BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0005.p         (153 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001187690.1| 2Fe-2S iron-sulfur cluster binding domain-co...   244   3e-63
ref|YP_002362752.1| (2Fe-2S)-binding domain-containing protein [...   235   2e-60
ref|YP_003695437.1| (2Fe-2S)-binding domain-containing protein [...   229   1e-58
ref|YP_003593985.1| (2Fe-2S)-binding domain-containing protein [...   224   3e-57
ref|YP_001888693.1| (2Fe-2S)-binding domain-containing protein [...   221   3e-56

>ref|YP_001187690.1| 2Fe-2S iron-sulfur cluster binding domain-containing protein
           [Pseudomonas mendocina ymp]
 gb|ABP84958.1| (2Fe-2S)-binding domain protein [Pseudomonas mendocina ymp]
          Length = 177

 Score =  244 bits (624), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 115/149 (77%), Positives = 128/149 (85%)

Query: 1   MPFQITINGTSHQVDADGDTPLLWVLRDVLGMTGTKFGCGMALCGACTVHLDDSAVRSCI 60
           M   I +NG  HQVD D DTPLLWVLRDVLGMTGTKFGCGMALCGACTVH++ +AVRSCI
Sbjct: 20  MAHMIKVNGKEHQVDVDDDTPLLWVLRDVLGMTGTKFGCGMALCGACTVHMNGNAVRSCI 79

Query: 61  TTIDSIGDSKITTIEAVGNTPAGKKIQDAWLAHEVPQCGYCQSGQIMSASALLASKPKPT 120
             I+++  S+ITTIEA+G TPAGK+IQDAWLAHEV QCGYCQSGQIMSASALLA    P+
Sbjct: 80  MPINAVVGSEITTIEAIGETPAGKRIQDAWLAHEVVQCGYCQSGQIMSASALLARNANPS 139

Query: 121 DADIDDAMSGNICRCGTYVRIREAIKQAA 149
           D+DID AM+GNICRCGTYVRIREAIK AA
Sbjct: 140 DSDIDGAMAGNICRCGTYVRIREAIKSAA 168


>ref|YP_002362752.1| (2Fe-2S)-binding domain-containing protein [Methylocella silvestris
           BL2]
 gb|ACK51390.1| (2Fe-2S)-binding domain protein [Methylocella silvestris BL2]
          Length = 159

 Score =  235 bits (599), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 111/153 (72%), Positives = 123/153 (80%)

Query: 1   MPFQITINGTSHQVDADGDTPLLWVLRDVLGMTGTKFGCGMALCGACTVHLDDSAVRSCI 60
           M + I +NG     D DGDTPLLWVLRD+  +TGTKFGCG++LCGACTVH D S +RSCI
Sbjct: 1   MAYTIKVNGKERTADVDGDTPLLWVLRDIFALTGTKFGCGVSLCGACTVHQDGSPIRSCI 60

Query: 61  TTIDSIGDSKITTIEAVGNTPAGKKIQDAWLAHEVPQCGYCQSGQIMSASALLASKPKPT 120
           TTIDSIG S ITTIEA+G T AG KIQ AWLA E PQCGYCQSGQIMSA+ALLA  P P+
Sbjct: 61  TTIDSIGASAITTIEAIGETEAGAKIQKAWLATETPQCGYCQSGQIMSATALLAGNPHPS 120

Query: 121 DADIDDAMSGNICRCGTYVRIREAIKQAAQSGG 153
           D+DIDDAM+GNICRCGTY RIREAIK AA   G
Sbjct: 121 DSDIDDAMTGNICRCGTYGRIREAIKLAANDAG 153


>ref|YP_003695437.1| (2Fe-2S)-binding domain-containing protein [Starkeya novella DSM
           506]
 gb|ADH90818.1| (2Fe-2S)-binding domain protein [Starkeya novella DSM 506]
          Length = 158

 Score =  229 bits (584), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 104/149 (69%), Positives = 124/149 (83%)

