BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0130.p (341 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001241135.1| ABC transporter permease [Bradyrhizobium sp.... 350 1e-94 ref|ZP_03263864.1| inner-membrane translocator [Burkholderia sp.... 256 3e-66 ref|ZP_01550186.1| ABC transporter permease protein [Stappia agg... 234 1e-59 ref|YP_164927.1| branched-chain amino acid ABC transporter, perm... 229 4e-58 ref|YP_002978902.1| inner-membrane translocator [Rhizobium legum... 211 2e-52 >ref|YP_001241135.1| ABC transporter permease [Bradyrhizobium sp. BTAi1] gb|ABQ37229.1| amino acid/amide ABC transporter membrane protein 2, HAAT family [Bradyrhizobium sp. BTAi1] Length = 331 Score = 350 bits (899), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 201/307 (65%), Positives = 244/307 (79%) Query: 21 AGAPFVLNEGFLRLATECLLLLTMAQMWNLLAGYAGLVSLGHQVFIAFGAYALFLTSGWL 80 AGAPFVL +G LRL TE LL+LTMAQMWNLLAGYAGLVS GHQVF+A GAYALFL + L Sbjct: 17 AGAPFVLGDGALRLWTEALLILTMAQMWNLLAGYAGLVSFGHQVFVAAGAYALFLAAEAL 76 Query: 81 EVTPIWVLPVAPLVAGAVAAIIAFPLFRLRDAYFSIAMWVFAEIIGAFTMKSQAVGGTSG 140 V+P WVLP+APL A +AA++A PLFRLRDAYFSI +WVF+EI+ KS G T+G Sbjct: 77 NVSPYWVLPLAPLAAAFLAALVALPLFRLRDAYFSIGIWVFSEIVATLVTKSSLTGATAG 136 Query: 141 VPLATSKLIDFDWFEPTMFWLAGGLTLITIAALYRMMTSSFGLGLMSVRDNDLAAMSVGV 200 +PL TS L+D DWFEPT+FW+A L L A L +M S FGLG+MSVRDND+AAMSVGV Sbjct: 137 LPLKTSSLMDLDWFEPTLFWIASVLALAATAGLLLLMRSEFGLGIMSVRDNDVAAMSVGV 196 Query: 201 DVRHNRFVAFVLSAAGCGLAGALSFMGNLFIAPLAAFDVNWSVYMMFIVIIGGIGTLEGP 260 DV+ NR + FV+SAAGCG AGA++F+ NL+++P +AFDV+W V MMFIV+IGGIGTLEGP Sbjct: 197 DVQRNRLIVFVISAAGCGAAGAVNFLSNLYLSPASAFDVSWVVNMMFIVVIGGIGTLEGP 256 Query: 261 ILGVIIFFGLRELMTGPLGLSGGWYLVGLGIIAVGVMIVAPRGIWPALRDRIGVRLLDVH 320 I+G ++FF LRE++TG LGLSGGWYLV LG +AVG M+ +PRG+WPAL R G+R + V Sbjct: 257 IIGTLLFFALREIVTGQLGLSGGWYLVALGSVAVGTMLWSPRGLWPALSARWGLRFMSVE 316 Query: 321 GAAPRPA 327 APR A Sbjct: 317 RKAPRLA 323 >ref|ZP_03263864.1| inner-membrane translocator [Burkholderia sp. H160] gb|EEA04608.1| inner-membrane translocator [Burkholderia sp. H160] Length = 321 Score = 256 bits (655), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 150/309 (48%), Positives = 204/309 (66%) Query: 14 IVLVAVIAGAPFVLNEGFLRLATECLLLLTMAQMWNLLAGYAGLVSLGHQVFIAFGAYAL 73 ++ A +A AP VL +G L L E +++ ++ MWN LAGYAGLVSLGHQ++ G Y L Sbjct: 12 VLFAAFLAIAPLVLGDGALHLVNEMFIIIVISSMWNFLAGYAGLVSLGHQMYFGAGGYVL 71 Query: 74 FLTSGWLEVTPIWVLPVAPLVAGAVAAIIAFPLFRLRDAYFSIAMWVFAEIIGAFTMKSQ 