BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0131.p (988 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003009476.1| tyramine oxidase [Paenibacillus sp. JDR-2] >... 353 1e-94 ref|YP_485605.1| methyltransferase [Rhodopseudomonas palustris H... 345 2e-92 ref|YP_001993027.1| S-adenosyl-methyltransferase MraW [Rhodopseu... 345 3e-92 ref|YP_570527.1| S-adenosyl-methyltransferase MraW [Rhodopseudom... 343 9e-92 sp|Q133W3.2|RSMH_RHOPS RecName: Full=Ribosomal RNA small subunit... 343 1e-91 >ref|YP_003009476.1| tyramine oxidase [Paenibacillus sp. JDR-2] gb|ACS99389.1| Primary-amine oxidase [Paenibacillus sp. JDR-2] Length = 765 Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 193/461 (41%), Positives = 263/461 (57%), Gaps = 17/461 (3%) Query: 40 HPMDGLTTDEIRSVSDILRGAGKLDDSARVVSMSVEEDPKDEVRAWK---PGQPFT--RR 94 +P++ LT+ EI +IL+ GK D+ R ++++ PK++V WK G T R Sbjct: 132 NPLNPLTSSEIAETVNILKAEGKFGDNYRFTEITLKAPPKEQV--WKFALEGTEVTAHRC 189 Query: 95 ASATLLSGGHLYEAHIDLAARSLLGWQEVRDHEAALTIDELISAGDLPKQDPRWIAAMAK 154 A+ +L G H+ E +DLA + + WQ + + +D+ + ++ + AA+ K Sbjct: 190 AAVVILDGKHVIEGTVDLATKKVTAWQPIEGAHGMVLLDDFGTVQTAIEESEEYAAALKK 249 Query: 155 RGITDFRNVMCLPLTVGPV--SDPALRGRRLLNVPCVDTTGAANNLWGKPIENLFVQVDL 212 RGI D + V+ PLTVG D + +RLL V TG N W PIENL VDL Sbjct: 250 RGINDVKQVVSTPLTVGYFDGKDELQQDKRLLKVVAYLNTGDGN-YWAHPIENLVAVVDL 308 Query: 213 KSKTVLSVTDLGVVPPPPQTPSHAYADSGTYRKPPKPIEITAPEGSNVKVEGGQVRWDNW 272 + K V+ + D GVVP P + + + T P KP+EIT PEG N + G + W NW Sbjct: 309 EQKKVIKIEDAGVVPIPMKATPYD-GSNMTAATPSKPLEITEPEGKNYTITGNTIHWQNW 367 Query: 273 SFHVRLEPRVGAVLSLIRYDDHGTLRDIAYQISASEMFVPYMDPAPTWSFRAYMDIGEYG 332 FH+RL+ RVG +LS + Y+D G R I Y+ S M VPY DP W F+AY+D GEYG Sbjct: 368 DFHLRLDSRVGPILSTVTYNDQGKKRKIMYEGSLGGMIVPYGDPDVGWYFKAYLDSGEYG 427 Query: 333 FGVLSSELQRGVDCPEGAHYLDLTISDTKGAPVVSKGAVCIFERPTGDPIWRHSELINN- 391 G L+S L RG D P+ A LD TI+D GA + GA+ IFER G P ++H E+ N Sbjct: 428 MGTLTSSLARGKDVPDNAVLLDATIADYTGAAMNIPGAMAIFERYAG-PEYKHQEMGQNN 486 Query: 392 -TAEVRPNNELVVRMAPVVGNYDYLVDYVFDRAGNIDVRLGAYGIDATKGVASKTLSDPT 450 +AE R ELVVR VGNYDY+ D+VF + G I + GA GI+A KGV S T+ D T Sbjct: 487 VSAERR---ELVVRWISTVGNYDYIFDWVFAQNGTIGINAGATGIEAVKGVESSTMHDET 543 Query: 451 AAQDTAFGTLVDERLLAVNHDHYMTFRIDMDVDGTSNRLVE 491 AA DT +GTL+D ++ H H FR+DMDVDG N L+E Sbjct: 544 AADDTKYGTLIDHNIVGTTHQHIYNFRLDMDVDGEQNSLME 584 >ref|YP_485605.1| methyltransferase [Rhodopseudomonas palustris HaA2] sp|Q2IYL6.1|RSMH_RHOP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gb|ABD06694.1| methyltransferase [Rhodopseudomonas palustris HaA2] Length = 337 Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 179/247 (72%), Positives = 204/247 (82%), Gaps = 4/247 (1%) Query: 464 RLLAVNHDHY-MTFRIDMDVDGTSNRL--VEDRFSNLAEVCASQGVGAVDGVVMDVGVSS 520 R++A++ D + D+ V G RL VEDRFSNLAEVCA+QG AVDGVVMD+GVSS Sbjct: 49 RVIAIDRDRSAIAGGFDL-VQGAGGRLTLVEDRFSNLAEVCAAQGAPAVDGVVMDIGVSS 107 Query: 521 MQLDQAERGFSFRLGGPLDMRMAQSGPTAADVVAAASEKQLADIIYVFGEERHSRGVARA 580 MQ+DQA+RGFSFR GPLDMRM GPTAADVVA ASE LA+IIY+FGEE+ SR VARA Sbjct: 108 MQVDQADRGFSFRQDGPLDMRMGTDGPTAADVVARASETDLANIIYIFGEEKFSRHVARA 167 Query: 581 IVAARKDAPITTTDALADIVAKVVRAKPNEIHPATRTFQALRIFVNEELDELYLALAAAE 640 ++AARK+APITTT ALADIVA VVRAKP +IHPATRTFQALRIFVNEELDELY ALAAAE Sbjct: 168 VIAARKEAPITTTKALADIVASVVRAKPGQIHPATRTFQALRIFVNEELDELYQALAAAE 227 Query: 641 RVLKPGGRLVVVSFHSLEDRIVKNFLSLRGKVSAGSRHLPEVAHSAPSFQILTKRPVTPD 700 RVLKPGGRL VV+FHSLEDRIVK FL+ R +V GSRHLPE+A +APSF +LTKRP T Sbjct: 228 RVLKPGGRLAVVTFHSLEDRIVKTFLAERSRVGGGSRHLPELAQAAPSFTVLTKRPTTAG 287 Query: 701 EAELAAK 707 +AE+AA Sbjct: 288 DAEVAAN 294 >ref|YP_001993027.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris TIE-1] sp|B3QFN9.1|RSMH_RHOPT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gb|ACF02552.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris TIE-1] Length = 332 Score = 345 bits (884), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 172/219 (78%), Positives = 189/219 (86%) Query: 489 LVEDRFSNLAEVCASQGVGAVDGVVMDVGVSSMQLDQAERGFSFRLGGPLDMRMAQSGPT 548 LV+DRFSNLA+VCA+QG VDGVVMD+GVSSMQLDQAERGFSFR GPLDMRM + GP+ Sbjct: 76 LVQDRFSNLADVCAAQGAATVDGVVMDIGVSSMQLDQAERGFSFRFDGPLDMRMGRDGPS 135 Query: 549 AADVVAAASEKQLADIIYVFGEERHSRGVARAIVAARKDAPITTTDALADIVAKVVRAKP 608 AADVVA ASE LA+IIY+FGEER+SR VARAIVAAR DAPITTT ALADIVAKVVRAKP Sbjct: 136 AADVVARASETDLANIIYIFGEERYSRHVARAIVAARSDAPITTTKALADIVAKVVRAKP 195 Query: 609 NEIHPATRTFQALRIFVNEELDELYLALAAAERVLKPGGRLVVVSFHSLEDRIVKNFLSL 668 EIHPATRTFQ LRIFVNEELDEL+ AL AAERVLKPGGRL VVSFHSLEDRIVK FL+ Sbjct: 196 GEIHPATRTFQGLRIFVNEELDELHQALDAAERVLKPGGRLAVVSFHSLEDRIVKTFLTE 255 Query: 669 RGKVSAGSRHLPEVAHSAPSFQILTKRPVTPDEAELAAK 707 R K GSRHLPEVA +APSF +L+KRP+ +AE+AA Sbjct: 256 RSKTGGGSRHLPEVAQAAPSFTLLSKRPIVAGDAEVAAN 294 >ref|YP_570527.