... 357 8e-97 ref|YP_003069955.1| cytochrome C [Methylobacterium extorquens DM... 350 9e-95 ref|YP_003066081.1| cytochrome C [Methylobacterium extorquens DM... 350 1e-94 ref|NP_771119.1| cytochrome C4 [Bradyrhizobium japonicum USDA 11... 338 4e-91 ref|YP_468519.1| cytochrome-c protein [Rhizobium etli CFN 42] >g... 313 1e-83 >ref|YP_002490268.1| cytochrome c class I [Methylobacterium nodulans ORS 2060] gb|ACL63101.1| cytochrome c class I [Methylobacterium nodulans ORS 2060] Length = 270 Score = 357 bits (917), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 168/263 (63%), Positives = 205/263 (77%) Query: 1 MSDQPLFSLRNPWFGASVGITAAIAVLSAVAGLIWLPLAQPNLKLAGVWDAICSAAGVPR 60 MSD+ L S RNPWF SVGIT A+ V++A+ G + LP AQP+LK GVWDAICSAAG+P+ Sbjct: 1 MSDEDLLSPRNPWFARSVGITVALFVVTALGGFVLLPYAQPDLKFTGVWDAICSAAGLPK 60 Query: 61 AAVQEPGIKPDFKTSNVIMTSEMLTKVNQVSIGRGATLAQRCAICHGPQGVSDAHSPNLA 120 ++PD K + V++TS + ++GRGATLAQ+CAICHGP GVS A SPNLA Sbjct: 61 TPSAAAPVQPDGKLTQVVVTSALPGAAAPEAVGRGATLAQQCAICHGPTGVSRADSPNLA 120 Query: 121 GQFAAVTYKELNDFKTGARVSVVMSPFAAAMSDQDMKDVAAYYAYLPRVPSNNLDTGRPA 180 GQ+AA YK+L DFKTGAR + +M+PFA +SD+DM D+AAYYAYLPR+P + D +PA Sbjct: 121 GQYAAAIYKQLMDFKTGARANAIMTPFAVNLSDRDMSDLAAYYAYLPRLPGFHPDRDKPA 180 Query: 181 PAIVVTGAPMRNIAPCGSCHGDVDNKAGSPWLGGQSAVYIKAQLEAFASGARRNDISQQM 240 P IV+ GAP+RNIAPCGSCHG +DNK GSPWL GQ A Y+KAQL+AFASGARRNDISQQM Sbjct: 181 PRIVINGAPLRNIAPCGSCHGALDNKTGSPWLEGQPAAYVKAQLQAFASGARRNDISQQM 240 Query: 241 RNIARQMTAEEIDQVAHYYEAQP 263 RNIAR+MT EEIDQ A +Y +QP Sbjct: 241 RNIARRMTREEIDQAAQWYASQP 263 >ref|YP_003069955.1| cytochrome C [Methylobacterium extorquens DM4] emb|CAX26130.1| putative cytochrome c [Methylobacterium extorquens DM4] Length = 270 Score = 350 bits (899), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 164/263 (62%), Positives = 204/263 (77%) Query: 1 MSDQPLFSLRNPWFGASVGITAAIAVLSAVAGLIWLPLAQPNLKLAGVWDAICSAAGVPR 60 MSD+ L S +NPWF SVGITA + +A+ G + LP AQP+LKLAG+WDAICSAAGVP+ Sbjct: 1 MSDERLLSPKNPWFIGSVGITAGLLAATALGGFVLLPYAQPDLKLAGIWDAICSAAGVPK 60 Query: 61 AAVQEPGIKPDFKTSNVIMTSEMLTKVNQVSIGRGATLAQRCAICHGPQGVSDAHSPNLA 120 A ++PD K + V++TS + + + ++GRGATLAQ+CAICHGP GVS A SPNLA Sbjct: 61 APSAAEPVRPDGKLTQVVVTSTLPSAADPDAVGRGATLAQQCAICHGPTGVSRADSPNLA 120 Query: 121 GQFAAVTYKELNDFKTGARVSVVMSPFAAAMSDQDMKDVAAYYAYLPRVPSNNLDTGRPA 180 GQ+A YK+L DFK G RV+ M+PFA +SD+DM D+AAYYAYLPR+P + + +P Sbjct: 121 GQYAPAVYKQLADFKAGVRVNATMTPFAVDLSDRDMADLAAYYAYLPRLPGFHPASDKPP 180 Query: 181 PAIVVTGAPMRNIAPCGSCHGDVDNKAGSPWLGGQSAVYIKAQLEAFASGARRNDISQQM 240 P IV+ GAP+RNIAPCGSCHG +DNK GSPWL GQ A Y+KAQL+AFASGARRNDISQQM Sbjct: 181 PRIVINGAPLRNIAPCGSCHGVLDNKTGSPWLEGQPAAYVKAQLQAFASGARRNDISQQM 240 Query: 241 RNIARQMTAEEIDQVAHYYEAQP 263 RN+AR+MT EEIDQ A +Y +QP Sbjct: 241 RNVARRMTPEEIDQAAEWYASQP 263 >ref|YP_003066081.1| cytochrome C [Methylobacterium extorquens DM4] emb|CAX22025.1| putative cytochrome c [Methylobacterium extorquens DM4] Length = 270 Score = 350 bits (899), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 164/263 (62%), Positives = 204/263 (77%) Query: 1 MSDQPLFSLRNPWFGASVGITAAIAVLSAVAGLIWLPLAQPNLKLAGVWDAICSAAGVPR 60 MSD+ L S +NPWF SVGITA + +A+ G + LP AQP+LKLAG+WDAICSAAGVP+ Sbjct: 1 MSDERLLSPKNPWFIGSVGITAGLLAATALGGFVLLPYAQPDLKLAGIWDAICSAAGVPK 60 Query: 61 AAVQEPGIKPDFKTSNVIMTSEMLTKVNQVSIGRGATLAQRCAICHGPQGVSDAHSPNLA 120 A ++PD K + V++TS + + + ++GRGATLAQ+CAICHGP GVS A SPNLA Sbjct: 61 APSAAEPVRPDGKLTQVVVTSALPSAADPDAVGRGATLAQQCAICHGPTGVSRADSPNLA 120 Query: 121 GQFAAVTYKELNDFKTGARVSVVMSPFAAAMSDQDMKDVAAYYAYLPRVPSNNLDTGRPA 180 GQ+A YK+L DFK G RV+ M+PFA +SD+DM D+AAYYAYLPR+P + + +P Sbjct: 121 GQYAPAVYKQLADFKAGVRVNATMTPFAVDLSDRDMADLAAYYAYLPRLPGFHPASDKPP 180 Query: 181 PAIVVTGAPMRNIAPCGSCHGDVDNKAGSPWLGGQSAVYIKAQLEAFASGARRNDISQQM 240 P IV+ GAP+RNIAPCGSCHG +DNK GSPWL GQ A Y+KAQL+AFASGARRNDISQQM Sbjct: 181 PRIVINGAPLRNIAPCGSCHGVLDNKTGSPWLEGQPAAYVKAQLQAFASGARRNDISQQM 240 Query: 241 RNIARQMTAEEIDQVAHYYEAQP 263 RN+AR+MT EEIDQ A +Y +QP Sbjct: 241 RNVARRMTPEEIDQAAEWYASQP 263 >ref|NP_771119.1| cytochrome C4 [Bradyrhizobium japonicum USDA 110] dbj|BAC49744.1| bll4479 [Bradyrhizobium japonicum USDA 110] Length = 272 Score = 338 bits (868), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 162/263 (61%), Positives = 201/263 (76%) Query: 1 