BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0023.p (334 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772160.1| hypothetical protein bll5520 [Bradyrhizobium ja... 423 e-116 ref|YP_781274.1| hypothetical protein RPE_2354 [Rhodopseudomonas... 398 e-109 ref|YP_001241080.1| hypothetical protein BBta_5181 [Bradyrhizobi... 387 e-105 ref|YP_532972.1| hypothetical protein RPC_3111 [Rhodopseudomonas... 386 e-105 ref|NP_948727.1| hypothetical protein RPA3388 [Rhodopseudomonas ... 385 e-105 >ref|NP_772160.1| hypothetical protein bll5520 [Bradyrhizobium japonicum USDA 110] dbj|BAC50785.1| bll5520 [Bradyrhizobium japonicum USDA 110] Length = 366 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 225/346 (65%), Positives = 271/346 (78%), Gaps = 16/346 (4%) Query: 1 MAVDLFNATASAGVDPSRLKVASAIKQAAATTGTSFEYLLTTAKMESNFNPRAGATTSSA 60 M+VD +A+ +A +DPSR +VA AIKQA+ +G SF+Y+LTTAKMES+F+P AGATTSSA Sbjct: 22 MSVDNSSASQTAVLDPSRARVAGAIKQASNVSGVSFQYMLTTAKMESDFDPTAGATTSSA 81 Query: 61 HGLYQFIDQTWLGTVKEAGSQLGYGQYADAISRNSDGSYSVGDPSARAAVMKLRDDPDAA 120 HGLYQFIDQTWLGTVKEAG+QLGYG YADAI+R S G+Y+V DP + ++MKLRDDP+AA Sbjct: 82 HGLYQFIDQTWLGTVKEAGTQLGYGNYADAITRTSSGTYTVDDPVTKRSIMKLRDDPEAA 141 Query: 121 SSMAAVLTQSNSFKLTGKLGRRPTDAELYMAHFMGVGGAGKLISSAEDSPSANAAAMFPK 180 SSMAA LTQSNSFKLTG LGRRP+D+ELYMAHFMGVGGA KLI++AED+P A A +FP Sbjct: 142 SSMAAALTQSNSFKLTGLLGRRPSDSELYMAHFMGVGGAAKLIANAEDNPQAVGARLFPN 201 Query: 181 AAAANQSIFYDKSGNARSVSQVYSVLTTRYAAAANSKDTRTAFAAAGGDTMSPYAIASA- 239 AA+AN+SIFY + G ARSVS+VYSVL RYA+AANSK TR+A A GG T S +ASA Sbjct: 202 AASANRSIFYARDGRARSVSEVYSVLDARYASAANSKTTRSAMAMYGG-TPSTTQVASAN 260 Query: 240 --APTQALTMDTASYLSTFPDSRSATPVAATSA--VASAQP-APAFRSLYQAGDRSEPIS 294 PT + +D A+YL TFPD R TPV+ATS+ VA P PAFRS+YQ GD ++P+S Sbjct: 261 AVLPTTPV-IDNAAYLQTFPDVRGVTPVSATSSMTVADNTPITPAFRSIYQPGDATQPVS 319 Query: 295 PAVQELWGNSSSLT--------ASATPKVRAPGRLDLFSDPSGTYS 332 VQ+LWGN++SLT ASATP VR P LDLFSD SGT+S Sbjct: 320 TTVQKLWGNNASLTSVAPATSVASATPDVRPPQPLDLFSDRSGTFS 365 >ref|YP_781274.1| hypothetical protein RPE_2354 [Rhodopseudomonas palustris BisA53] gb|ABJ06294.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53] Length = 349 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 213/352 (60%), Positives = 263/352 (74%), Gaps = 24/352 (6%) Query: 1 MAVDLFNATASAGVDPSRLKVASAIKQAAATTGTSFEYLLTTAKMESNFNPRAGATTSSA 60 MAVD N++A+ G+ +R +VA AIKQA+ +TGTSF YLL TAKMES+FNP A ATTSSA Sbjct: 1 MAVDTANSSAT-GLTQARAQVAGAIKQASGSTGTSFSYLLATAKMESDFNPTASATTSSA 59 Query: 61 HGLYQFIDQTWLGTVKEAGSQLGYGQYADAISRNSDGSYSVGDPSARAAVMKLRDDPDAA 120 GL+QFI+QTWLGTVKEAG+Q GYGQYADAIS+++ GSYSV DP+A+AA++KLRDDP AA Sbjct: 