BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0002.p         (133 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771571.1| hypothetical protein blr4931 [Bradyrhizobium ja...   216   1e-54
ref|ZP_07027298.1| conserved hypothetical protein [Afipia sp. 1N...   192   1e-47
ref|YP_571780.1| hypothetical protein Nham_4357 [Nitrobacter ham...   188   2e-46
ref|YP_577126.1| hypothetical protein Nham_1852 [Nitrobacter ham...   184   3e-45
ref|ZP_07025765.1| conserved hypothetical protein [Afipia sp. 1N...   180   8e-44

>ref|NP_771571.1| hypothetical protein blr4931 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50196.1| blr4931 [Bradyrhizobium japonicum USDA 110]
          Length = 163

 Score =  216 bits (549), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 101/111 (90%), Positives = 108/111 (97%)

Query: 23  AAHAEIKNYEFQLVQPTVKAGADRIVTVRLVDKTSGKAVPDAVIFSTRLDMAPDGMQEMA 82
           +A AEIKNYEFQL+QPTVKAGADRIVTVRLV+KTSGK VPDAV+F++RLDMAPDGMQEMA
Sbjct: 53  SARAEIKNYEFQLMQPTVKAGADRIVTVRLVNKTSGKTVPDAVVFASRLDMAPDGMQEMA 112

Query: 83  TKVTPMPGTEPGTYRFKATFGMAGRWQLSLGAKVQGETGAVENKLVVTAEQ 133
           TKVTPMPGTEPGTYRFKATFGMAGRWQLSLGAKVQGE+G VENKLVVTAEQ
Sbjct: 113 TKVTPMPGTEPGTYRFKATFGMAGRWQLSLGAKVQGESGTVENKLVVTAEQ 163


>ref|ZP_07027298.1| conserved hypothetical protein [Afipia sp. 1NLS2]
 gb|EFI51054.1| conserved hypothetical protein [Afipia sp. 1NLS2]
          Length = 135

 Score =  192 bits (489), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 93/135 (68%), Positives = 114/135 (84%), Gaps = 2/135 (1%)

Query: 1   MKSFHLARAAAAALMGVAV--TGMAAHAEIKNYEFQLVQPTVKAGADRIVTVRLVDKTSG 58
           MK+  +AR   AAL+G+ +  T  AA A+I +YEFQL++PT++AGADRIVTVRL++K +G
Sbjct: 1   MKTSFVARLLFAALVGLLIMSTPKAALADINDYEFQLIEPTIQAGADRIVTVRLLNKKTG 60

Query: 59  KAVPDAVIFSTRLDMAPDGMQEMATKVTPMPGTEPGTYRFKATFGMAGRWQLSLGAKVQG 118
           K V DAVIF++RLDMAPDGMQEM TKV PMPGTEPG+YRFKA F MAGRWQLSL A+VQG
Sbjct: 61  KPVSDAVIFASRLDMAPDGMQEMVTKVVPMPGTEPGSYRFKANFSMAGRWQLSLRARVQG 120

Query: 119 ETGAVENKLVVTAEQ 133
           ETG VE+KLVVTA++
Sbjct: 121 ETGTVESKLVVTAQK 135


>ref|YP_571780.1| hypothetical protein Nham_4357 [Nitrobacter hamburgensis X14]
 gb|ABE64948.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 135

 Score =  188 bits (478), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 91/135 (67%), Positives = 110/135 (81%), Gaps = 2/135 (1%)

Query: 1   MKSFHLARAAAAALMGVAVTG--MAAHAEIKNYEFQLVQPTVKAGADRIVTVRLVDKTSG 58
           MK+F L RA  AAL+   + G  MAA A+IK+Y+F+LV  TV+AG D+++TVRL++  +G
Sbjct: 1   MKTFTLTRAVQAALIAAMMGGASMAALADIKDYKFELVDQTVQAGPDKVITVRLLNTKTG 60

Query: 59  KAVPDAVIFSTRLDMAPDGMQEMATKVTPMPGTEPGTYRFKATFGMAGRWQLSLGAKVQG 118
           K VPDAVIF++RLDM PDGMQEM TKV  +P  EPGTYRFKATFGMAGRWQLSLGAKVQG
Sbjct: 61  KPVPDAVIFASRLDMTPDGMQEMVTKVEAVPAAEPGTYRFKATFGMAGRWQLSLGAKVQG 120

Query: 119 ETGAVENKLVVTAEQ 133
           ETG VENK V+TA+Q
Sbjct: 121 ETGTVENKFVITAQQ 135


>ref|YP_577126.1| hypothetical protein Nham_1852 [Nitrobacter hamburgensis X14]
 gb|ABE62666.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 136

 Score =  184 bits (468), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 89/136 (65%), Positives = 109/136 (80%), Gaps = 3/136 (2%)

Query: 1   MKSFHLARAAAAALMGVAVTGMA---AHAEIKNYEFQLVQPTVKAGADRIVTVRLVDKTS 57
           M S   +RA   AL+ +A  GMA   A A I +Y+F+LV  TV+AG D+++TVRL+D  +
Sbjct: 1   MNSSRYSRALRGALIAMAAIGMAGTAALANINDYKFELVDQTVQAGPDKVITVRLMDTKT 60

Query: 58  GKAVPDAVIFSTRLDMAPDGMQEMATKVTPMPGTEPGTYRFKATFGMAGRWQLSLGAKVQ 117
           GK VPDAVIF+TRLDMAPDGMQEMATK+T  PG+EPG Y+FKATFGMAGRWQLSLGAKVQ
Sbjct: 61  GKPVPDAVIFATRLDMAPDGMQEMATKITQTPGSEPGVYKFKATFGMAGRWQLSLGAKVQ 120

Query: 118 GETGAVENKLVVTAEQ 133
           GETG VEN+ V+TA++
Sbjct: 121 GETGTVENQFVITAQK 136


>ref|ZP_07025765.1| conserved hypothetical protein [Afipia sp. 1NLS2]
 gb|EFI52907.1| conserved hypothetical protein [Afipia sp. 1NLS2]
          Length = 136

 Score =  180 bits (456), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 83/126 (65%), Positives = 105/126 (83%)

Query: 8   RAAAAALMGVAVTGMAAHAEIKNYEFQLVQPTVKAGADRIVTVRLVDKTSGKAVPDAVIF 67
           R A  A+  +     AA A+IK+Y+F+L+  TV+AG D+++ V+L++  +GK VPDAVIF
Sbjct: 11  RGALIAMAAIGAASTAAFADIKDYKFELIDQTVQAGPDKVIAVKLINNKTGKPVPDAVIF 70

Query: 68  STRLDMAPDGMQEMATKVTPMPGTEPGTYRFKATFGMAGRWQLSLGAKVQGETGAVENKL 127
           + RLDMAPDGMQEMATK+TPMPG+EPG Y+FKATFGMAGRWQLSLGAKVQGETG VENKL
Sbjct: 71  AIRLDMAPDGMQEMATKITPMPGSEPGIYKFKATFGMAGRWQLSLGAKVQGETGTVENKL 130

Query: 128 VVTAEQ 133
           V+TA++
Sbjct: 131 VITAQK 136