BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0125.p (341 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_01768679.1| cobalamin synthesis protein/P47K [Burkholderi... 298 8e-79 ref|ZP_08388339.1| cobalamin synthesis cobW C-terminal domain pr... 291 9e-77 ref|ZP_05929265.1| cobalamin synthesis protein P47K [Brucella ab... 289 5e-76 ref|ZP_05994886.1| cobalamin synthesis protein P47K [Brucella su... 288 1e-75 ref|YP_421669.1| putative GTPase [Magnetospirillum magneticum AM... 287 2e-75 >ref|ZP_01768679.1| cobalamin synthesis protein/P47K [Burkholderia pseudomallei 305] ref|ZP_02494355.1| Putative GTPase [Burkholderia pseudomallei NCTC 13177] gb|EBA46590.1| cobalamin synthesis protein/P47K [Burkholderia pseudomallei 305] Length = 378 Score = 298 bits (763), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 156/327 (47%), Positives = 209/327 (63%), Gaps = 16/327 (4%) Query: 7 IPVTVLTGFLGSGKTTVLNHLLRQPELGGVVAIINEFGEVALDHLLV-ESSEDRLALLDN 65 IPVT+LTGFLGSGKTTVLNHL+RQPEL + IINEFGE+ LDHLLV S+E+ + + + Sbjct: 10 IPVTLLTGFLGSGKTTVLNHLVRQPELADALVIINEFGEMGLDHLLVAHSTENVVMEMSS 69 Query: 66 GCICCSVREDLIETLADLASRRADGTIPPFHRVLVETTGLADPVPVLHTLMTAPDVVGRY 125 GC+CC++R DL++TL D+A R + F RVL+ETTGLADP P++HTLMT P + +Y Sbjct: 70 GCLCCTIRGDLVKTLRDIAWRFSRNGQRQFRRVLIETTGLADPAPIIHTLMTHPQIASKY 129 Query: 126 HIDGVVATVDAVNGTHTLAAHSEAVRQIAVADRLLVTKTDLAAEDALARLDAQLAAINPV 185 +DG+VAT+D G TL H EAV+Q AVAD LL+TK DLA ++A L +L INP Sbjct: 130 QLDGIVATIDLAAGMQTLDRHKEAVKQAAVADMLLLTKADLATDEARTALQRRLDGINPA 189 Query: 186 ATRSYVRNGIVDPAKVLDAGLFDPAARSADVVRWFDLAAQVANASHHHADHHCEGEACGH 245 A R VRNG + P KVL+ GLF +++ DV RW A ++ H H DH H Sbjct: 190 AARWEVRNGEIAPQKVLNLGLFAAESKTPDVARWLSEEAYADSSPHQHHDHEAHAHVHVH 249 Query: 246 HSH--------------HAHDAGVSSYSLVIDEPIQREAFARWLDYVAALKGEDLLRFKA 291 H + HD + ++ +DEPI E A WL+ + + G ++LR K Sbjct: 250 HGGDSHTHDHPHDHHDVNRHDDHIRAFCFSVDEPIAEEELAAWLEVLMSFVGSNILRVKG 309 Query: 292 IVHVAEQPDAPMVVHGVQHVFHPPITL 318 I+++ E + P+VVHGVQH+FHPP+ L Sbjct: 310 ILNI-EGSEQPIVVHGVQHIFHPPVPL 335 >ref|ZP_08388339.1| cobalamin synthesis cobW C-terminal domain protein [Sphingomonas sp. S17] gb|EGI55310.1| cobalamin synthesis cobW C-terminal domain protein [Sphingomonas sp. S17] Length = 365 Score = 291 bits (746), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 162/314 (51%), Positives = 201/314 (64%), Gaps = 13/314 (4%) Query: 6 QIPVTVLTGFLGSGKTTVLNHLLRQPELGGVVAIINEFGEVALDH-LLVESSEDRLALLD 64 +IPV+VLTGFLGSGKTTVLNHL+R P++ + IINEFG + LDH L+ S+ED L + Sbjct: 11 RIPVSVLTGFLGSGKTTVLNHLVRSPDMARALVIINEFGAIGLDHDLVARSNEDLLVEMM 