BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0020.p         (188 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_772157.1| two-component response regulator [Bradyrhizobiu...   306   9e-82
ref|YP_532969.1| response regulator receiver domain-containing p...   297   4e-79
ref|YP_576939.1| response regulator receiver domain-containing p...   292   1e-77
ref|ZP_07028482.1| response regulator receiver protein [Afipia s...   290   7e-77
ref|ZP_01046144.1| response regulator receiver [Nitrobacter sp. ...   289   1e-76

>ref|NP_772157.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 dbj|BAC50782.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 181

 Score =  306 bits (784), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 144/152 (94%), Positives = 149/152 (98%)

Query: 8   MYRIDFNKLRFLICDDNPHMRRILRTLLHSFGAREVYEAEDGATALEMYTHYVPDIVITD 67
           M+RIDFNKLRFL+CDDNPHMRRILRTLLHSFGAREVYEAEDGATALEMY+HYVPDIVITD
Sbjct: 1   MFRIDFNKLRFLVCDDNPHMRRILRTLLHSFGAREVYEAEDGATALEMYSHYVPDIVITD 60

Query: 68  WSMPIFDGLELAQMIRQPESKGNPYAPIIMLTGHSEKRRVTVARDAGVTEFLAKPISAKG 127
           W+MPIFDGLELAQMIRQPESKGNPYAPIIMLTGHSEKRRVTVARDAGVTEFLAKPISAKG
Sbjct: 61  WAMPIFDGLELAQMIRQPESKGNPYAPIIMLTGHSEKRRVTVARDAGVTEFLAKPISAKG 120

Query: 128 LYQRIMNVVANPRPFIKTKTYFGPDRRRXRCS 159
           LYQRI+NVVANPRPFIKTKTYFGPDRRR   S
Sbjct: 121 LYQRILNVVANPRPFIKTKTYFGPDRRRNTNS 152


>ref|YP_532969.1| response regulator receiver domain-containing protein
           [Rhodopseudomonas palustris BisB18]
 gb|ABD88650.1| response regulator receiver protein [Rhodopseudomonas palustris
           BisB18]
          Length = 182

 Score =  297 bits (761), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 138/160 (86%), Positives = 147/160 (91%)

Query: 8   MYRIDFNKLRFLICDDNPHMRRILRTLLHSFGAREVYEAEDGATALEMYTHYVPDIVITD 67
           M+RIDFNKLRFL+CDDNPHMRRILRTLLHSFGAREVYEAEDGATALEMY+HY PDIVITD
Sbjct: 1   MFRIDFNKLRFLVCDDNPHMRRILRTLLHSFGAREVYEAEDGATALEMYSHYAPDIVITD 60

Query: 68  WSMPIFDGLELAQMIRQPESKGNPYAPIIMLTGHSEKRRVTVARDAGVTEFLAKPISAKG 127
           W+MPIFDGLEL QMIRQPE+KGNP+APIIMLTGHSEKRRVTVARDAGVTEFLAKPISAK 
Sbjct: 61  WAMPIFDGLELTQMIRQPEAKGNPFAPIIMLTGHSEKRRVTVARDAGVTEFLAKPISAKA 120

Query: 128 LYQRIMNVVANPRPFIKTKTYFGPDRRRXRCSKRRARPSR 167
           LYQR++NVVANPRPFIKTK YFGPDRRR   +     P R
Sbjct: 121 LYQRVLNVVANPRPFIKTKNYFGPDRRRNSAANAYIGPER 160


>ref|YP_576939.1| response regulator receiver domain-containing protein [Nitrobacter
           hamburgensis X14]
 gb|ABE62479.1| response regulator receiver domain protein (CheY-like) [Nitrobacter
           hamburgensis X14]
          Length = 181

 Score =  292 bits (748), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 137/148 (92%), Positives = 144/148 (97%)

