BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0016.p (277 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770425.1| cytochrome C oxidase [Bradyrhizobium japonicum ... 468 e-130 ref|YP_675023.1| cytochrome c oxidase, subunit II [Mesorhizobium... 425 e-117 ref|YP_002542449.1| cytochrome-c oxidase subunit II protein [Agr... 403 e-110 ref|NP_102719.1| cytochrome c oxidase subunit II [Mesorhizobium ... 400 e-109 gb|EGP55466.1| cytochrome-c oxidase subunit II protein [Agrobact... 395 e-108 >ref|NP_770425.1| cytochrome C oxidase [Bradyrhizobium japonicum USDA 110] sp|P98053.1|COXM_BRAJA RecName: Full=Alternative cytochrome c oxidase subunit 2; AltName: Full=Alternative cytochrome c oxidase polypeptide II; AltName: Full=Cytochrome BB3 subunit 2; AltName: Full=Oxidase BB(3) subunit 2 emb|CAA48547.1| cytochrome-c oxidase [Bradyrhizobium japonicum] dbj|BAC49050.1| cytochrome C oxidase [Bradyrhizobium japonicum USDA 110] Length = 277 Score = 468 bits (1204), Expect = e-130, Method: Compositional matrix adjust. Identities = 210/277 (75%), Positives = 246/277 (88%) Query: 1 MAVAILLLLVAVASVLFHLYSPWWWTPIASNWSYIDHTINLTFWITGAVFCAVIVFMAYC 60 MAVA++LLL+A+ SVLFHL+SPWWWTPIA+NW YID TIN+TFWITG VF AVI+FMAYC Sbjct: 1 MAVALILLLIAIGSVLFHLFSPWWWTPIATNWGYIDDTINITFWITGFVFTAVILFMAYC 60 Query: 61 VLRFHHTEGRRAHYNPENKKLEWWLSIGTAIGVVAMLAPGLVVWHQFVTVPDDATDVEVV 120 V RFHH EGR+A YNPENKKLEWWLS+GT +GV AMLAPGLVVWHQFVTVP DAT+VE++ Sbjct: 61 VFRFHHKEGRQAAYNPENKKLEWWLSVGTGVGVAAMLAPGLVVWHQFVTVPADATEVEIM 120 Query: 121 GQQWMWSYRLPGKDGRLGTSDARLISSDNPLGLNPNDPNGQDDIVVQNEDLHLPVGKPVK 180 GQQW WS+RLPGKDGRLGTSD R IS +NP+GLN +DP+GQDD+V++N DLHLP+GKPVK Sbjct: 121 GQQWQWSFRLPGKDGRLGTSDVRNISPENPMGLNRDDPHGQDDVVIENGDLHLPIGKPVK 180 Query: 181 VLLRSIDVLHDFYVPEFRAKMDMIPGSVTYYWLTPTRTGTFDVLCAELCGAAHAQMRSKV 240 VLLRS+DVLHDFYVPEFRAKMDM+PG VTY+W+ P RTGTFDVLCAELCGAAH QMR+KV Sbjct: 181 VLLRSVDVLHDFYVPEFRAKMDMVPGMVTYFWIRPIRTGTFDVLCAELCGAAHYQMRAKV 240 Query: 241 VVEEEKEYHAWLDKQHTFAALSGQRNVAKAAYKTGSE 277 +VE E +YHAWL++Q TFA LSG+ V +A Y +G + Sbjct: 241 IVEAESDYHAWLEQQKTFAGLSGRNAVVRAKYNSGDD 277 >ref|YP_675023.1| cytochrome c oxidase, subunit II [Mesorhizobium sp. BNC1] gb|ABG63858.1| cytochrome c oxidase, subunit II [Chelativorans sp. BNC1] Length = 273 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 