70 Query: 65 NGCICCSVREDLIETLADLASRRADGTIPPFHRVLVETTGLADPVPVLHTLMTAPDVVGR 124 GC+CC++R DL TL D R A F RV++ETTGLADP P+LHTLMT P + Sbjct: 71 GGCLCCTIRGDLARTLRDAPWRFARDGECWFDRVVIETTGLADPAPILHTLMTDPQLARL 130 Query: 125 YHIDGVVATVDAVNGTHTLAAHSEAVRQIAVADRLLVTKTDLAAEDALARLDAQLAAINP 184 Y +D V+ATVDA G TL A EAV+Q AVADRLL+TKTDLA E A + +LAA+NP Sbjct: 131 YRLDAVIATVDAAAGMATLDAQPEAVKQAAVADRLLLTKTDLAEEATQAAIRTRLAALNP 190 Query: 185 VATRSYVRNGIVDPAKVLDAGLFDPAARSADVVRWFDLAAQVANASHHHADHHCEGEACG 244 A V NG+VDPA + D GL+DPA++S DV RW A +H Sbjct: 191 GAPIVPVSNGVVDPALLFDVGLWDPASKSDDVNRWLADEA-----------YHAGHHHHH 239 Query: 245 HHSHHAHDAGVSSYSLVIDEPIQREAFARWLDYVAALKGEDLLRFKAIVHVAEQPDAPMV 304 HH + HD + + L D P+ AF RWL + KG DLLR K I+++A DAP+V Sbjct: 240 HHDVNRHDKDIQATCLTFDTPLDPVAFDRWLGLLTMFKGADLLRVKGIINIAGH-DAPVV 298 Query: 305 VHGVQHVFHPPITL 318 VHGVQHVFHPPI L Sbjct: 299 VHGVQHVFHPPIEL 312 >ref|ZP_05929265.1| cobalamin synthesis protein P47K [Brucella abortus bv. 3 str. Tulya] gb|EEX83452.1| cobalamin synthesis protein P47K [Brucella abortus bv. 3 str. Tulya] Length = 385 Score = 289 bits (739), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 159/327 (48%), Positives = 206/327 (62%), Gaps = 16/327 (4%) Query: 5 DQIPVTVLTGFLGSGKTTVLNHLLRQPELGGVVAIINEFGEVALDHLLVESSEDRLALLD 64 D IPV+VLTGFLGSGKTT+LN LL+ P L IINEFGEV++DHLLVE + + + L Sbjct: 3 DPIPVSVLTGFLGSGKTTLLNRLLKDPALSDTAVIINEFGEVSIDHLLVEQASEGVIELA 62 Query: 65 NGCICCSVREDLIETLADLASRRADGTIPPFHRVLVETTGLADPVPVLHTLMTAPDVVGR 124 +GC+CC+VR +L++TLADL R G I RV++ETTGLADP PVLH++M P + Sbjct: 63 DGCLCCTVRGELVDTLADLIDRLQTGRIKALKRVIIETTGLADPAPVLHSIMGHPLLTQV 122 Query: 125 YHIDGVVATVDAVNGTHTLAAHSEAVRQIAVADRLLVTKTDL-AAEDALARLDAQLAAIN 183 + +DGV+ATVDAVNG TL H EAV+Q A+ADR+++TKTDL A+ L L A+L +N Sbjct: 123 FRLDGVLATVDAVNGMATLDNHEEAVKQAAMADRIILTKTDLPEAQAGLPALKARLRTLN 182 Query: 184 PVATRSYVRNGIVDPAKVLDAGLFDPAARSADVVRWFDLAAQVANASHHHADHHCEGEAC 243 P A A + + GL++P +SADV RW L A+ HH H C G C Sbjct: 183 PGADILEAGEERTGYAALFEFGLYNPQTKSADVRRW--LKAEAYEDEHHGHGHVC-GPDC 239 Query: 244 GH------------HSHHAHDAGVSSYSLVIDEPIQREAFARWLDYVAALKGEDLLRFKA 291 GH ++HH HD + S+SL D PI F +LD + + GE LLR K Sbjct: 240 GHDHHHHDHHNDQGYAHHHHDDAIRSFSLRHDAPIPVSTFEMFLDLLRSTHGEKLLRMKG 299 Query: 292 IVHVAEQPDAPMVVHGVQHVFHPPITL 318 IV +AE PD P+V+HGVQ +FHPP L Sbjct: 300 IVQIAEDPDRPVVIHGVQKIFHPPARL 326 >ref|ZP_05994886.1| cobalamin synthesis protein P47K [Brucella suis bv. 5 str. 513] gb|EEY28856.1| cobalamin synthesis protein P47K [Brucella suis bv. 5 str. 513] Length = 389 Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 