BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0004.p (683 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002234151.1| putative dehydrogenase molybdopterin binding... 446 e-123 ref|YP_002362751.1| molybdopterin binding aldehyde oxidase and x... 445 e-122 ref|YP_001187691.1| molybdopterin binding aldehyde oxidase and x... 443 e-122 ref|ZP_04947379.1| Aerobic-type carbon monoxide dehydrogenase [B... 442 e-121 ref|ZP_02891606.1| aldehyde oxidase and xanthine dehydrogenase m... 441 e-121 >ref|YP_002234151.1| putative dehydrogenase molybdopterin binding subunit [Burkholderia cenocepacia J2315] emb|CAR55394.1| putative dehydrogenase, molybdopterin binding subunit [Burkholderia cenocepacia J2315] Length = 739 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 233/402 (57%), Positives = 298/402 (74%), Gaps = 15/402 (3%) Query: 12 ADLSRRNFLRAG----AIAGGGLLLSVSLPFAGRES----------EAAASDGFAPNAFV 57 A +SRR FL+ G A AGGGLLL SLP AG ++ E AA FAPNAFV Sbjct: 13 AGVSRRGFLKLGMSLGAAAGGGLLLGFSLPAAGDDARRSVIGGDAAEPAAPGVFAPNAFV 72 Query: 58 RIGGDGKVVLTMPYVEMGQGTYTSIPMLIAEELEIGLTQVRLEHAPPSDKLYANPLLGVQ 117 +I GKV L MP VEMGQG YT++PMLIAEELE+ L+ V L+HAPP++KL+ +PLLG Q Sbjct: 73 QIDRAGKVTLVMPKVEMGQGVYTALPMLIAEELEVPLSSVTLDHAPPNEKLFLDPLLGGQ 132 Query: 118 ATGNSNAMRGAWQPMRKAGATAKAMLVAAAAKRWNVEPGTCRAENGEVHHAASGRKLGYG 177 TG S ++R AW+PMR+AGATA+ +LV AAAK+WNV+P TCRA NGEV H SGR+ YG Sbjct: 133 LTGGSTSVRYAWEPMRRAGATARTLLVTAAAKQWNVDPATCRAANGEVQHPPSGRRASYG 192 Query: 178 ELATDAAQMPVPENVTLKSPSEFKLIGTPAKRLDTPSKINGTAVYGIDARPPGVKIATLA 237 +LA AA++PVP++V LK P++FKLIGTPAKRLD+P K++GTA +G+D R PG+ A + Sbjct: 193 QLADAAAKLPVPKDVALKQPADFKLIGTPAKRLDSPEKVDGTAQFGLDVRLPGMLYAVIV 252 Query: 238 QSPVFGGRVKRVDDAAAKAVNGVRQIVTLDDAVAVVADHMGAAKKGLAALTIEWDEGAHA 297 SPVFGG V VDD AA+ + GVRQ+V +D+AVAVV DH AAK+G +AL ++W+EGA A Sbjct: 253 NSPVFGGTVASVDDTAARKIPGVRQVVRVDNAVAVVGDHTWAAKRGASALVVKWNEGAGA 312 Query: 298 KLATSDIAREL-ETATTKPGAVAQNIGDADKAMAGAATKVEATYQLPFLAHATMEPMNCT 356 K++T D+ +L + A GAVA+ GD KA A A T+V+A Y+ P LAHATMEP+NCT Sbjct: 313 KVSTKDLFADLAQAAANGKGAVARKEGDVGKAFANAKTRVDAVYEQPLLAHATMEPVNCT 372 Query: 357 VHVRPDGCEIWVGSQALSRAQAVAAKVLNMPPEKVVVHNHLL 398 VHVR DGCEIWVG+Q +RA+ A ++ +PP+K+VVHNHLL Sbjct: 373 VHVRGDGCEIWVGTQVPTRARDTAQQLTGLPPDKIVVHNHLL 414 >ref|YP_002362751.1| molybdopterin binding