BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0011.p         (115 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_770421.1| hypothetical protein bll3781 [Bradyrhizobium ja...   186   8e-46
ref|NP_102723.1| cytochrome c oxidase subunit IV [Mesorhizobium ...   166   2e-39
emb|CAA48551.1| unnamed protein product [Bradyrhizobium japonicum]    162   2e-38
ref|YP_675027.1| hypothetical protein Meso_2478 [Mesorhizobium s...   160   8e-38
ref|YP_470112.1| hypothetical protein RHE_CH02613 [Rhizobium etl...   160   9e-38

>ref|NP_770421.1| hypothetical protein bll3781 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC49046.1| hypothetical transmembrane protein [Bradyrhizobium japonicum USDA
           110]
          Length = 123

 Score =  186 bits (473), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 93/103 (90%), Positives = 97/103 (94%)

Query: 13  EGQQHPIKLYLVVWGWLFVLSTCSYLVDYFGIHGHLRWSLILLFMVLKAGLIVAVFMHMA 72
           +GQQHPIKLYLVVW WLFVLSTCSYLVDYFG+HG LRWSLILLFMVLKAGLIVAVFMHMA
Sbjct: 21  KGQQHPIKLYLVVWAWLFVLSTCSYLVDYFGLHGSLRWSLILLFMVLKAGLIVAVFMHMA 80

Query: 73  WERLALAYAILLPPVLVLVFVGIMVFESDYTHLLRVMFFAPAS 115
           WERLALAYAILLPPVLVLVFV IMV ES+YTHLLRV+FFA  S
Sbjct: 81  WERLALAYAILLPPVLVLVFVAIMVLESEYTHLLRVLFFATPS 123


>ref|NP_102723.1| cytochrome c oxidase subunit IV [Mesorhizobium loti MAFF303099]
 dbj|BAB48509.1| cytochrome c oxidase subunit IV [Mesorhizobium loti MAFF303099]
          Length = 103

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/98 (80%), Positives = 90/98 (91%)

Query: 15  QQHPIKLYLVVWGWLFVLSTCSYLVDYFGIHGHLRWSLILLFMVLKAGLIVAVFMHMAWE 74
           Q+HPIKLYLVVW WLF+LSTCSYLVDYFG+ G+LRWSLIL+FM+LKAGLIVAVFMHMAWE
Sbjct: 3   QEHPIKLYLVVWAWLFILSTCSYLVDYFGLQGYLRWSLILIFMILKAGLIVAVFMHMAWE 62

Query: 75  RLALAYAILLPPVLVLVFVGIMVFESDYTHLLRVMFFA 112
           RLALAYAI+LPP+LVLVFV +MVFE+DYT   R+ FF 
Sbjct: 63  RLALAYAIILPPILVLVFVTMMVFEADYTLFTRLAFFG 100


>emb|CAA48551.1| unnamed protein product [Bradyrhizobium japonicum]
          Length = 114

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 81/87 (93%), Positives = 83/87 (95%)

Query: 13  EGQQHPIKLYLVVWGWLFVLSTCSYLVDYFGIHGHLRWSLILLFMVLKAGLIVAVFMHMA 72
           +GQQHPIKLYLVVW WLFVLSTCSYLVDYFG+HG LRWSLILLFMVLKAGLIVAVFMHMA
Sbjct: 28  KGQQHPIKLYLVVWAWLFVLSTCSYLVDYFGLHGSLRWSLILLFMVLKAGLIVAVFMHMA 87

Query: 73  WERLALAYAILLPPVLVLVFVGIMVFE 99
           WERLALAYAILLPPVLVLVFV IMV E
Sbjct: 88  WERLALAYAILLPPVLVLVFVAIMVLE 114


>ref|YP_675027.1| hypothetical protein Meso_2478 [Mesorhizobium sp. BNC1]
 gb|ABG63862.1| conserved hypothetical protein [Chelativorans sp. BNC1]
          Length = 124

 Score =  160 bits (404), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 78/103 (75%), Positives = 87/103 (84%)

Query: 9   AAHAEGQQHPIKLYLVVWGWLFVLSTCSYLVDYFGIHGHLRWSLILLFMVLKAGLIVAVF 68
           AAHAE QQHPI++YL+VW WLFVLS CSYL+DY G+ G LRWSLI+ FM+LKAGLIVAVF
Sbjct: 18  AAHAESQQHPIRIYLIVWFWLFVLSACSYLIDYIGLQGMLRWSLIITFMLLKAGLIVAVF 77

Query: 69  MHMAWERLALAYAILLPPVLVLVFVGIMVFESDYTHLLRVMFF 111
           MHM WERLAL YAILLPP+ VLVFV IM  ESDYT L R+M F
Sbjct: 78  MHMVWERLALVYAILLPPLAVLVFVIIMAIESDYTALTRMMSF 120


>ref|YP_470112.1| hypothetical protein RHE_CH02613 [Rhizobium etli CFN 42]
 gb|ABC91385.1| hypothetical conserved membrane protein [Rhizobium etli CFN 42]
          Length = 121

 Score =  160 bits (404), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 83/110 (75%), Positives = 90/110 (81%), Gaps = 1/110 (0%)

Query: 5   VASGAAHAEGQQHPIKLYLVVWGWLFVLSTCSYLVDYFGIHGHLRWSLILLFMVLKAGLI 64
            A   AH  GQQHPI+LYL VWG LFVLS  SYLVDYFGI G+LRW+LILLFM+LKAGLI
Sbjct: 12  TAQAQAHT-GQQHPIRLYLFVWGLLFVLSAFSYLVDYFGIQGYLRWTLILLFMMLKAGLI 70

Query: 65  VAVFMHMAWERLALAYAILLPPVLVLVFVGIMVFESDYTHLLRVMFFAPA 114
           VAVFMHMAWERLAL YAIL+PPVLVLVFV +MV ES YT L R+ FF  A
Sbjct: 71  VAVFMHMAWERLALVYAILMPPVLVLVFVALMVSESQYTILTRLAFFGTA 120