60 KGLFQFIEQTWLGTVKEAGAQFGYGQYADAISKSASGSYSVSDPTAKAAILKLRDDPVAA 119 Query: 121 SSMAAVLTQSNSFKLTGKLGRRPTDAELYMAHFMGVGGAGKLISSAEDSPSANAAAMFPK 180 S+MA VLTQSNSF+LTG++GRRPTDAELYMAHFMGVGGA KLI++AE +PSA+ AAMFP Sbjct: 120 SAMAGVLTQSNSFQLTGQIGRRPTDAELYMAHFMGVGGATKLINAAEATPSASGAAMFPN 179 Query: 181 AAAANQSIFYDKSGNARSVSQVYSVLTTRYAAAANSKDTRTAFAAAGGDTMSPYAIASAA 240 AA AN+SIFYD++G ARSVSQVY+ L+ RY A N+ T+TA AA G +P +ASA Sbjct: 180 AAEANRSIFYDRNGTARSVSQVYADLSQRYDRAVNAPSTQTAIAAFGS---APVVLASAV 236 Query: 241 PTQ-----------ALTMDTASYLSTFPDSRSATPVAATSAV---ASAQPAPAFRSLYQA 286 P+ D A++LS+FP+ R+ P A+SA SA P FRSLYQ Sbjct: 237 PSTTATATAAATSGVTVADNAAFLSSFPNLRATPPPTASSAATDDTSASAEPLFRSLYQP 296 Query: 287 GDRSEPISPAVQELWGNSSSLTASAT------PKVRAPGRLDLFSDPSGTYS 332 G R+EP+S AVQELWGN ++LT T P +R P LDLFSD +GT+S Sbjct: 297 GTRTEPVSTAVQELWGNRAALTTDTTQALSQQPTLRVPNPLDLFSDRAGTFS 348 >ref|YP_001241080.1| hypothetical protein BBta_5181 [Bradyrhizobium sp. BTAi1] gb|ABQ37174.1| hypothetical protein BBta_5181 [Bradyrhizobium sp. BTAi1] Length = 339 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 207/340 (60%), Positives = 251/340 (73%), Gaps = 12/340 (3%) Query: 1 MAVDLFNATASAGVDPSRLKVASAIKQAAATTGTSFEYLLTTAKMESNFNPRAGATTSSA 60 M+VD N++ + +D R +VA AIKQAA + G SFEYLL+TAKMES+FNP AGA+TSSA Sbjct: 1 MSVDASNSSPTGILDGVRARVAGAIKQAADSVGASFEYLLSTAKMESDFNPTAGASTSSA 60 Query: 61 HGLYQFIDQTWLGTVKEAGSQLGYGQYADAISRNSDGSYSVGDPSARAAVMKLRDDPDAA 120 GLYQFIDQTWLGTVKEAG LGYGQYADAI++ S G Y+V DP+ R A+MKLRDDP A+ Sbjct: 61 RGLYQFIDQTWLGTVKEAGPDLGYGQYADAITKTSSGDYTVSDPAMRQAIMKLRDDPQAS 120 Query: 121 SSMAAVLTQSNSFKLTGKLGRRPTDAELYMAHFMGVGGAGKLISSAEDSPSANAAAMFPK 180 S+MAA LTQSNSF+LT K+GRRPTDAELYMAHFMGVGGA KLI+SA+++P+A+AA +FP Sbjct: 121 SAMAAALTQSNSFQLTAKIGRRPTDAELYMAHFMGVGGAAKLITSAQETPNASAAQLFPS 180 Query: 181 AAAANQSIFYDKSGNARSVSQVYSVLTTRYAAAANSKDTRTAFAAAGGDTMSPYAIASAA 240 AAAAN+SIFYD+ G ARSV QVYSVL RYA AANS TR A A GG T + A A Sbjct: 181 AAAANRSIFYDRDGQARSVGQVYSVLNARYAGAANSSTTRGALALYGGGTSANAAGGGAL 240 Query: 241 PTQALTMDTASYLSTFPDSRSATPVAATSAVASAQPA-PAFRSLYQA-GDRSEPISPAVQ 298 P T DTA++LS FPD+R + A +++PA P FRSL+Q G ++ +S V+ Sbjct: 241 P----TTDTATFLSMFPDARGSGAAVTADASRASRPADPTFRSLFQVDGQSNQAVSATVR 296 Query: 299 ELWGNSSSLTAS------ATPKVRAPGRLDLFSDPSGTYS 332 ELWG SS TA+ + A RLDLFSDPSGT+S Sbjct: 297 ELWGRSSGSTAANAAGEGSNGSASASRRLDLFSDPSGTFS 336 >ref|YP_532972.1| hypothetical protein RPC_3111 [Rhodopseudomonas palustris BisB18] gb|ABD88653.