aldehyde oxidase and xanthine dehydrogenase [Methylocella silvestris BL2] gb|ACK51389.1| aldehyde oxidase and xanthine dehydrogenase molybdopterin binding [Methylocella silvestris BL2] Length = 731 Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust. Identities = 227/385 (58%), Positives = 281/385 (72%), Gaps = 2/385 (0%) Query: 16 RRNFLRAGAIAGGGLLLSVSLPFAGRESEA--AASDGFAPNAFVRIGGDGKVVLTMPYVE 73 RR F++ A AGGGLLL LP A A A GFAPNAFVRIG DGKV + + VE Sbjct: 20 RRQFIKVSAAAGGGLLLGFHLPGAALADAAKTGAFAGFAPNAFVRIGRDGKVGIIVAQVE 79 Query: 74 MGQGTYTSIPMLIAEELEIGLTQVRLEHAPPSDKLYANPLLGVQATGNSNAMRGAWQPMR 133 MGQGT+TS+PML+AEELE+GL Q+ +E APP DKLYANPLLG Q TG S ++R W+P+ Sbjct: 80 MGQGTFTSMPMLVAEELEVGLDQISVEQAPPDDKLYANPLLGFQVTGGSTSVRALWKPLL 139 Query: 134 KAGATAKAMLVAAAAKRWNVEPGTCRAENGEVHHAASGRKLGYGELATDAAQMPVPENVT 193 GA A+ +L+ AAA+ W V+P T A+ GEV ASGRKL YG LA AA PVP+ V Sbjct: 140 TTGAVARTLLIKAAAEEWKVDPSTLHADKGEVIDKASGRKLAYGALADKAATYPVPDQVP 199 Query: 194 LKSPSEFKLIGTPAKRLDTPSKINGTAVYGIDARPPGVKIATLAQSPVFGGRVKRVDDAA 253 LK P +FKL+GTPAKR+DT KING+A YGID PG+K A +A P+FGG++K V+D Sbjct: 200 LKDPKDFKLVGTPAKRVDTHLKINGSAKYGIDVILPGMKFADVAACPIFGGKLKSVNDEK 259 Query: 254 AKAVNGVRQIVTLDDAVAVVADHMGAAKKGLAALTIEWDEGAHAKLATSDIARELETATT 313 AKAV GVRQIV LD+AVAVVADH GAAKKGLAAL IEWD+G +A+ + ++ +++ A T Sbjct: 260 AKAVRGVRQIVKLDNAVAVVADHYGAAKKGLAALEIEWDDGPNAQFSQDELIAQMKQAAT 319 Query: 314 KPGAVAQNIGDADKAMAGAATKVEATYQLPFLAHATMEPMNCTVHVRPDGCEIWVGSQAL 373 GAV + GD+ +A+AGAA K A Y+ PFLAHA +EP NCTV R DGC+IW G+Q + Sbjct: 320 VDGAVGEKAGDSARAIAGAARKFTAVYEQPFLAHAALEPQNCTVDARKDGCDIWTGTQVI 379 Query: 374 SRAQAVAAKVLNMPPEKVVVHNHLL 398 +RAQAV+AKVL +P EKV VHNHL+ Sbjct: 380 TRAQAVSAKVLGLPIEKVQVHNHLI 404 >ref|YP_001187691.1| molybdopterin binding aldehyde oxidase and xanthine dehydrogenase [Pseudomonas mendocina ymp] gb|ABP84959.1| aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding protein [Pseudomonas mendocina ymp] Length = 730 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 219/391 (56%), Positives = 295/391 (75%) Query: 8 SERAADLSRRNFLRAGAIAGGGLLLSVSLPFAGRESEAAASDGFAPNAFVRIGGDGKVVL 67 S+ LSRR+FL+A A GGGLL+S SLP R+++A+ FAPNA+VRI +G + L Sbjct: 13 SQEPLALSRRHFLKASAAVGGGLLISFSLPPLMRDAQASTGRSFAPNAYVRIDREGGIYL 72 Query: 68 TMPYVEMGQGTYTSIPMLIAEELEIGLTQVRLEHAPPSDKLYANPLLGVQATGNSNAMRG 127 