BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0007.p (287 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004751323.1| LysR family transcriptional regulator [Colli... 284 1e-74 ref|ZP_02372534.1| transcriptional regulator, LysR family protei... 280 2e-73 ref|ZP_02386370.1| transcriptional regulator, LysR family protei... 280 2e-73 ref|YP_440946.1| LysR family transcriptional regulator [Burkhold... 280 2e-73 ref|ZP_02462148.1| transcriptional regulator, LysR family protei... 279 4e-73 >ref|YP_004751323.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK60500.1| transcriptional regulator, LysR family [Collimonas fungivorans Ter331] Length = 304 Score = 284 bits (726), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 136/292 (46%), Positives = 199/292 (68%), Gaps = 6/292 (2%) Query: 1 MSVFARVADLGSFTAAAKELRMSPTMIGKHIRFLEDRLGSQLINRSTRRQGLTELGRSYL 60 M++F RV D GS TAAA E +SPTM+G H++ LEDRLG++LINR+TRRQ LTE G++Y Sbjct: 9 MAIFIRVVDTGSLTAAAAECDLSPTMVGNHLQALEDRLGTRLINRTTRRQNLTEFGKAYY 68 Query: 61 DHCRQLLEQAEAGDALVEEALSAPRGKLRIATSVAFGSYSLAPALVRFMKKYPEVSVDLI 120 + C ++L+ DAL E ++P+G+LR+ S FG+ L PAL + +YP+V +D++ Sbjct: 69 ERCIEILDLVGDADALALETQTSPKGRLRVTASATFGTERLIPALADYTARYPKVDLDVV 128 Query: 121 LSDRMVDLLEEGLDAAIRVGTLTDSTMMSRSLSPYTGVVCAAPSYLAERGTPTHPADLAR 180 ++D +VDL E+G +AAIR+G L S +++R L+PY ++CAAPSYLA+RG P P DLA+ Sbjct: 129 ITDTVVDLAEDGFEAAIRLGNLQGSDLIARPLAPYRLMICAAPSYLAKRGEPRRPEDLAQ 188 Query: 181 HECLRY-----PGWSDGQ-RWTFLGPEGEVHVDVASRLFINSAFGIRYAALAGAGIVLMR 234 H CL Y W Q W GPEGE+ V ++ R+ ++SA G+R AALAG GIV++ Sbjct: 189 HNCLAYTYSSRSEWRSAQASWRMTGPEGEISVPISGRMQVDSAQGLRQAALAGMGIVMLP 248 Query: 235 DELLADDIAAGRLQVLLPNYTTRARARQILWPKHRKMTPKLRALIDFIVETY 286 + +L+ DI G L LLP YT R +++ + +M+PKLR+ +DF+VE + Sbjct: 249 EIMLSKDIEDGLLVRLLPGYTPPIRPLNLIYLRDHRMSPKLRSFVDFVVERF 300 >ref|ZP_02372534.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis TXDOH] Length = 298 Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 141/290 (48%), Positives = 191/290 (65%), Gaps = 3/290 (1%) Query: 1 MSVFARVADLGSFTAAAKELRMSPTMIGKHIRFLEDRLGSQLINRSTRRQGLTELGRSYL 60 M+VF + A+ GSF AA L +S M+GKH+RFLE G +LINR+TRRQ LTE GR++ Sbjct: 1 MAVFVKAAETGSFAAAGASLGLSSQMVGKHVRFLETHYGMRLINRTTRRQSLTEAGRAFY 60 Query: 61 DHCRQLLEQAEAGDALVEEALSAPRGKLRIATSVAFGSYSLAPALVRFMKKYPEVSVDLI 