BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0017.p (298 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770427.1| hypothetical protein blr3787 [Bradyrhizobium ja... 411 e-113 ref|YP_569900.1| hypothetical protein RPD_2771 [Rhodopseudomonas... 398 e-109 ref|ZP_08629762.1| hypothetical protein CSIRO_2856 [Bradyrhizobi... 378 e-103 ref|YP_002289225.1| cytochrome c oxidase subunit I [Oligotropha ... 370 e-100 ref|YP_577079.1| hypothetical protein Nham_1805 [Nitrobacter ham... 370 e-100 >ref|NP_770427.1| hypothetical protein blr3787 [Bradyrhizobium japonicum USDA 110] dbj|BAC49052.1| blr3787 [Bradyrhizobium japonicum USDA 110] Length = 304 Score = 411 bits (1057), Expect = e-113, Method: Compositional matrix adjust. Identities = 232/299 (77%), Positives = 259/299 (86%), Gaps = 2/299 (0%) Query: 1 MTTVFARP--KLQLFGVSTAFVVRKISLSDLGDALRLGWEDFKAIPTHAIVLCVMYPVLG 58 M T+++ K LFG + ++ +RKI L DL + LRLGWEDF+A+P+HAIV+CV+YPVLG Sbjct: 3 MATLYSDKIVKRHLFGEAVSYPIRKIGLLDLKEVLRLGWEDFQAMPSHAIVVCVIYPVLG 62 Query: 59 LVLFRLVLGYSVLPLLFPLAAGFALIGPFAGLGLYELSRRRERGEEPGAWDAMQVLRAPS 118 LVLFR+VLGYSVLPLLFPLAAGFALIGPFA +GLYELSRRRERGEE AWDA++VLRAPS Sbjct: 63 LVLFRMVLGYSVLPLLFPLAAGFALIGPFAAIGLYELSRRRERGEEVDAWDAVKVLRAPS 122 Query: 119 FGAMFELGVLLFVLFGVWIATADAIYIMTFGYAPAASIPDFAKRVLTTPEGWSLIIVGCG 178 FGAM ELGVLL VLFGVWI A+AIY+ FG+A AASIPDFA RVLTTPEGWSLIIVGCG Sbjct: 123 FGAMLELGVLLLVLFGVWIGVANAIYVTIFGHAAAASIPDFATRVLTTPEGWSLIIVGCG 182 Query: 179 VGFLFALVALCVSVVSFPLMLDRHATAIDAIRTSIRAVMMNPIEMAARGLIVAVLLAVGS 238 VGFLFA+ ALCVSVVSFPLMLDRHATAIDAIRTS++AV NP+ MA GLIVA LL VGS Sbjct: 183 VGFLFAVAALCVSVVSFPLMLDRHATAIDAIRTSLQAVAANPVAMAGWGLIVAALLVVGS 242 Query: 239 LPFFVGLCVVLPVLGHATWHLYRKVVEPDRNPPQEEPRPPIGHRYAADFPASLFPWSRE 297 LPFFVGL VVLPVLGHATWHLYR+VVEP+ NPP E P PP G RYAADFPA+LFPWSRE Sbjct: 243 LPFFVGLAVVLPVLGHATWHLYRRVVEPNPNPPDEPPPPPKGKRYAADFPANLFPWSRE 301 >ref|YP_569900.1| hypothetical protein RPD_2771 [Rhodopseudomonas palustris BisB5] gb|ABE39999.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 300 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 199/291 (68%), Positives = 236/291 (81%), Gaps = 1/291 (0%) Query: 8 PKLQLFGVSTAFVVRKISLSDLGDALRLGWEDFKAIPTHAIVLCVMYPVLGLVLFRLVLG 67 P ++ G + VR+I+ +DL DALR GW+DFKA+P+HA+VLCV+YPVLGLVL RLVLG Sbjct: 10 PNVRPIGAAAEPPVRRIAFADLHDALRRGWDDFKAVPSHAVVLCVIYPVLGLVLARLVLG 69 Query: 68 YSVLPLLFPLAAGFALIGPFAGLGLYELSRRRERGEEPGAWDAMQVLRAPSFGAMFELGV 