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length = 339 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 210/323 (65%), Positives = 251/323 (77%), Gaps = 23/323 (7%) Query: 25 IKQAAATTGTSFEYLLTTAKMESNFNPRAGATTSSAHGLYQFIDQTWLGTVKEAGSQLGY 84 IKQAA +TGT+F YL+TTAKMESNF+P A A+TSSA GLYQFI+QTWLGTVKEAGSQ GY Sbjct: 24 IKQAAGSTGTNFGYLVTTAKMESNFDPTAAASTSSAKGLYQFIEQTWLGTVKEAGSQFGY 83 Query: 85 GQYADAISRNSDGSYSVGDPSARAAVMKLRDDPDAASSMAAVLTQSNSFKLTGKLGRRPT 144 GQYADAI++++ G YSV DP+A+AA++KLRDDP A+S+MA VLTQSNSFKLTG++GRRPT Sbjct: 84 GQYADAITKSASGGYSVSDPAAKAAILKLRDDPVASSAMAGVLTQSNSFKLTGEIGRRPT 143 Query: 145 DAELYMAHFMGVGGAGKLISSAEDSPSANAAAMFPKAAAANQSIFYDKSGNARSVSQVYS 204 DAELYMAHFMGVGGA KLI++AE++ SA+ AA+FP AA+AN+SIFYD+ GNARSVS+VYS Sbjct: 144 DAELYMAHFMGVGGAAKLINNAENNSSASGAALFPNAASANRSIFYDRGGNARSVSEVYS 203 Query: 205 VLTTRYAAAANSKDTRTAFAAAGGDTMSPYAIASA-APTQALTMDTASYLSTFPDSRSAT 263 L +RY AANS+ T AAAGG +P +ASA AP D+A+YLS+FPD RSAT Sbjct: 204 ELASRYDQAANSQSTLATMAAAGG---APIMLASAVAPA-----DSAAYLSSFPDLRSAT 255 Query: 264 PVAATSAVASA---QPAPAFRSLYQAGDRSEPISPAVQELWGNSSSLTA----------- 309 P +A +SA Q P FRSLYQ GDR+EP+S AVQELWGN +S A Sbjct: 256 PATTATADSSATTPQYQPGFRSLYQPGDRAEPVSSAVQELWGNRASTAATTPTNSTSSAL 315 Query: 310 SATPKVRAPGRLDLFSDPSGTYS 332 S TP VR P LDLFSD +G YS Sbjct: 316 SQTPNVRPPEPLDLFSDRTGAYS 338 >ref|NP_948727.1| hypothetical protein RPA3388 [Rhodopseudomonas palustris CGA009] emb|CAE28829.1| hypothetical protein RPA3388 [Rhodopseudomonas palustris CGA009] Length = 346 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 216/350 (61%), Positives = 263/350 (75%), Gaps = 25/350 (7%) Query: 1 MAVDLFNATASAGVDPSRLKVASAIKQAAATTGTSFEYLLTTAKMESNFNPRAGATTSSA 60 MAV++ N A VDP+R KVA AIKQAA TGTSF+YLL TAKMES+FNP A ATTSSA Sbjct: 1 MAVEISNP-AVMIVDPARTKVAGAIKQAAGATGTSFQYLLATAKMESDFNPTAQATTSSA 59 Query: 61 HGLYQFIDQTWLGTVKEAGSQLGYGQYADAISRNSDGSYSVGDPSARAAVMKLRDDPDAA 120 GL+QFI+QTWLGTVKEAG+QLGYGQYAD+I+R++ GSYSV DPSARAA+M LR+DP + Sbjct: 60 QGLFQFIEQTWLGTVKEAGAQLGYGQYADSITRSASGSYSVSDPSARAAIMNLRNDPVVS 119 Query: 121 SSMAAVLTQSNSFKLTGKLGRRPTDAELYMAHFMGVGGAGKLISSAEDSPSANAAAMFPK 180 S+MA VLTQSNSFKLTG++GRRP+DAELYMAHFMGV GA KLI++A D+P+ AA+FP Sbjct: 120 SAMAGVLTQSNSFKLTGEIGRRPSDAELYMAHFMGVSGAAKLINAASDTPNVAGAALFPS 179 Query: 181 AAAANQSIFYDKSGNARSVSQVYSVLTTRYAAAANSKDTRTAFAAAGGDTMSPYAIASAA 240 AAAANQSIFYD+SGNARSVS+VYS L TRY AAAN+ T++A A+ G P +ASAA Sbjct: 180 AAAANQSIFYDRSGNARSVSEVYSNLATRYEAAANAPATQSAIASVAG---LPVTLASAA 236 Query: 241 PTQALTMDTASYLSTFPDSRSATPVAATSA--VASAQPA--PAFRSLYQAGDRSEPISPA 296 P + +D A+YL++FPD R+ TP A A A++Q A P FRSL+ GDR+EP+SPA Sbjct: 237 PQ--VPVDNAAYLASFPDVRNVTPAQAGDATRTATSQRANEPMFRSLFLGGDRAEPVSPA 294 Query: 297 VQELWGNSSSLTASA---------------TPKVRAPGRLDLFSDPSGTY 331 VQ LW + S T + TP+VR P LDLFSD +GT+ Sbjct: 295 VQSLWTSPSQTTMPSQTTMPAQTALPDLPRTPEVRTPTPLDLFSDRNGTF 344