120 + R +L +A+A DAL ++APRG LRI ++FG + L P L +M+ YPEV +DL Sbjct: 61 ERSRAVLAEAQAVDALAANLMAAPRGTLRINAPISFGVHCLMPMLASYMRAYPEVQIDLT 120 Query: 121 LSDRMVDLLEEGLDAAIRVGTLTDSTMMSRSLSPYTGVVCAAPSYLAERGTPTHPADLAR 180 LSDR+VD+++EG DA IR+ L DS +++R L+PY V+CA+P+YLAE G P PADLA Sbjct: 121 LSDRIVDVVDEGYDAVIRIAPLADSGLIARPLAPYRLVLCASPAYLAEHGAPAEPADLAA 180 Query: 181 HECL--RYPGWSDGQRWTFLGPEGEVH-VDVASRLFINSAFGIRYAALAGAGIVLMRDEL 237 HECL Y G W F +G+ H V V SRL +N+ +R AAL G GI+L EL Sbjct: 181 HECLGFSYSGQPAALEWPFESAQGQQHSVRVRSRLAVNNGAALRMAALDGLGIILQPAEL 240 Query: 238 LADDIAAGRLQVLLPNYTTRARARQILWPKHRKMTPKLRALIDFIVETYG 287 + DD+AAGRL LLP + AR +L+ R+ TPKLR+ ID ++ +G Sbjct: 241 VRDDLAAGRLVRLLPGHEPPARPIHVLYSPDRQPTPKLRSFIDAVIAAFG 290 >ref|ZP_02386370.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis Bt4] ref|ZP_05588661.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] Length = 298 Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 141/290 (48%), Positives = 191/290 (65%), Gaps = 3/290 (1%) Query: 1 MSVFARVADLGSFTAAAKELRMSPTMIGKHIRFLEDRLGSQLINRSTRRQGLTELGRSYL 60 M+VF + A+ GSF AA L +S M+GKH+RFLE G +LINR+TRRQ LTE GR++ Sbjct: 1 MAVFVKAAETGSFAAAGASLGLSSQMVGKHVRFLETHYGMRLINRTTRRQSLTEAGRAFY 60 Query: 61 DHCRQLLEQAEAGDALVEEALSAPRGKLRIATSVAFGSYSLAPALVRFMKKYPEVSVDLI 120 + R +L +A+A DAL ++APRG LRI ++FG + L P L +M+ YPEV +DL Sbjct: 61 ERSRAVLAEAQAVDALAANLMAAPRGTLRINAPISFGVHCLMPMLASYMRAYPEVQIDLT 120 Query: 121 LSDRMVDLLEEGLDAAIRVGTLTDSTMMSRSLSPYTGVVCAAPSYLAERGTPTHPADLAR 180 LSDR+VD+++EG DA IR+ L DS +++R L+PY V+CA+P+YLAE G P PADLA Sbjct: 121 LSDRIVDVVDEGYDAVIRIAPLADSGLIARPLAPYRLVLCASPAYLAEHGAPAEPADLAA 180 Query: 181 HECL--RYPGWSDGQRWTFLGPEGEVH-VDVASRLFINSAFGIRYAALAGAGIVLMRDEL 237 HECL Y G W F +G+ H V V SRL +N+ +R AAL G GI+L EL Sbjct: 181 HECLGFSYSGQPAALEWPFESAQGQQHSVRVRSRLAVNNGAALRMAALDGLGIILQPAEL 240 Query: 238 LADDIAAGRLQVLLPNYTTRARARQILWPKHRKMTPKLRALIDFIVETYG 287 + DD+AAGRL LLP + AR +L+ R+ TPKLR+ ID ++ +G Sbjct: 241 VRDDLAAGRLVRLLPGHEPPARPIHVLYSPDRQPTPKLRSFIDAVIAAFG 290 >ref|YP_440946.1| LysR family transcriptional regulator [Burkholderia thailandensis E264] gb|ABC38982.1| transcriptional regulator, LysR family [Burkholderia thailandensis E264] Length = 304 Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 141/290 (48%), Positives = 191/290 (65%), Gaps = 3/290 (1%) Query: 1 MSVFARVADLGSFTAAAKELRMSPTMIGKHIRFLEDRLGSQLINRSTRRQGLTELGRSYL 60 M+VF + A+ GSF AA L +S M+GKH+RFLE G +LINR+TRRQ LTE GR++ Sbjct: 7 MAVFVKAAETGSFAAAGASLGLSSQMVGKHVRFLETHYGMRLINRTTRRQSLTEAGRAFY 66 Query: 61 DHCRQLLEQAEAGDALVEEALSAPRGKLRIATSVAFGSYSLAPALVRFMKKYPEVSVDLI 120 + R +L +A+A DAL ++APRG LRI ++FG + L P L +M+ YPEV +DL Sbjct: 67 ERSRAVLAEAQAVDALAANLMAAPRGTLRINAPISFGVHCLMPMLASYMRAYPEVQIDLT 126 Query: 121 LSDRMVDLLEEGLDAAIRVGTLTDSTMMSRSLSPYTGVVCAAPSYLAERGTPTHPADLAR 180 LSDR+VD+++EG DA IR+ L DS +++R L+PY V+CA+P+YLAE G P PADLA Sbjct: 127 LSDRIVDVVDEGYDAVIRIAPLADSGLIARPLAPYRLVLCASPAYLAEHGAPAEPADLAA 186 Query: 181 HECL--RYPGWSDGQRWTFLGPEGEVH-VDVASRLFINSAFGIRYAALAGAGIVLMRDEL 237 HECL Y G W F +G+ H V V SRL +N+ +R AAL G GI+L EL Sbjct: 187 HECLGFSYSGQPAALEWPFESAQGQQHSVRVRSRLAVNNGAALRMAALDGLGIILQPAEL 246 Query: 238 LADDIAAGRLQVLLPNYTTRARARQILWPKHRKMTPKLRALIDFIVETYG 287 + DD+AAGRL LLP + AR +L+ R+ TPKLR+ ID ++ +G Sbjct: 247 VRDDLAAGRLVRLLPGHEPPARPIHVLYSPDRQPTPKLRSFIDAVIAAFG 296 >ref|ZP_02462148.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis MSMB43] Length = 298 Score = 279 bits (713), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 143/290 (49%), Positives = 192/290 (66%), Gaps = 3/290 (1%) Query: 1 MSVFARVADLGSFTAAAKELRMSPTMIGKHIRFLEDRLGSQLINRSTRRQGLTELGRSYL 60 M+VF + A+ GSF AA L +S M+GKH+RFLE G +LINR+TRRQ LTE GR++ Sbjct: 1 MAVFVKAAETGSFAAAGASLGLSSQMVGKHVRFLETHYGMRLINRTTRRQSLTEAGRAFY 60 Query: 61 DHCRQLLEQAEAGDALVEEALSAPRGKLRIATSVAFGSYSLAPALVRFMKKYPEVSVDLI 120 + R +L +A+A DAL ++APRG LRI ++FG + L P L +++ YPEV VDL Sbjct: 61 ERSRAVLAEAQAVDALAANLMAAPRGTLRINAPISFGVHCLMPMLASYLRAYPEVRVDLT 120 Query: 121 LSDRMVDLLEEGLDAAIRVGTLTDSTMMSRSLSPYTGVVCAAPSYLAERGTPTHPADLAR 180 LSDR+VD ++EG DA IR+ L DS +++R L+PY V+CA+P+YLAERGTP PADLA Sbjct: 121 LSDRVVDFVDEGYDAVIRIAPLADSGLIARPLAPYRLVLCASPAYLAERGTPATPADLAA 180 Query: 181 HECL--RYPGWSDGQRWTFLGPEGEVH-VDVASRLFINSAFGIRYAALAGAGIVLMRDEL 237 HECL Y G W F +G+ H V V SRL +N+ +R AAL G GI+L EL Sbjct: 181 HECLGFSYSGQPAALEWPFESAQGQQHSVRVRSRLAVNNGAALRMAALDGLGIILQPAEL 240 Query: 238 LADDIAAGRLQVLLPNYTTRARARQILWPKHRKMTPKLRALIDFIVETYG 287 + DD+AAGRL LLP + AR +L+ R+ TPKLR+ ID ++ +G Sbjct: 241 VRDDLAAGRLVRLLPGHEPPARPIHLLYSPDRQPTPKLRSFIDAVMAGFG 290