127 YSVLPLLFPLAAGFALIGPFA LGLYELSRRRE G++ AW A VLR+PSFGAM LG Sbjct: 70 YSVLPLLFPLAAGFALIGPFAALGLYELSRRREIGQDASAWHAFDVLRSPSFGAMLGLGA 129 Query: 128 LLFVLFGVWIATADAIYIMTFGYAPAASIPDFAKRVLTTPEGWSLIIVGCGVGFLFALVA 187 +L +F VWIATA AIY+ TFG APAA+IPDF RVLTTPEGW+LI++GCGVGFLFA+ A Sbjct: 130 MLLAVFVVWIATAQAIYVSTFGNAPAAAIPDFVTRVLTTPEGWTLIVLGCGVGFLFAVAA 189 Query: 188 LCVSVVSFPLMLDRHATAIDAIRTSIRAVMMNPIEMAARGLIVAVLLAVGSLPFFVGLCV 247 LCVSVVSFP+MLDRHA +A+ S+R V NP+EMAA GLIVA LL +GSLP F+GL V Sbjct: 190 LCVSVVSFPMMLDRHAGVGEAVAASLRVVARNPLEMAAWGLIVAALLVIGSLPAFLGLAV 249 Query: 248 VLPVLGHATWHLYRKVVEPDRNPPQEEPRPPIGHRYAADFPASLFPWSRER 298 V+P+LGHATWHLYRKV+EP+ NPP P+P R AADFPA+LF W R++ Sbjct: 250 VIPLLGHATWHLYRKVIEPNPNPP-AIPQPNPIKRSAADFPATLFQWKRDK 299 >ref|ZP_08629762.1| hypothetical protein CSIRO_2856 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07617.1| hypothetical protein CSIRO_2856 [Bradyrhizobiaceae bacterium SG-6C] Length = 300 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 188/281 (66%), Positives = 227/281 (80%), Gaps = 1/281 (0%) Query: 17 TAFVVRKISLSDLGDALRLGWEDFKAIPTHAIVLCVMYPVLGLVLFRLVLGYSVLPLLFP 76 + + V+KI + DL DALRLGW+DFKA+PTHAI+L ++YPVLG+VL R VLGYS+LPLLFP Sbjct: 19 SKYTVQKIGIDDLWDALRLGWDDFKAVPTHAILLALIYPVLGIVLARTVLGYSILPLLFP 78 Query: 77 LAAGFALIGPFAGLGLYELSRRRERGEEPGAWDAMQVLRAPSFGAMFELGVLLFVLFGVW 136 LAAGFAL+GPFA LG Y+LSRRRERGE P A A+ VLR+PS GAM GV+L +LF VW Sbjct: 79 LAAGFALLGPFAALGFYDLSRRRERGETPTASHALGVLRSPSIGAMAAFGVMLLILFLVW 138 Query: 137 IATADAIYIMTFGYAPAASIPDFAKRVLTTPEGWSLIIVGCGVGFLFALVALCVSVVSFP 196 +A A +IY TFGYAPA+S PDF RV+TT EG LI++GCGVGFLFALVALCVSVVSFP Sbjct: 139 LAAAQSIYSATFGYAPASSFPDFFNRVMTTSEGHRLIVMGCGVGFLFALVALCVSVVSFP 198 Query: 197 LMLDRHATAIDAIRTSIRAVMMNPIEMAARGLIVAVLLAVGSLPFFVGLCVVLPVLGHAT 256 LMLDRHA+A+DA+ TS+RAV NPI MA GL+VA LL G++PFF+GL VV+P+LGHAT Sbjct: 199 LMLDRHASAMDAMLTSVRAVARNPIPMAVWGLVVAALLVAGTIPFFLGLTVVIPLLGHAT 258 Query: 257 WHLYRKVVEPDRNPPQEEPRPPIGHRYAADFPASLFPWSRE 297 WHLYRKV+EP P + P+ + RYAADFP +LF W R+ Sbjct: 259 WHLYRKVIEPVAMPYEPPPQTKV-RRYAADFPVNLFTWGRK 298 >ref|YP_002289225.1| cytochrome c oxidase subunit I [Oligotropha carboxidovorans OM5] ref|YP_004632739.1| hypothetical protein OCA5_c17840 [Oligotropha carboxidovorans OM5] gb|ACI93360.1| cytochrome c oxidase subunit I [Oligotropha carboxidovorans OM5] gb|AEI02922.1| hypothetical protein OCA4_c17840 [Oligotropha carboxidovorans OM4] gb|AEI06498.1| hypothetical