T+ VEMGQGTYTS+P LIAEELE+GL QV +EHAP DK Y NP+LG Q TG S ++ G Sbjct: 73 TIQPVEMGQGTYTSMPALIAEELEVGLEQVHIEHAPADDKRYPNPMLGFQVTGGSTSVPG 132 Query: 128 AWQPMRKAGATAKAMLVAAAAKRWNVEPGTCRAENGEVHHAASGRKLGYGELATDAAQMP 187 W+P+R+AGA A+ +LVAAAA++W V P +CRAE GEV H +SGRKLGYGEL AA++P Sbjct: 133 NWKPLREAGAAARVLLVAAAAQQWGVAPDSCRAEAGEVLHPSSGRKLGYGELVDAAAKLP 192 Query: 188 VPENVTLKSPSEFKLIGTPAKRLDTPSKINGTAVYGIDARPPGVKIATLAQSPVFGGRVK 247 +PE + LK P +FKLIGTPAKR D+PSK+NGTAV+GID P G+K+A + PV GG + Sbjct: 193 LPETIPLKDPKDFKLIGTPAKRTDSPSKVNGTAVFGIDVHPEGMKVAAITICPVVGGTLD 252 Query: 248 RVDDAAAKAVNGVRQIVTLDDAVAVVADHMGAAKKGLAALTIEWDEGAHAKLATSDIARE 307 VD A A AV GVR+++ D+AVAV+ADHMGAA+KGLAAL I+W+ GA+A+L+++ + + Sbjct: 253 AVDSAPAMAVRGVREVIRTDNAVAVIADHMGAARKGLAALQIKWNPGANAQLSSAQLLSD 312 Query: 308 LETATTKPGAVAQNIGDADKAMAGAATKVEATYQLPFLAHATMEPMNCTVHVRPDGCEIW 367 ++ A+ + G +N G+A++A+ AAT+++ YQ+PFLAHA +EP+NCTVHVR D C+IW Sbjct: 313 IQKASEQAGVEVRNDGNAEEALQKAATRLDVVYQVPFLAHACLEPVNCTVHVRKDACDIW 372 Query: 368 VGSQALSRAQAVAAKVLNMPPEKVVVHNHLL 398 VG Q +RA+ AA++ +P E V VHNHL+ Sbjct: 373 VGIQVPARAKTAAAELTGLPEEAVQVHNHLI 403 >ref|ZP_04947379.1| Aerobic-type carbon monoxide dehydrogenase [Burkholderia dolosa AUO158] gb|EAY70550.1| Aerobic-type carbon monoxide dehydrogenase [Burkholderia dolosa AUO158] Length = 739 Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust. Identities = 226/400 (56%), Positives = 294/400 (73%), Gaps = 15/400 (3%) Query: 14 LSRRNFLRAG----AIAGGGLLLSVSLPFAGRESEAAASDG----------FAPNAFVRI 59 +SRR+FLR G A AGGGLLL S+P AG ++ + G FAPNAFV+I Sbjct: 15 VSRRSFLRYGMSLGAAAGGGLLLGFSVPAAGDDARRSVIGGDADETPRAGVFAPNAFVQI 74 Query: 60 GGDGKVVLTMPYVEMGQGTYTSIPMLIAEELEIGLTQVRLEHAPPSDKLYANPLLGVQAT 119 G+V L MP VEMGQG YT++PMLIAEELE+ L+ V L+HAPP+++L+ +PLLG Q T Sbjct: 75 DRGGQVTLVMPKVEMGQGVYTALPMLIAEELEVSLSSVTLDHAPPNERLFLDPLLGGQLT 134 Query: 120 GNSNAMRGAWQPMRKAGATAKAMLVAAAAKRWNVEPGTCRAENGEVHHAASGRKLGYGEL 179 G S ++R AW+P+R+AGATA+ +LV+AAAK+WNV+P CRAENGEV H +SGR+ YG+L Sbjct: 135 GGSTSVRYAWEPLRRAGATARTLLVSAAAKQWNVDPAACRAENGEVLHPSSGRRASYGQL 194 Query: 180 ATDAAQMPVPENVTLKSPSEFKLIGTPAKRLDTPSKINGTAVYGIDARPPGVKIATLAQS 239 A AA++PVP++V LK P +FKLIG P KRLD+P K++GTA +G+D R PG+ A + S Sbjct: 195 ADAAAKLPVPKDVALKKPEDFKLIGKPVKRLDSPEKVDGTAQFGLDVRLPGMLYAVIVNS 254 Query: 240 