133 F+ + ++P +PVA + AAIIA LFRLRDAYF+IA WV AE++ K+ Sbjct: 72 FMFANSAGMSPYAGIPVAFVFGACAAAIIAPALFRLRDAYFAIASWVVAEVVTISVQKTD 131 Query: 134 AVGGTSGVPLATSKLIDFDWFEPTMFWLAGGLTLITIAALYRMMTSSFGLGLMSVRDNDL 193 A+GG SGV L+ IDF FE MF + G + L+T+ ++ S GL M VRDN+L Sbjct: 132 ALGGISGVSLSDISGIDFTRFESQMFLIGGAMVLLTVLGFLWLLRSKPGLAFMCVRDNEL 191 Query: 194 AAMSVGVDVRHNRFVAFVLSAAGCGLAGALSFMGNLFIAPLAAFDVNWSVYMMFIVIIGG 253 AA ++GVDV NRF+A+VLSAAGC AGALS + L + P A +W+ M F+V++GG Sbjct: 192 AARTIGVDVWRNRFLAYVLSAAGCAAAGALSCLSGLTVQPGNALSADWTAIMTFVVVVGG 251 Query: 254 IGTLEGPILGVIIFFGLRELMTGPLGLSGGWYLVGLGIIAVGVMIVAPRGIWPALRDRIG 313 IGTLEGPILG +I+F LR+L+T L LSG WYLV +G +AV M+ +P G+WP LRD++G Sbjct: 252 IGTLEGPILGTLIYFVLRQLLTVVLPLSGTWYLVAMGAVAVATMLYSPAGLWPLLRDKLG 311 Query: 314 VRLLDVHGA 322 + L + A Sbjct: 312 MNWLAIRRA 320 >ref|ZP_01550186.1| ABC transporter permease protein [Stappia aggregata IAM 12614] gb|EAV41219.1| ABC transporter permease protein [Stappia aggregata IAM 12614] Length = 340 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 131/312 (41%), Positives = 200/312 (64%), Gaps = 9/312 (2%) Query: 10 AASAIVLVAVIAGAPFVLNEGFLRLATECLLLLTMAQMWNLLAGYAGLVSLGHQVFIAFG 69 A + ++++ V+ AP +RL +E L L++A +WNLLAGYAGLVS+G Q F+ FG Sbjct: 21 AVAGVLVLIVLVSAPLWAGRADMRLLSEIFLYLSLACLWNLLAGYAGLVSVGQQAFVGFG 80 Query: 70 AYALFLTSGWLEVTPIWVLPVAPLVAGAVAAIIAFPLFRLRDAYFSIAMWVFAEIIGAFT 129 Y LF + + ++P+ +P+A L+ +A +A +FRLR AYF+I WV AE+ Sbjct: 81 GYMLFALAIFAGLSPLAAIPLAGLLGAVIAVPVALLIFRLRGAYFAIGTWVIAEVFRLSF 140 Query: 130 MKSQAVGGTSGVPLATSKLIDF----DWFEPTMFWLAGGLTLITIAALYRMMTSSFGLGL 185 + A+GG SG L + + D E T +WLA + +I +A +Y ++ S GL L Sbjct: 141 AQVSALGGGSGTSLPVAIVRDMASSRSMREATTYWLALAMAVIVLAVIYLLLRSRNGLAL 200 Query: 186 MSVRDNDLAAMSVGVDVRHNRFVAFVLSAAGCGLAGALSFMGNLFIAPLAAFDVN-WSVY 244 ++RD++LA+ S G+D+ N+FV +VL+A + GAL F+ L I+P AAF VN W+ + Sbjct: 201 TAIRDSELASESFGIDIWRNKFVVYVLTAGLTAMTGALIFLQKLRISPDAAFSVNDWTAF 260 Query: 245 MMFIVIIGGIGTLEGPILGVIIFFGLRELMTGPLGLSGGWYLVGLGIIAVGVMIVAPRGI 304 ++FIV+IGGIGTLEGPI+GVI+FF LRE ++ G YL+ LG++A+ VM+ AP+G+ Sbjct: 261 VIFIVVIGGIGTLEGPIIGVIVFFLLRETLSDL----GTVYLLILGVVAIAVMLKAPKGL 316 Query: 305 WPALRDRIGVRL 316 W L++R G+ L Sbjct: 317 WGTLKERTGLEL 328 >ref|YP_164927.1| branched-chain amino acid ABC transporter, permease protein [Ruegeria pomeroyi DSS-3] gb|AAV97234.1| branched-chain amino acid ABC transporter, permease protein [Ruegeria pomeroyi DSS-3] Length = 312 Score = 229 bits (585), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 125/281 (44%), Positives = 186/281 (66%), Gaps = 4/281 (1%) Query: 24 PFVLNEGFLRLATECLLLLTMAQMWNLLAGYAGLVSLGHQVFIAFGAYALFLTSGWLEVT 83 P+ L G L L TE L+LL +AQ WNLLAG+ GL+SLGH F+A GAY LF + L ++ Sbjct: 17 PYWLGGGALALVTEMLILLAIAQSWNLLAGFGGLLSLGHHAFVAIGAYLLFAVTRDLPIS 76 Query: 84 PIWVLPVAPLVAGAVAAIIAFPLFRLRDAYFSIAMWVFAEIIGAFTMKSQAVGGTSGVPL 143 P ++P + A +A ++ LFRLR+ YF++ MWV AEI+ + G +SG+PL Sbjct: 77 PYAMIPFCGVGAALLALVLTPILFRLREVYFAVGMWVAAEIVKIVVSRMDYFGASSGLPL 136 Query: 144 ATSKLIDFDWFEPTMFWLAGGLTLITIAALYRMMTSSFGLGLMSVRDNDLAAMSVGVDVR 203 ++ ID +WLA LT L+ + S +GL + ++RD+++AA S+GV Sbjct: 137 FAARRIDTSLLPSMGYWLALALTAGLCVGLWWLGRSPWGLHVHAMRDDEIAARSLGVKTG 196 Query: 204 HNRFVAFVLSAAGCGLAGALSFMGNLFIAPLAAFDVNWSVYMMFIVIIGGIGTLEGPILG 263 + + F+LSAAG G+AGA+ FMG+L+++P+AAFD+NW+VY +FI +IGG+GT+ GP++G Sbjct: 197 RIKALLFILSAAGSGMAGAIGFMGSLYVSPIAAFDINWTVYAIFICVIGGLGTIRGPVIG 256 Query: 264 VIIFFGLRELMTGPLGLSGGWYLVGLGIIAVGVMIVAPRGI 304 V++F LRE ++ S GW L+ LG+IA+ +MI APRGI Sbjct: 257 VMLFVALREALSA----SPGWNLIALGLIAMLLMIFAPRGI 293 >ref|YP_002978902.1| inner-membrane translocator [Rhizobium leguminosarum bv. trifolii WSM1325] gb|ACS60351.1| inner-membrane translocator [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 361 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 126/313 (40%), Positives = 188/313 (60%), Gaps = 20/313 (6%) Query: 24 PFVLNEGFLRLATECLLLLTMAQMWNLLAGYAGLVSLGHQVFIAFGAYALFLTSGWLEVT 83 PF+++ G ++ L +L +AQ WNLLAGYAGL+S+G QVF+ FGAY +F V Sbjct: 35 PFIVSRGVIQDLFFILTMLVLAQNWNLLAGYAGLISVGQQVFVGFGAYTMFGCVILFGVD 94 Query: 84 PIWVLPVAPLVAGAVAAIIAFPLFRLRDAYFSIAMWVFAEIIGAFTMKSQAVGGTSGVPL 143 P+ + +A +++ A+A AF FRL YF+I WV AE++ + +A+GG +G L Sbjct: 95 PVVAILIAGVLSAALAIPTAFFTFRLYGPYFAIGTWVVAEVVRLLLAQWKALGGGTGTSL 154 Query: 144 ATSKLIDF-------DWF--------EPTMFWLAGGLTLITIAALYRMMTSSFGLGLMSV 188 D D F + +WLA L + TI +Y ++ S GLGL +V Sbjct: 155 PREATRDMMGVGAMRDLFGMKASEAGDTLTYWLALILAVATIGFIYGLLRSKQGLGLAAV 214 Query: 189 RDNDLAAMSVGVDVRHNRFVAFVLSAAGCGLAGALSFMGNLFIAPLAAFDV-NWSVYMMF 247 RDN+ AA +VGVD R + + ++ +A G+AGAL ++ I+P AAF V +W+ Y++F Sbjct: 215 RDNEQAARAVGVDARRMKTLVYLATAFMTGIAGALIYVQKARISPDAAFSVTDWTAYVIF 274 Query: 248 IVIIGGIGTLEGPILGVIIFFGLRELMTGPLGLSGGWYLVGLGIIAVGVMIVAPRGIWPA 307 IV+ GGIGT+EGPILGVIIFF L+ L+ G WYL+ LG++ + +M++APRG+W Sbjct: 275 IVVTGGIGTIEGPILGVIIFFLLQNLLAD----YGSWYLLMLGLLGIAIMLLAPRGLWGL 330 Query: 308 LRDRIGVRLLDVH 320 +R G++L V Sbjct: 331 FSERTGIQLFPVR 343