protein OCA5_c17840 [Oligotropha carboxidovorans OM5] Length = 301 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 181/276 (65%), Positives = 219/276 (79%) Query: 21 VRKISLSDLGDALRLGWEDFKAIPTHAIVLCVMYPVLGLVLFRLVLGYSVLPLLFPLAAG 80 VR+I +SDL +LR GWEDF A+P+HAI+L ++YPV+GL++ RLV GY +LPLLFPLAAG Sbjct: 26 VRRIQMSDLTASLRAGWEDFMALPSHAIILALIYPVIGLIVARLVHGYDILPLLFPLAAG 85 Query: 81 FALIGPFAGLGLYELSRRRERGEEPGAWDAMQVLRAPSFGAMFELGVLLFVLFGVWIATA 140 FAL+GPFA +GLYELSRRRE GE P A DA+ VL +PS GAM +GVLL +LF VWIATA Sbjct: 86 FALLGPFAAVGLYELSRRREAGESPSASDALGVLSSPSLGAMLAIGVLLMILFAVWIATA 145 Query: 141 DAIYIMTFGYAPAASIPDFAKRVLTTPEGWSLIIVGCGVGFLFALVALCVSVVSFPLMLD 200 AIY+ TFGY PAA IPDF VLTT +GW+LI+VGCGVG LFA+VALC+SVV+FPL+LD Sbjct: 146 QAIYVATFGYIPAARIPDFLGVVLTTSQGWTLILVGCGVGLLFAIVALCISVVAFPLILD 205 Query: 201 RHATAIDAIRTSIRAVMMNPIEMAARGLIVAVLLAVGSLPFFVGLCVVLPVLGHATWHLY 260 RHA+A A+ S++AV NP+ MAA GLIVA LL +GSLP F+GL VV+PVLGHATWHLY Sbjct: 206 RHASATQAMTVSMKAVAQNPVPMAAWGLIVAALLVLGSLPLFLGLAVVVPVLGHATWHLY 265 Query: 261 RKVVEPDRNPPQEEPRPPIGHRYAADFPASLFPWSR 296 R VVEP + +PP RYAADFP +L PW + Sbjct: 266 RAVVEPATETYHQPVQPPKPKRYAADFPVNLMPWIK 301 >ref|YP_577079.1| hypothetical protein Nham_1805 [Nitrobacter hamburgensis X14] gb|ABE62619.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 307 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 190/280 (67%), Positives = 220/280 (78%), Gaps = 1/280 (0%) Query: 20 VVRKISLSDLGDALRLGWEDFKAIPTHAIVLCVMYPVLGLVLFRLVLGYSVLPLLFPLAA 79 V+R I SDL DALRLGWEDFKA+P+HAIVLCV+YP+LG++L R VLGYSVLPLLFP+AA Sbjct: 24 VIRHIGFSDLLDALRLGWEDFKAVPSHAIVLCVIYPILGILLARTVLGYSVLPLLFPIAA 83 Query: 80 GFALIGPFAGLGLYELSRRRERGEEPGAWDAMQVLRAPSFGAMFELGVLLFVLFGVWIAT 139 GFALIGPFA LGLYELS RRE G+E AW A +VLRAPSFG+M LG LL +F VW+AT Sbjct: 84 GFALIGPFAALGLYELSYRRELGKEASAWHAFRVLRAPSFGSMLGLGALLLAIFAVWVAT 143 Query: 140 ADAIYIMTFGYAPAASIPDFAKRVLTTPEGWSLIIVGCGVGFLFALVALCVSVVSFPLML 199 A AIY+ TFG PA++IPDF RV TTPEGW LI+VGCGVGFLFA VALC+S+VSFPLML Sbjct: 144 AHAIYVSTFGNTPASAIPDFVTRVFTTPEGWRLIMVGCGVGFLFAAVALCISIVSFPLML 203 Query: 200 DRHATAIDAIRTSIRAVMMNPIEMAARGLIVAVLLAVGSLPFFVGLCVVLPVLGHATWHL 259 +HA DA+ TS+R V NPI A GLIVAVLL +GS+PFF+GL VV+P+LGHATWHL Sbjct: 204 HQHADMTDAMLTSMRVVAKNPIAAAEWGLIVAVLLVLGSIPFFLGLTVVMPLLGHATWHL 263 Query: 260 YRKVVE-PDRNPPQEEPRPPIGHRYAADFPASLFPWSRER 298 YRK +E P + E P I RYAADFP+ LF W R Sbjct: 264 YRKAIETPLTSASHEIPEREIEKRYAADFPSVLFQWHYWR 303