BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0015.p (488 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770424.1| cytochrome C oxidase [Bradyrhizobium japonicum ... 858 0.0 ref|NP_102720.1| cytochrome c oxidase subunit I [Mesorhizobium l... 812 0.0 ref|YP_002827063.1| cytochrome c oxidase polypeptide I/III [Sino... 806 0.0 ref|YP_004549894.1| cytochrome c oxidase subunit I [Sinorhizobiu... 804 0.0 ref|NP_386623.1| alternative cytochrome C oxidase polypeptide I ... 804 0.0 >ref|NP_770424.1| cytochrome C oxidase [Bradyrhizobium japonicum USDA 110] sp|P98000.1|COXN_BRAJA RecName: Full=Alternative cytochrome c oxidase subunit 1; AltName: Full=Alternative cytochrome c oxidase polypeptide I; AltName: Full=Cytochrome BB3 subunit 1; AltName: Full=Oxidase BB(3) subunit 1 emb|CAA48548.1| cytochrome-c oxidase [Bradyrhizobium japonicum] dbj|BAC49049.1| cytochrome C oxidase [Bradyrhizobium japonicum USDA 110] Length = 591 Score = 858 bits (2216), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/460 (93%), Positives = 449/460 (97%) Query: 1 MVDIPFDQVAGIPPAEVGEVELYHPHSWWTRYVFSQDAKVIAVQYSITAMSIGMVALVLS 60 MVD+P+D++A IPPAEV +VELYHP SWWTRYVFSQDAKVIA+QYS+TA +IG+VALVLS Sbjct: 1 MVDVPYDRIADIPPAEVPDVELYHPRSWWTRYVFSQDAKVIAIQYSLTASAIGLVALVLS 60 Query: 61 WMMRLQLGFPGTFSFIDANQYLQFITMHGMIMVIYLLTALFLGGFGNYLIPLMVGARDMV 120 W+MRLQLGFPGTFSFIDANQYLQFITMHGMIMVIYLLTALFLGGFGNYLIPLMVGARDMV Sbjct: 61 WLMRLQLGFPGTFSFIDANQYLQFITMHGMIMVIYLLTALFLGGFGNYLIPLMVGARDMV 120 Query: 121 FPYVNMLSYWVYLLAVLVLAATFFVPGGPTGAGWTLYPPQAILSGTPGQDWGIVLMLASL 180 FPYVNMLSYWVYLLAVLVLA+ FFVPGGPTGAGWTLYPPQAILSGTPGQDWGIVLML+SL Sbjct: 121 FPYVNMLSYWVYLLAVLVLASAFFVPGGPTGAGWTLYPPQAILSGTPGQDWGIVLMLSSL 180 Query: 181 ILFIIGFTMGGLNYVVTVLQARTRGMTLMRMPLTVWGIFTATVMALLAFPALFVASVMLL 240 ILFIIGFTMGGLNYVVTVLQARTRGMTLMR+PLTVWGIFTATVMALLAFPALFV SVMLL Sbjct: 181 ILFIIGFTMGGLNYVVTVLQARTRGMTLMRLPLTVWGIFTATVMALLAFPALFVGSVMLL 240 Query: 241 LDRLLGTSFFMPTLVEMGQLTKYGGGSPILFQHLFWFFGHPEVYIVALPAFGIISDLIST 300 LDRLLGTSFFMPTLVEMGQL+KYGGGSP+LFQHLFWFFGHPEVYIVALPAFGI+SDLIST Sbjct: 241 LDRLLGTSFFMPTLVEMGQLSKYGGGSPLLFQHLFWFFGHPEVYIVALPAFGIVSDLIST 300 Query: 301 