159/331 (48%), Positives = 206/331 (62%), Gaps = 20/331 (6%) Query: 5 DQIPVTVLTGFLGSGKTTVLNHLLRQPELGGVVAIINEFGEVALDHLLVESSEDRLALLD 64 D IPV+VLTGFLGSGKTT+LN LL+ P L IINEFGEV++DHLLVE + + + L Sbjct: 3 DPIPVSVLTGFLGSGKTTLLNRLLKDPALSDTAVIINEFGEVSIDHLLVEQASEGVIELA 62 Query: 65 NGCICCSVREDLIETLADLASRRADGTIPPFHRVLVETTGLADPVPVLHTLMTAPDVVGR 124 +GC+CC+VR +L++TLADL R G I RV++ETTGLADP PVLH++M P + Sbjct: 63 DGCLCCTVRGELVDTLADLIDRLQTGRIKALKRVIIETTGLADPAPVLHSIMGHPLLTQV 122 Query: 125 YHIDGVVATVDAVNGTHTLAAHSEAVRQIAVADRLLVTKTDL-AAEDALARLDAQLAAIN 183 + +DGV+ATVDAVNG TL H EAV+Q A+ADR+++TKTDL A+ L L A+L +N Sbjct: 123 FRLDGVLATVDAVNGMATLDNHEEAVKQAAMADRIILTKTDLPEAQAGLPALKARLRTLN 182 Query: 184 PVATRSYVRNGIVDPAKVLDAGLFDPAARSADVVRWFDLAAQVANASHHHADHHCEGEAC 243 P A A + + GL++P +SADV RW L A+ HH H C G C Sbjct: 183 PGADILEAGEERTGYAALFECGLYNPQTKSADVRRW--LKAEAYEDEHHGHGHVC-GPDC 239 Query: 244 GH----------------HSHHAHDAGVSSYSLVIDEPIQREAFARWLDYVAALKGEDLL 287 GH ++HH HD + S+SL D PI F +LD + + GE LL Sbjct: 240 GHDHHHHDHHHDHHNDQGYAHHHHDDAIRSFSLRHDAPIPVSTFEMFLDLLRSTHGEKLL 299 Query: 288 RFKAIVHVAEQPDAPMVVHGVQHVFHPPITL 318 R K IV +AE PD P+V+HGVQ +FHPP L Sbjct: 300 RMKGIVQIAEDPDRPVVIHGVQKIFHPPARL 330 >ref|YP_421669.1| putative GTPase [Magnetospirillum magneticum AMB-1] dbj|BAE51110.1| Putative GTPase [Magnetospirillum magneticum AMB-1] Length = 347 Score = 287 bits (734), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 154/312 (49%), Positives = 204/312 (65%), Gaps = 8/312 (2%) Query: 7 IPVTVLTGFLGSGKTTVLNHLLRQPELGGVVAIINEFGEVALDHLLVESSEDRLALLDNG 66 IPVTVLTGFLGSGKTT+LNHLL QP L +INEFG V LDHLLV + + LL +G Sbjct: 4 IPVTVLTGFLGSGKTTLLNHLLAQPGLADTAVLINEFGAVGLDHLLVRQVAEDVVLLQSG 63 Query: 67 CICCSVREDLIETLADLASRRADGTIPPFHRVLVETTGLADPVPVLHTLMTAPDVVGRYH 126 C+CC+VR DL+E + DL +R G IP F+R+++ETTGLADP P++HTLM+ P + GRY Sbjct: 64 CLCCTVRGDLVEGMRDLFIKRVRGEIPEFNRMIIETTGLADPAPIIHTLMSDPLISGRYK 123 Query: 127 IDGVVATVDAVNGTHTLAAHSEAVRQIAVADRLLVTKTDLAAEDALARLDAQLAAINPVA 186 +DG+VATVDAVNG TL A +EAV+Q+AVADRL++TK D+A A+ L A+L +NP A Sbjct: 124 LDGIVATVDAVNGERTLNAQAEAVKQVAVADRLVLTKADIADPVAVEVLRARLRRLNPAA 183 Query: 187 TRSYVRNGIVDPAKVLDAGLFDPAARSADVVRWFDLAAQVANASHHHADHHCEGEACGHH 246 G +DP+ +LDAGLF+P ++ DV W N + A H + HH Sbjct: 184 PIILAMQGKLDPSDILDAGLFNPGSKIPDVAGWL-------NEEAYRAHQHAHHDHHHHH 236 Query: 247 SHHAHDAGVSSYSLVIDEPIQREAFARWLDYVAALKGEDLLRFKAIVHVAEQPDAPMVVH 306 + HDA + ++ EP+ A L+ + + +GE+LLR K IV+ E D P+ +H Sbjct: 237 DANRHDAHIQAFVFTASEPVSWTALGFALELMISSRGENLLRIKGIVNARESAD-PLAIH 295 Query: 307 GVQHVFHPPITL 318 GVQHVFHPP L Sbjct: 296 GVQHVFHPPAPL 307