PVFGGRVKRVDDAAAKAVNGVRQIVTLDDAVAVVADHMGAAKKGLAALTIEWDEGAHAKL 299 PVFGG V VDD AAK + GVRQIV D+AVAVV DH AAK+G +AL ++W+EGA AKL Sbjct: 255 PVFGGTVASVDDTAAKKIPGVRQIVRADNAVAVVGDHTWAAKRGASALVVKWNEGADAKL 314 Query: 300 ATSDIAREL-ETATTKPGAVAQNIGDADKAMAGAATKVEATYQLPFLAHATMEPMNCTVH 358 +T DI +L A GAVA+ GD DKA A T+++A Y+ PFLAHATMEP+NCTVH Sbjct: 315 STKDIVADLAHAAANGKGAVARKDGDVDKAFGNAKTRIDAVYEQPFLAHATMEPVNCTVH 374 Query: 359 VRPDGCEIWVGSQALSRAQAVAAKVLNMPPEKVVVHNHLL 398 VR DGCEIW+G+Q +RA+ ++ +PP+++VVHNHLL Sbjct: 375 VRGDGCEIWLGTQVPTRARDTVQQLTGLPPDRIVVHNHLL 414 >ref|ZP_02891606.1| aldehyde oxidase and xanthine dehydrogenase molybdopterin binding [Burkholderia ambifaria IOP40-10] gb|EDT02798.1| aldehyde oxidase and xanthine dehydrogenase molybdopterin binding [Burkholderia ambifaria IOP40-10] Length = 786 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 227/402 (56%), Positives = 297/402 (73%), Gaps = 15/402 (3%) Query: 12 ADLSRRNFLRAG----AIAGGGLLLSVSLPFAGRES----------EAAASDGFAPNAFV 57 A +SRR+FL+ G A AGGGLLL S+P AG ++ E A + FAPNAFV Sbjct: 13 AGVSRRSFLKVGMSLGAAAGGGLLLGFSMPAAGDDARRSVIGGDADENARAGVFAPNAFV 72 Query: 58 RIGGDGKVVLTMPYVEMGQGTYTSIPMLIAEELEIGLTQVRLEHAPPSDKLYANPLLGVQ 117 +I GKV L MP VEMGQG YT++PMLIAEELE+ L+ V L+HAPP++KL+ +PLLG Q Sbjct: 73 QIDRGGKVTLVMPKVEMGQGVYTALPMLIAEELEVPLSNVTLDHAPPNEKLFLDPLLGGQ 132 Query: 118 ATGNSNAMRGAWQPMRKAGATAKAMLVAAAAKRWNVEPGTCRAENGEVHHAASGRKLGYG 177 TG S ++R AW+P+R+AGATA+ +LVAAAAK+WNV+P TCRAENGEV H SGR+ YG Sbjct: 133 LTGGSTSVRYAWEPLRRAGATARTLLVAAAAKQWNVDPATCRAENGEVQHPPSGRRASYG 192 Query: 178 ELATDAAQMPVPENVTLKSPSEFKLIGTPAKRLDTPSKINGTAVYGIDARPPGVKIATLA 237 +LA A+++PVP++V LK P++FKLIG P KRLD+P K++GTA +G+D R PG+ A + Sbjct: 193 QLADAASKLPVPKDVALKQPADFKLIGKPVKRLDSPEKVDGTAQFGLDVRLPGMLYAVIV 252 Query: 238 QSPVFGGRVKRVDDAAAKAVNGVRQIVTLDDAVAVVADHMGAAKKGLAALTIEWDEGAHA 297 SPVFGG V VD+ AA+ + GVRQ+V +D+AVAVV DH AAK+G +AL ++W+EGA A Sbjct: 253 NSPVFGGTVASVDETAARKIPGVRQVVRVDNAVAVVGDHTWAAKRGASALVVKWNEGADA 312 Query: 298 KLATSDIAREL-ETATTKPGAVAQNIGDADKAMAGAATKVEATYQLPFLAHATMEPMNCT 356 K++T DI +L + A GAVA+ GD +A A A T+V+A Y+ PFLAHATMEP+NCT Sbjct: 313 KVSTKDIVADLAQAAANGKGAVARKEGDVGRAFANAKTRVDAVYEQPFLAHATMEPVNCT 372 Query: 357 VHVRPDGCEIWVGSQALSRAQAVAAKVLNMPPEKVVVHNHLL 398 V VR DGCEIWVG+Q +RA+ ++ + PEK+VVHNHLL Sbjct: 373 VQVRADGCEIWVGTQVPTRARDTVQQLTGLAPEKIVVHNHLL 414