HARKNIFGYRMMVWAIVAIGALSFVVWAHHMYVSGMHPYFGFFFATTTLIIAIPTAIKVY 360 HARKNIFGYRMMVWAIVAIGALSFVVWAHHMYVSGM+PYFGFFFATTTLIIAIPTAIKVY Sbjct: 301 HARKNIFGYRMMVWAIVAIGALSFVVWAHHMYVSGMYPYFGFFFATTTLIIAIPTAIKVY 360 Query: 361 NWVLTLWRGDIHLTVPMLFALGFIVTFVNGGLTGLFLGNVVVDVPLSDTMFVVAHFHMVM 420 NWVLTLW GDIHLTVPMLFALGFI+TFVNGGLTGLFLGNVVVDVPLSDTMFVVAHFHMVM Sbjct: 361 NWVLTLWHGDIHLTVPMLFALGFIITFVNGGLTGLFLGNVVVDVPLSDTMFVVAHFHMVM 420 Query: 421 GIAPIMAVFGGIYHWYPKVTGRMLNDALGRFHFWVTFIGA 460 G+APIM V G IYHWYPKVTGRMLND LG+FHFWVTF+GA Sbjct: 421 GVAPIMVVLGAIYHWYPKVTGRMLNDVLGKFHFWVTFLGA 460 >ref|NP_102720.1| cytochrome c oxidase subunit I [Mesorhizobium loti MAFF303099] dbj|BAB48506.1| cytochrome c oxidase subunit I [Mesorhizobium loti MAFF303099] Length = 589 Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/462 (88%), Positives = 434/462 (93%), Gaps = 5/462 (1%) Query: 1 MVDI-PFDQVAGIPPAEVGEVELYHPHSWWTRYVFSQDAKVIAVQYSITAMSIGMVALVL 59 MVDI P D GIPPAEV EVELYHPHSWWT+YVFSQDAKVIAVQYS TA +IG+VALVL Sbjct: 1 MVDITPAD---GIPPAEVAEVELYHPHSWWTKYVFSQDAKVIAVQYSATATAIGLVALVL 57 Query: 60 SWMMRLQLGFPGTFSFIDANQYLQFITMHGMIMVIYLLTALFLGGFGNYLIPLMVGARDM 119 SW+MRLQLGFPGTF FI Y QFITMHGMIMVIYLLTALFLGGFGNYLIPLMVGARDM Sbjct: 58 SWLMRLQLGFPGTFDFITPEAYYQFITMHGMIMVIYLLTALFLGGFGNYLIPLMVGARDM 117 Query: 120 VFPYVNMLSYWVYLLAVLVLAATFFVPGGPTGAGWTLYPPQAILSGTPG-QDWGIVLMLA 178 VFPYVNMLSYW+YLLAVLVL ++FF PGGPTGAGWTLYPPQAI+SGTPG QDWGI+LML+ Sbjct: 118 VFPYVNMLSYWIYLLAVLVLVSSFFAPGGPTGAGWTLYPPQAIMSGTPGGQDWGIILMLS 177 Query: 179 SLILFIIGFTMGGLNYVVTVLQARTRGMTLMRMPLTVWGIFTATVMALLAFPALFVASVM 238 SLILFIIGFTMGGLNYVVTVLQ RTRGMT+MR+PLTVWGIFTATVMALLAFPALFVASVM Sbjct: 178 SLILFIIGFTMGGLNYVVTVLQGRTRGMTMMRLPLTVWGIFTATVMALLAFPALFVASVM 237 Query: 239 LLLDRLLGTSFFMPTLVEMGQLTKYGGGSPILFQHLFWFFGHPEVYIVALPAFGIISDLI 298 +LLDR+LGTSFFMP + EMG+ ++ GGSPILFQHLFWFFGHPEVYIVALPAFGI+SDLI Sbjct: 238 MLLDRVLGTSFFMPAISEMGEQLQHNGGSPILFQHLFWFFGHPEVYIVALPAFGIVSDLI 297 Query: 299 STHARKNIFGYRMMVWAIVAIGALSFVVWAHHMYVSGMHPYFGFFFATTTLIIAIPTAIK 358 STHARKNIFGYRMMVWAIV IGALSFVVWAHHMYVSGMHPYFGFFFATTTLIIAIPTAIK Sbjct: 298 STHARKNIFGYRMMVWAIVGIGALSFVVWAHHMYVSGMHPYFGFFFATTTLIIAIPTAIK 357 Query: 359 