192/269 (71%), Positives = 229/269 (85%) Query: 1 MAVAILLLLVAVASVLFHLYSPWWWTPIASNWSYIDHTINLTFWITGAVFCAVIVFMAYC 60 M A +L+LV + S+LFH+ SPWWW PIASNWSYIDHT+ +TFWITGAVF AV++FMAYC Sbjct: 1 MVPAFILVLVVLGSILFHILSPWWWPPIASNWSYIDHTLVITFWITGAVFSAVVLFMAYC 60 Query: 61 VLRFHHTEGRRAHYNPENKKLEWWLSIGTAIGVVAMLAPGLVVWHQFVTVPDDATDVEVV 120 V RF H G +A Y PE+KKLEWWL+IGTA+GV AMLAPGL VW QFVTVPDDAT++EVV Sbjct: 61 VYRFRHRPGSKAAYEPESKKLEWWLTIGTAVGVAAMLAPGLYVWAQFVTVPDDATEIEVV 120 Query: 121 GQQWMWSYRLPGKDGRLGTSDARLISSDNPLGLNPNDPNGQDDIVVQNEDLHLPVGKPVK 180 QQW W+YRLPG+DGRLG SD++LIS +NPLG+NP+DPNGQDDIV++ DLHLPV KPVK Sbjct: 121 AQQWQWNYRLPGEDGRLGKSDSQLISFENPLGINPDDPNGQDDIVIEASDLHLPVDKPVK 180 Query: 181 VLLRSIDVLHDFYVPEFRAKMDMIPGSVTYYWLTPTRTGTFDVLCAELCGAAHAQMRSKV 240 VLLRSIDVLHDFYVPEFRAKMDM+PG VTY+W TPT+TGT++VLCAELCG H+ MR V Sbjct: 181 VLLRSIDVLHDFYVPEFRAKMDMVPGMVTYFWFTPTKTGTYEVLCAELCGVGHSYMRGAV 240 Query: 241 VVEEEKEYHAWLDKQHTFAALSGQRNVAK 269 +V+ E++Y AWL +Q TFA L+ RNVA+ Sbjct: 241 LVDTEEDYQAWLQEQSTFAELTDLRNVAE 269 >ref|YP_002542449.1| cytochrome-c oxidase subunit II protein [Agrobacterium radiobacter K84] gb|ACM30852.1| cytochrome-c oxidase subunit II protein [Agrobacterium radiobacter K84] Length = 271 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 185/259 (71%), Positives = 212/259 (81%), Gaps = 2/259 (0%) Query: 13 ASVLFHLYSPWWWTPIASNWSYIDHTINLTFWITGAVFCAVIVFMAYCVLRFHHTEGRRA 72 S+ FHL SPWWWTPIASNWSYID+TI +TFWITG VF AV++FMAYCVLRF H G +A Sbjct: 13 GSIAFHLLSPWWWTPIASNWSYIDNTIVITFWITGFVFAAVVLFMAYCVLRFRHRAGNQA 72 Query: 73 HYNPENKKLEWWLSIGTAIGVVAMLAPGLVVWHQFVTVPDDATDVEVVGQQWMWSYRLPG 132 Y PENK+LEWWL+ GTAIGV AMLAPGL VW QFVTVP DA+ VEVVGQQW WS+RLPG Sbjct: 73 AYQPENKRLEWWLAGGTAIGVAAMLAPGLFVWKQFVTVPTDASQVEVVGQQWQWSFRLPG 132 Query: 133 KDGRLGTSDARLISSDNPLGLNPNDPNGQDDIVVQNEDLHLPVGKPVKVLLRSIDVLHDF 192 DGRLG +D R ++ DNPLGLN NDP+G DD++VQ +LHLP GKPVK+LLRSIDVLHDF Sbjct: 133 ADGRLGRADTRDVTPDNPLGLNKNDPSGMDDVIVQGGELHLPAGKPVKMLLRSIDVLHDF 192 Query: 193 YVPEFRAKMDMIPGSVTYYWLTPTRTGTFDVLCAELCGAAHAQMRSKVVVEEEKEYHAWL 252 YVPEFRAKMDMIPG+VTYYW TPTRTGTF+VLCAELCG H QMR V+V+ E Y AWL Sbjct: 193 YVPEFRAKMDMIPGTVTYYWFTPTRTGTFEVLCAELCGVGHPQMRGTVIVDTETAYQAWL 252 Query: 253 DKQHTFAA--LSGQRNVAK 269 +Q TF+ S +++ AK Sbjct: 253 QQQPTFSQSLASAEKSAAK 271 >ref|NP_102719.1| cytochrome c oxidase