Query: 8   MYRIDFNKLRFLICDDNPHMRRILRTLLHSFGAREVYEAEDGATALEMYTHYVPDIVITD 67
           MY IDFNKLRFL+CDDN HMRRILRTLLHSFGAREVYEAEDGATALEMYTHYVPDIVITD
Sbjct: 1   MYGIDFNKLRFLVCDDNAHMRRILRTLLHSFGAREVYEAEDGATALEMYTHYVPDIVITD 60

Query: 68  WSMPIFDGLELAQMIRQPESKGNPYAPIIMLTGHSEKRRVTVARDAGVTEFLAKPISAKG 127
           W+MPIFDG+ELAQMIRQP+SKGNP+APIIMLTGHSEKRRVTVARDAGVTEFLAKPISAKG
Sbjct: 61  WAMPIFDGIELAQMIRQPDSKGNPFAPIIMLTGHSEKRRVTVARDAGVTEFLAKPISAKG 120

Query: 128 LYQRIMNVVANPRPFIKTKTYFGPDRRR 155
           LYQRI+NVV +PRPFIKTK YFGPDRRR
Sbjct: 121 LYQRILNVVVSPRPFIKTKNYFGPDRRR 148


>ref|ZP_07028482.1| response regulator receiver protein [Afipia sp. 1NLS2]
 gb|EFI50472.1| response regulator receiver protein [Afipia sp. 1NLS2]
          Length = 181

 Score =  290 bits (742), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 135/148 (91%), Positives = 143/148 (96%)

Query: 8   MYRIDFNKLRFLICDDNPHMRRILRTLLHSFGAREVYEAEDGATALEMYTHYVPDIVITD 67
           M+RIDFNKLRFL+CDDN HMRRILRTLLHSFGAREVYEAEDGATALEMY+HYVPDIVITD
Sbjct: 1   MFRIDFNKLRFLVCDDNAHMRRILRTLLHSFGAREVYEAEDGATALEMYSHYVPDIVITD 60

Query: 68  WSMPIFDGLELAQMIRQPESKGNPYAPIIMLTGHSEKRRVTVARDAGVTEFLAKPISAKG 127
           WSMPIFDGLELAQMIRQP+  GNPYAPIIMLTGHSEKRRV  ARDAGVTEFLAKPISAKG
Sbjct: 61  WSMPIFDGLELAQMIRQPDGVGNPYAPIIMLTGHSEKRRVMTARDAGVTEFLAKPISAKG 120

Query: 128 LYQRIMNVVANPRPFIKTKTYFGPDRRR 155
           LYQRI+NVVA+PRPFI+TK+YFGPDRRR
Sbjct: 121 LYQRILNVVASPRPFIRTKSYFGPDRRR 148


>ref|ZP_01046144.1| response regulator receiver [Nitrobacter sp. Nb-311A]
 gb|EAQ35948.1| response regulator receiver [Nitrobacter sp. Nb-311A]
          Length = 181

 Score =  289 bits (740), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 135/148 (91%), Positives = 142/148 (95%)

Query: 8   MYRIDFNKLRFLICDDNPHMRRILRTLLHSFGAREVYEAEDGATALEMYTHYVPDIVITD 67
           MY IDFNKLRFL+CDDN HMRRILRTLLHSFGAREVYEAEDGATALEMYTHYVPDIVI D
Sbjct: 1   MYGIDFNKLRFLVCDDNAHMRRILRTLLHSFGAREVYEAEDGATALEMYTHYVPDIVIVD 60

Query: 68  WSMPIFDGLELAQMIRQPESKGNPYAPIIMLTGHSEKRRVTVARDAGVTEFLAKPISAKG 127
           W+MPIFDG+EL QMIRQP+SKGNP+APIIMLTGHSEKRRVTVARDAGVTEFLAKPISAKG
Sbjct: 61  WAMPIFDGIELTQMIRQPDSKGNPFAPIIMLTGHSEKRRVTVARDAGVTEFLAKPISAKG 120

Query: 128 LYQRIMNVVANPRPFIKTKTYFGPDRRR 155
           LYQRI+NVV +PRPFIKTK YFGPDRRR
Sbjct: 121 LYQRILNVVVSPRPFIKTKNYFGPDRRR 148