VYNWVLTLWRGDIHLTVPMLFALGFIVTFVNGGLTGLFLGNVVVDVPLSDTMFVVAHFHM 418 VYNWVLTLWRGDIHLT+PMLFAL FIVTFVNGGLTGLFLGNVVVDVPLSDTMFVVAHFHM Sbjct: 358 VYNWVLTLWRGDIHLTIPMLFALAFIVTFVNGGLTGLFLGNVVVDVPLSDTMFVVAHFHM 417 Query: 419 VMGIAPIMAVFGGIYHWYPKVTGRMLNDALGRFHFWVTFIGA 460 VMG+API+ VFG IYHWYPKVTGRML++ LGRFHFWVTF+GA Sbjct: 418 VMGVAPILVVFGAIYHWYPKVTGRMLDETLGRFHFWVTFLGA 459 >ref|YP_002827063.1| cytochrome c oxidase polypeptide I/III [Sinorhizobium fredii NGR234] gb|ACP26310.1| cytochrome c oxidase polypeptide I/III [Sinorhizobium fredii NGR234] Length = 593 Score = 806 bits (2082), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/461 (86%), Positives = 432/461 (93%), Gaps = 1/461 (0%) Query: 1 MVDIPFDQVAGIPPAEVGEVELYHPHSWWTRYVFSQDAKVIAVQYSITAMSIGMVALVLS 60 MVD+ +PP EV +VELYHPHSWWT+YVFSQDAK+IA+QY+ TA++IGMVALVLS Sbjct: 2 MVDVRSGIGEALPPPEVEDVELYHPHSWWTKYVFSQDAKIIAIQYATTAIAIGMVALVLS 61 Query: 61 WMMRLQLGFPGTFSFIDANQYLQFITMHGMIMVIYLLTALFLGGFGNYLIPLMVGARDMV 120 W+MRLQLGFPGTF FIDA+ Y QFITMHGMIMVIYLLTALFLGGFGNYLIPLMVGARDMV Sbjct: 62 WLMRLQLGFPGTFDFIDAHAYYQFITMHGMIMVIYLLTALFLGGFGNYLIPLMVGARDMV 121 Query: 121 FPYVNMLSYWVYLLAVLVLAATFFVPGGPTGAGWTLYPPQAILSGTPG-QDWGIVLMLAS 179 FPY NMLSYW+YLLAVLVL A+FF PGGPTGAGWTLYPPQA+LSGTPG +DWGI+LML+S Sbjct: 122 FPYANMLSYWIYLLAVLVLVASFFAPGGPTGAGWTLYPPQAVLSGTPGGKDWGIILMLSS 181 Query: 180 LILFIIGFTMGGLNYVVTVLQARTRGMTLMRMPLTVWGIFTATVMALLAFPALFVASVML 239 LI+FIIGFTMGGLNYVVTVLQ R RGMTLMR+PLTVWGIFTATVMALLAFPALFVA VM+ Sbjct: 182 LIIFIIGFTMGGLNYVVTVLQGRARGMTLMRLPLTVWGIFTATVMALLAFPALFVACVMM 241 Query: 240 LLDRLLGTSFFMPTLVEMGQLTKYGGGSPILFQHLFWFFGHPEVYIVALPAFGIISDLIS 299 L DRLLGTSFFMP +VEMG+ ++GGGSPILFQHLFWFFGHPEVYIVALPAFGI+SDLIS Sbjct: 242 LFDRLLGTSFFMPAIVEMGEQLQHGGGSPILFQHLFWFFGHPEVYIVALPAFGIVSDLIS 301 Query: 300 THARKNIFGYRMMVWAIVAIGALSFVVWAHHMYVSGMHPYFGFFFATTTLIIAIPTAIKV 359 THARKNIFGYRMMVWAIV IG LSF+VWAHHMYVSGM+PYFGFFFATTTLIIA+PTAIKV Sbjct: 302 THARKNIFGYRMMVWAIVIIGGLSFIVWAHHMYVSGMNPYFGFFFATTTLIIAVPTAIKV 361 Query: 360 YNWVLTLWRGDIHLTVPMLFALGFIVTFVNGGLTGLFLGNVVVDVPLSDTMFVVAHFHMV 419 YNWVLTLWRGDIHLT+PMLFALGFIVTFVNGGLTGLFLGNVVVDVPLSDTMFVVAHFHMV Sbjct: 362 YNWVLTLWRGDIHLTLPMLFALGFIVTFVNGGLTGLFLGNVVVDVPLSDTMFVVAHFHMV 