subunit II [Mesorhizobium loti MAFF303099] dbj|BAB48505.1| cytochrome c oxidase subunit II [Mesorhizobium loti MAFF303099] Length = 294 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 182/259 (70%), Positives = 212/259 (81%) Query: 17 FHLYSPWWWTPIASNWSYIDHTINLTFWITGAVFCAVIVFMAYCVLRFHHTEGRRAHYNP 76 FHL SPWWWTPIASNW+YID+TI +TFWITG VF AV++FMAYCV RF H EG RA Y P Sbjct: 17 FHLLSPWWWTPIASNWAYIDNTIIITFWITGVVFAAVVLFMAYCVFRFRHREGNRAAYEP 76 Query: 77 ENKKLEWWLSIGTAIGVVAMLAPGLVVWHQFVTVPDDATDVEVVGQQWMWSYRLPGKDGR 136 ENK+LE WL+I TA+GV A+L PGL VW +FVTVP DAT+VEV+GQQW WS+RLPGKDG+ Sbjct: 77 ENKRLESWLTIVTAVGVTALLVPGLFVWSRFVTVPRDATEVEVIGQQWQWSFRLPGKDGK 136 Query: 137 LGTSDARLISSDNPLGLNPNDPNGQDDIVVQNEDLHLPVGKPVKVLLRSIDVLHDFYVPE 196 LGTSD R + +DNPLG+ P+DPNG+DD+VV+ DLHLPVGKPVK+LLRSIDVLHDFYVPE Sbjct: 137 LGTSDTRDVGADNPLGIIPSDPNGRDDVVVEAADLHLPVGKPVKMLLRSIDVLHDFYVPE 196 Query: 197 FRAKMDMIPGSVTYYWLTPTRTGTFDVLCAELCGAAHAQMRSKVVVEEEKEYHAWLDKQH 256 FRAKMDMIPGSVTY+W TPTRTGTF VLCAELCG H M V+V+ +++Y AWL +Q Sbjct: 197 FRAKMDMIPGSVTYFWFTPTRTGTFQVLCAELCGQGHPMMHGVVMVDTQEDYVAWLGQQQ 256 Query: 257 TFAALSGQRNVAKAAYKTG 275 TFA LS + A TG Sbjct: 257 TFAQLSAPKQTGSADETTG 275 >gb|EGP55466.1| cytochrome-c oxidase subunit II protein [Agrobacterium tumefaciens F2] Length = 271 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 183/259 (70%), Positives = 214/259 (82%) Query: 1 MAVAILLLLVAVASVLFHLYSPWWWTPIASNWSYIDHTINLTFWITGAVFCAVIVFMAYC 60 MAV ++L+L+ V S+ FHL SPWWWTPIASNWSYID+TI +TFWITG VF AV++F+AYC Sbjct: 1 MAVVVVLVLLVVGSIAFHLLSPWWWTPIASNWSYIDNTIIITFWITGFVFSAVVLFVAYC 60 Query: 61 VLRFHHTEGRRAHYNPENKKLEWWLSIGTAIGVVAMLAPGLVVWHQFVTVPDDATDVEVV 120 V RF H G RA Y PENK+LEWWL+ GT IGV AML PGL VW QFVTVPD A++VE+V Sbjct: 61 VFRFRHRPGNRAAYQPENKRLEWWLAGGTGIGVAAMLLPGLFVWKQFVTVPDGASEVEIV 120 Query: 121 GQQWMWSYRLPGKDGRLGTSDARLISSDNPLGLNPNDPNGQDDIVVQNEDLHLPVGKPVK 180 GQQW WS+RLPG DGRLG +D R I+ DNPLGLN NDP G DD++++ +LHLP G+PVK Sbjct: 121 GQQWQWSFRLPGADGRLGRADTRAITPDNPLGLNRNDPAGMDDVIIEGGELHLPAGRPVK 180 Query: 181 VLLRSIDVLHDFYVPEFRAKMDMIPGSVTYYWLTPTRTGTFDVLCAELCGAAHAQMRSKV 240 +LLR+IDV+HDFYVPEFRAKMDMIPGSVTYYW TPTRTGTF+VLCAELCG H QMR V Sbjct: 181 MLLRAIDVVHDFYVPEFRAKMDMIPGSVTYYWFTPTRTGTFEVLCAELCGVGHPQMRGTV 240 Query: 241 VVEEEKEYHAWLDKQHTFA 259 VV+ E +Y AWL +Q TFA Sbjct: 241 VVDSEADYQAWLQQQPTFA 259