MSDQPLFSLRNPWFGASVGITAAIAVLSAVAGLIWLPLAQPNLKLAGVWDAICSAAGVPR 60 MS + LF+ RN F VGITAA+ V++A+AG I LP AQP ++ A VWDAICSAAGVPR Sbjct: 2 MSTRDLFTFRNGHFKIGVGITAAMLVVTAIAGFIVLPFAQPWVQFANVWDAICSAAGVPR 61 Query: 61 AAVQEPGIKPDFKTSNVIMTSEMLTKVNQVSIGRGATLAQRCAICHGPQGVSDAHSPNLA 120 A + + S V++TS L++ +Q +IGRGATLAQRCAICHGP G+S A SPNLA Sbjct: 62 RAASVTAPEQSMRLSEVVLTSHTLSRPSQEAIGRGATLAQRCAICHGPTGISRADSPNLA 121 Query: 121 GQFAAVTYKELNDFKTGARVSVVMSPFAAAMSDQDMKDVAAYYAYLPRVPSNNLDTGRPA 180 GQ+AAV YKEL+DF++GAR + VMSPFA ++DQ++ D+A YYAYLPR+P+ + P Sbjct: 122 GQYAAVIYKELHDFRSGARTNAVMSPFAVNLTDQEIADLANYYAYLPRLPAYHPTPLLPK 181 Query: 181 PAIVVTGAPMRNIAPCGSCHGDVDNKAGSPWLGGQSAVYIKAQLEAFASGARRNDISQQM 240 P IV+ GAP+R IAPCG+CHG +DNK GSPWL GQS Y+KAQL+AFASG RRNDISQQM Sbjct: 182 PNIVIYGAPIRGIAPCGACHGSLDNKTGSPWLEGQSEAYMKAQLQAFASGERRNDISQQM 241 Query: 241 RNIARQMTAEEIDQVAHYYEAQP 263 RNIAR MT +EI+Q A YY +QP Sbjct: 242 RNIARAMTPQEIEQAAAYYASQP 264 >ref|YP_468519.1| cytochrome-c protein [Rhizobium etli CFN 42] gb|ABC89792.1| probable cytochrome-c protein [Rhizobium etli CFN 42] Length = 272 Score = 313 bits (803), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 149/258 (57%), Positives = 193/258 (74%), Gaps = 1/258 (0%) Query: 6 LFSLRNPWFGASVGITAAIAVLSAVAGLIWLPLAQPNLKLAGVWDAICSAAGVPRAAVQE 65 L S+RN W SV +TAA+ +++ + G + LP + ++AG+WD+IC AAG+PR Sbjct: 9 LTSVRNRWTVTSVLVTAAVFLIALLLGFVLLPRLEAGEQVAGIWDSICRAAGLPRRGEPS 68 Query: 66 PGIKPDFKTSNVIMTSEMLTKVNQVSIGRGATLAQRCAICHGPQGVSDAHSPNLAGQFAA 125 + P++KTS V +TS + N+ +IGRGATLAQ+CAICHGP GVS A SPNLAGQ+A+ Sbjct: 69 ETVMPNYKTSLVKITSAVPRGRNEDAIGRGATLAQQCAICHGPTGVSRADSPNLAGQYAS 128 Query: 126 VTYKELNDFKTGARVSVVMSPFAAAMSDQDMKDVAAYYAYLPRVPSNNLDTGRPAPAIVV 185 V YK+L DFK G RV+ VM+PFA +S++DM+D+AAYY+YLPR+P + G PAP IVV Sbjct: 129 VIYKQLRDFKDGVRVNAVMTPFAVKLSERDMQDLAAYYSYLPRLPGFH-PGGNPAPRIVV 187 Query: 186 TGAPMRNIAPCGSCHGDVDNKAGSPWLGGQSAVYIKAQLEAFASGARRNDISQQMRNIAR 245 +GAP R IAPCGSCHG ++NK GSPWL GQS +Y+K QLEAF SG+R+NDIS QMRN+AR Sbjct: 188 SGAPTRGIAPCGSCHGSIENKLGSPWLEGQSELYLKTQLEAFVSGSRQNDISSQMRNVAR 247 Query: 246 QMTAEEIDQVAHYYEAQP 263 MT EEID+ A YY QP Sbjct: 248 AMTPEEIDEAARYYANQP 265