421 Query: 420 MGIAPIMAVFGGIYHWYPKVTGRMLNDALGRFHFWVTFIGA 460 MG+APIM +FG IYHWYPK+TGRMLN+ALG+ HFWVTFIGA Sbjct: 422 MGVAPIMVIFGAIYHWYPKITGRMLNEALGQVHFWVTFIGA 462 >ref|YP_004549894.1| cytochrome c oxidase subunit I [Sinorhizobium meliloti AK83] gb|AEG05245.1| cytochrome c oxidase, subunit I [Sinorhizobium meliloti BL225C] gb|AEG54280.1| cytochrome c oxidase, subunit I [Sinorhizobium meliloti AK83] Length = 592 Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/461 (85%), Positives = 432/461 (93%), Gaps = 1/461 (0%) Query: 1 MVDIPFDQVAGIPPAEVGEVELYHPHSWWTRYVFSQDAKVIAVQYSITAMSIGMVALVLS 60 MVD+ +PP EV +VELYHPHSWWTRYVFSQDAK+IA+QYS+TA++IGMVALVLS Sbjct: 1 MVDVRSGIGEALPPPEVEDVELYHPHSWWTRYVFSQDAKIIAIQYSMTAIAIGMVALVLS 60 Query: 61 WMMRLQLGFPGTFSFIDANQYLQFITMHGMIMVIYLLTALFLGGFGNYLIPLMVGARDMV 120 W++RLQLGFPGTF IDA +Y QFITMHGMIMVIYLLTALFLGGFGNYLIPLMVGARDMV Sbjct: 61 WLIRLQLGFPGTFELIDAERYYQFITMHGMIMVIYLLTALFLGGFGNYLIPLMVGARDMV 120 Query: 121 FPYVNMLSYWVYLLAVLVLAATFFVPGGPTGAGWTLYPPQAILSGTPG-QDWGIVLMLAS 179 FPY NMLSYW+YLLAV+VLAA+FF PGGPTGAGWTLYPPQA+LSGTPG +DWGI++ML+S Sbjct: 121 FPYANMLSYWIYLLAVIVLAASFFTPGGPTGAGWTLYPPQAVLSGTPGGRDWGIIMMLSS 180 Query: 180 LILFIIGFTMGGLNYVVTVLQARTRGMTLMRMPLTVWGIFTATVMALLAFPALFVASVML 239 LI+F+IGFTMGGLNYVVTVLQ R RGMTLMR+PLTVWGIFTATVMALLAFPALFVA VM+ Sbjct: 181 LIIFVIGFTMGGLNYVVTVLQGRARGMTLMRLPLTVWGIFTATVMALLAFPALFVACVMM 240 Query: 240 LLDRLLGTSFFMPTLVEMGQLTKYGGGSPILFQHLFWFFGHPEVYIVALPAFGIISDLIS 299 L DRLLGTSFFMP +VEMG+ +YGGGSPILFQHLFWFFGHPEVYIVALPAFGI+SDLIS Sbjct: 241 LFDRLLGTSFFMPAIVEMGEQLQYGGGSPILFQHLFWFFGHPEVYIVALPAFGIVSDLIS 300 Query: 300 THARKNIFGYRMMVWAIVAIGALSFVVWAHHMYVSGMHPYFGFFFATTTLIIAIPTAIKV 359 THARKNIFGYRMMVWAIV IG LSF+VWAHHMYVSGM+PYFGFFFATTTLIIA+PTAIKV Sbjct: 301 THARKNIFGYRMMVWAIVIIGGLSFIVWAHHMYVSGMNPYFGFFFATTTLIIAVPTAIKV 360 Query: 360 YNWVLTLWRGDIHLTVPMLFALGFIVTFVNGGLTGLFLGNVVVDVPLSDTMFVVAHFHMV 419 YNWVLTLWRG+IHLT+PMLFAL FIVTFVNGGLTGLFLGNVVVDVPLSDTMFVVAHFHMV Sbjct: 361 YNWVLTLWRGNIHLTLPMLFALAFIVTFVNGGLTGLFLGNVVVDVPLSDTMFVVAHFHMV 420 Query: 420 MGIAPIMAVFGGIYHWYPKVTGRMLNDALGRFHFWVTFIGA 460 MG+APIM +FG IYHWYPK+TGRMLN+A+G+ HFWVTFIGA Sbjct: 421 