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris BisB5] gb|ABE40626.1| methyltransferase [Rhodopseudomonas palustris BisB5] Length = 398 Score = 343 bits (880), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 176/249 (70%), Positives = 204/249 (81%), Gaps = 4/249 (1%) Query: 462 DERLLAVNHD-HYMTFRIDMDVDGTSNRL--VEDRFSNLAEVCASQGVGAVDGVVMDVGV 518 D R++A++ D + + D+ V TS RL VEDRFSNLA+VC +QG +VDGVVMD+GV Sbjct: 113 DTRVIAIDRDRNAIADGFDL-VQSTSGRLTLVEDRFSNLADVCEAQGAESVDGVVMDIGV 171 Query: 519 SSMQLDQAERGFSFRLGGPLDMRMAQSGPTAADVVAAASEKQLADIIYVFGEERHSRGVA 578 SSMQ+DQA+RGFSFRL GPLDMRM GPTAADVVA ASE LA+IIY+FGEE++SR VA Sbjct: 172 SSMQVDQADRGFSFRLDGPLDMRMGNDGPTAADVVAHASEADLANIIYIFGEEKYSRHVA 231 Query: 579 RAIVAARKDAPITTTDALADIVAKVVRAKPNEIHPATRTFQALRIFVNEELDELYLALAA 638 RAI+AARKDAPI TT ALADIVA VVR+KP +IHPATRTFQALRIFVNEELDELY AL+A Sbjct: 232 RAIIAARKDAPIVTTKALADIVATVVRSKPGQIHPATRTFQALRIFVNEELDELYQALSA 291 Query: 639 AERVLKPGGRLVVVSFHSLEDRIVKNFLSLRGKVSAGSRHLPEVAHSAPSFQILTKRPVT 698 AERVLKPGGRL VVSFHSLEDRIVK FL R + GSRHLPE+ +APSF +LTKRP+ Sbjct: 292 AERVLKPGGRLAVVSFHSLEDRIVKTFLGDRSRTGGGSRHLPELTQAAPSFTVLTKRPIV 351 Query: 699 PDEAELAAK 707 +AE+AA Sbjct: 352 AGDAEVAAN 360 >sp|Q133W3.2|RSMH_RHOPS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 332 Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 176/249 (70%), Positives = 204/249 (81%), Gaps = 4/249 (1%) Query: 462 DERLLAVNHD-HYMTFRIDMDVDGTSNRL--VEDRFSNLAEVCASQGVGAVDGVVMDVGV 518 D R++A++ D + + D+ V TS RL VEDRFSNLA+VC +QG +VDGVVMD+GV Sbjct: 47 DTRVIAIDRDRNAIADGFDL-VQSTSGRLTLVEDRFSNLADVCEAQGAESVDGVVMDIGV 105 Query: 519 SSMQLDQAERGFSFRLGGPLDMRMAQSGPTAADVVAAASEKQLADIIYVFGEERHSRGVA 578 SSMQ+DQA+RGFSFRL GPLDMRM GPTAADVVA ASE LA+IIY+FGEE++SR VA Sbjct: 106 SSMQVDQADRGFSFRLDGPLDMRMGNDGPTAADVVAHASEADLANIIYIFGEEKYSRHVA 165 Query: 579 RAIVAARKDAPITTTDALADIVAKVVRAKPNEIHPATRTFQALRIFVNEELDELYLALAA 638 RAI+AARKDAPI TT ALADIVA VVR+KP +IHPATRTFQALRIFVNEELDELY AL+A Sbjct: 166 RAIIAARKDAPIVTTKALADIVATVVRSKPGQIHPATRTFQALRIFVNEELDELYQALSA 225 Query: 639 AERVLKPGGRLVVVSFHSLEDRIVKNFLSLRGKVSAGSRHLPEVAHSAPSFQILTKRPVT 698 AERVLKPGGRL VVSFHSLEDRIVK FL R + GSRHLPE+ +APSF +LTKRP+ Sbjct: 226 AERVLKPGGRLAVVSFHSLEDRIVKTFLGDRSRTGGGSRHLPELTQAAPSFTVLTKRPIV 285 Query: 699 PDEAELAAK 707 +AE+AA Sbjct: 286 AGDAEVAAN 294