Query: 1   MPFQITINGTSHQVDADGDTPLLWVLRDVLGMTGTKFGCGMALCGACTVHLDDSAVRSCI 60
           M F + +NGT+H VD DGDTPLLWVLRDV+G+TGTKFGCG+A+CGACTVHLD  AVR+C+
Sbjct: 1   MSFTLNVNGTTHAVDVDGDTPLLWVLRDVIGLTGTKFGCGIAMCGACTVHLDGMAVRACV 60

Query: 61  TTIDSIGDSKITTIEAVGNTPAGKKIQDAWLAHEVPQCGYCQSGQIMSASALLASKPKPT 120
           T ++++G + +TTIEA+G T  G ++Q AWL  EV QCGYCQSGQIMSA+ALLA  P PT
Sbjct: 61  TPVETVGAAAVTTIEAIGATDEGARVQKAWLDEEVVQCGYCQSGQIMSAAALLAVNPSPT 120

Query: 121 DADIDDAMSGNICRCGTYVRIREAIKQAA 149
           DADID  M+GNICRCGTY RIR AIKQAA
Sbjct: 121 DADIDAVMAGNICRCGTYPRIRAAIKQAA 149


>ref|YP_003593985.1| (2Fe-2S)-binding domain-containing protein [Caulobacter segnis ATCC
           21756]
 gb|ADG11367.1| (2Fe-2S)-binding domain protein [Caulobacter segnis ATCC 21756]
          Length = 154

 Score =  224 bits (571), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 101/149 (67%), Positives = 120/149 (80%)

Query: 1   MPFQITINGTSHQVDADGDTPLLWVLRDVLGMTGTKFGCGMALCGACTVHLDDSAVRSCI 60
           M F +T+NG     D DGDTPLLWVLRD LG+ G KFGCG ALCGACTVHLD   +R+C+
Sbjct: 1   MAFTLTVNGEPRTADVDGDTPLLWVLRDTLGLVGAKFGCGAALCGACTVHLDGEPIRACV 60

Query: 61  TTIDSIGDSKITTIEAVGNTPAGKKIQDAWLAHEVPQCGYCQSGQIMSASALLASKPKPT 120
           T I  IG   +TTIE +G TP G K+Q+AW A +VPQCGYCQ+GQIMSA+ALLASKPKPT
Sbjct: 61  TPISDIGGKTVTTIEGIGKTPVGAKVQEAWKAIDVPQCGYCQAGQIMSATALLASKPKPT 120

Query: 121 DADIDDAMSGNICRCGTYVRIREAIKQAA 149
           DADID+AM+GN+CRC TY+RI++AIK AA
Sbjct: 121 DADIDEAMNGNLCRCATYIRIKKAIKVAA 149


>ref|YP_001888693.1| (2Fe-2S)-binding domain-containing protein [Burkholderia
           phytofirmans PsJN]
 gb|ACD19323.1| (2Fe-2S)-binding domain protein [Burkholderia phytofirmans PsJN]
          Length = 151

 Score =  221 bits (563), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 104/146 (71%), Positives = 122/146 (83%)

Query: 5   ITINGTSHQVDADGDTPLLWVLRDVLGMTGTKFGCGMALCGACTVHLDDSAVRSCITTID 64
           + ING +H VDA  D PLLWVLRD++G+TGTKFGCG+A CGACTVHLD  AVRSC+    
Sbjct: 4   LNINGQTHTVDAPPDMPLLWVLRDIVGLTGTKFGCGIAQCGACTVHLDGVAVRSCVLPAA 63

Query: 65  SIGDSKITTIEAVGNTPAGKKIQDAWLAHEVPQCGYCQSGQIMSASALLASKPKPTDADI 124
           ++GD KITTIEAVG+TPAG+K+Q AW   +V QCGYCQSGQ+MSA++LLAS P PTDADI
Sbjct: 64  AVGDKKITTIEAVGSTPAGQKVQQAWRQLDVVQCGYCQSGQVMSAASLLASNPNPTDADI 123

Query: 125 DDAMSGNICRCGTYVRIREAIKQAAQ 150
           D AM+GNICRCGTY RIR AIKQAA+
Sbjct: 124 DAAMAGNICRCGTYNRIRAAIKQAAK 149