MGVAPIMVIFGAIYHWYPKITGRMLNEAMGQIHFWVTFIGA 461 >ref|NP_386623.1| alternative cytochrome C oxidase polypeptide I transmembrane protein [Sinorhizobium meliloti 1021] emb|CAC47096.1| Probable alternative cytochrome C oxidase polypeptide I transmembrane protein [Sinorhizobium meliloti 1021] gb|AEH79924.1| cytochrome c oxidase polypeptide I [Sinorhizobium meliloti SM11] Length = 593 Score = 804 bits (2076), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/461 (85%), Positives = 432/461 (93%), Gaps = 1/461 (0%) Query: 1 MVDIPFDQVAGIPPAEVGEVELYHPHSWWTRYVFSQDAKVIAVQYSITAMSIGMVALVLS 60 MVD+ +PP EV +VELYHPHSWWTRYVFSQDAK+IA+QYS+TA++IGMVALVLS Sbjct: 2 MVDVRSGIGEALPPPEVEDVELYHPHSWWTRYVFSQDAKIIAIQYSMTAIAIGMVALVLS 61 Query: 61 WMMRLQLGFPGTFSFIDANQYLQFITMHGMIMVIYLLTALFLGGFGNYLIPLMVGARDMV 120 W++RLQLGFPGTF IDA +Y QFITMHGMIMVIYLLTALFLGGFGNYLIPLMVGARDMV Sbjct: 62 WLIRLQLGFPGTFELIDAERYYQFITMHGMIMVIYLLTALFLGGFGNYLIPLMVGARDMV 121 Query: 121 FPYVNMLSYWVYLLAVLVLAATFFVPGGPTGAGWTLYPPQAILSGTPG-QDWGIVLMLAS 179 FPY NMLSYW+YLLAV+VLAA+FF PGGPTGAGWTLYPPQA+LSGTPG +DWGI++ML+S Sbjct: 122 FPYANMLSYWIYLLAVIVLAASFFTPGGPTGAGWTLYPPQAVLSGTPGGRDWGIIMMLSS 181 Query: 180 LILFIIGFTMGGLNYVVTVLQARTRGMTLMRMPLTVWGIFTATVMALLAFPALFVASVML 239 LI+F+IGFTMGGLNYVVTVLQ R RGMTLMR+PLTVWGIFTATVMALLAFPALFVA VM+ Sbjct: 182 LIIFVIGFTMGGLNYVVTVLQGRARGMTLMRLPLTVWGIFTATVMALLAFPALFVACVMM 241 Query: 240 LLDRLLGTSFFMPTLVEMGQLTKYGGGSPILFQHLFWFFGHPEVYIVALPAFGIISDLIS 299 L DRLLGTSFFMP +VEMG+ +YGGGSPILFQHLFWFFGHPEVYIVALPAFGI+SDLIS Sbjct: 242 LFDRLLGTSFFMPAIVEMGEQLQYGGGSPILFQHLFWFFGHPEVYIVALPAFGIVSDLIS 301 Query: 300 THARKNIFGYRMMVWAIVAIGALSFVVWAHHMYVSGMHPYFGFFFATTTLIIAIPTAIKV 359 THARKNIFGYRMMVWAIV IG LSF+VWAHHMYVSGM+PYFGFFFATTTLIIA+PTAIKV Sbjct: 302 THARKNIFGYRMMVWAIVIIGGLSFIVWAHHMYVSGMNPYFGFFFATTTLIIAVPTAIKV 361 Query: 360 YNWVLTLWRGDIHLTVPMLFALGFIVTFVNGGLTGLFLGNVVVDVPLSDTMFVVAHFHMV 419 YNWVLTLWRG+IHLT+PMLFAL FIVTFVNGGLTGLFLGNVVVDVPLSDTMFVVAHFHMV Sbjct: 362 YNWVLTLWRGNIHLTLPMLFALAFIVTFVNGGLTGLFLGNVVVDVPLSDTMFVVAHFHMV 421 Query: 420 MGIAPIMAVFGGIYHWYPKVTGRMLNDALGRFHFWVTFIGA 460 MG+APIM +FG IYHWYPK+TGRMLN+A+G+ HFWVTFIGA Sbjct: 422 MGVAPIMVIFGAIYHWYPKITGRMLNEAMGQIHFWVTFIGA 462