BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0119.p (224 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EGD00283.1| LysR family transcriptional regulator [Burkholder... 110 2e-22 ref|YP_260325.1| LuxR family transcriptional regulator [Pseudomo... 97 2e-18 ref|YP_002148042.1| LysR-family transcriptional regulator [Salmo... 96 6e-18 ref|ZP_03214741.1| LysR-family transcriptional regulator [Salmon... 95 7e-18 gb|AAT49800.1| PA4074 [synthetic construct] 95 7e-18 >gb|EGD00283.1| LysR family transcriptional regulator [Burkholderia sp. TJI49] Length = 207 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/200 (35%), Positives = 108/200 (54%), Gaps = 11/200 (5%) Query: 29 AFYEVDGNLTLNRFVLSSNVPPSFHDQYLAGMNRLDPLHPRSASNRPIARLSTALDQCAT 88 A Y D +T++ F +P +FH QYL M RLDP A + P ++ D A Sbjct: 8 ALYICDAGMTID-FFERRGLPDAFHRQYLDDMYRLDPFDENLA-DLPDVDVALLSDHLAH 65 Query: 89 QEA-ATYRAFAGQCGVADMIEFFFRRNDRIVAGMSVLWAPGC--AIPDGSMHIAEKIHDY 145 A A YR F +A+M+E FR + ++AGMSV C + + A H Y Sbjct: 66 DGAGAEYRRFLESFQIANMVEMVFRTGN-VLAGMSVCLPQACDRSTTESICKAAHAFHPY 124 Query: 146 LEFNLT-----SRLSSNADEPARFGLTSREMEVVELLCCGRTNREIGECLNIGLATVKTH 200 + FNL+ ++ S D AR+GL+ RE +V EL+C G +N ++ L++ +ATVKTH Sbjct: 125 ILFNLSVLFKDGKIGSRDDIIARYGLSKREAQVAELICKGFSNGDLARALHVSVATVKTH 184 Query: 201 LIHIFEKLGVETRSAVVAMM 220 L++IF K V R+++V+++ Sbjct: 185 LLNIFAKTSVTNRTSLVSLL 204 >ref|YP_260325.1| LuxR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gb|AAY92489.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens Pf-5] Length = 224 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 64/202 (31%), Positives = 99/202 (49%), Gaps = 12/202 (5%) Query: 22 ILEGSATAFYEVDGNLTLNRFVLSSNVPPSFHDQYLAGMNRLDPLHPR--SASNRPIARL 79 ++ S AFY +D L F L +P H YL DPL PR +A+ RP+ L Sbjct: 24 VVPASLCAFYRIDAQLQARDFSLY-RMPEQMHQAYLQHFRHYDPLQPRHCAAAGRPVLSL 82 Query: 80 STALDQCATQEAATYRAFAGQCGVADMIEFFFRRNDRIVAGMSVLWAPGC---AIPD-GS 135 + E+ Y+ F + GV D++E +R VAG+S+L G ++ + G+ Sbjct: 83 HMGMAHQGHHESEVYQGFLQRHGVLDVVEILACDGERPVAGLSLLRDVGLGHFSVEELGT 142 Query: 136 MHIAEKIHDYLEFNLTSRLSSNADEPARFGLTSREMEVVELLCCGRTNREIGECLNIGLA 195 +H + + + S++ GLT RE E+ LL G N+ I L++GL Sbjct: 143 LHALQGLLEIAALAPWSQVDERLS-----GLTPREREIAWLLRDGADNKTIARRLDLGLP 197 Query: 196 TVKTHLIHIFEKLGVETRSAVV 217 TVKTHLI++F K+G R+ +V Sbjct: 198 TVKTHLINLFRKVGASNRTELV 219 >ref|YP_002148042.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Agona str. SL483] gb|ACH52801.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 248 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 105/225 (46%), Gaps = 30/225 (13%) Query: 6 GRPDPATTQAIQFARGILEGSATAFYEVDGNLTLNRFVLSSNVPPSFHDQYLAGMNRLDP 65 G D T +Q ++ S+ FY V+ L +VL N+ S H QYL LDP Sbjct: 29 GHNDGITLHCLQSIAQLIPLSSAVFYRVNAYLKPEAYVLH-NISNSTHQQYLEHFQPLDP 87 Query: 66 LHPRSASNRPIARLSTALDQCATQEAATYRAFAGQCGVADMIEFFFRRNDRIVAGMSVLW 125 L P + I + CA + Y F V DMIE F RR RI+AG+S++ Sbjct: 88 LSPSRFGQQVITVATMTPGICA-RHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR 146 Query: 126 APGCAIPDGSMH----------IAEKIHDYLE--FNLTSRLSSNADEPARFGLTSREMEV 173 IP S + IHD+L+ NLTS LT++E E+ Sbjct: 147 D----IPFSSEERLRAQAVQPLLGLAIHDFLQEDNNLTS------------ILTAKEREI 190 Query: 174 VELLCCGRTNREIGECLNIGLATVKTHLIHIFEKLGVETRSAVVA 218 V ++C G +N+ I LNI L+TVKTHL +IF K V R+ +V+ Sbjct: 191 VGMVCEGASNKLIARQLNISLSTVKTHLRNIFAKTEVINRTELVS 235 >ref|ZP_03214741.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gb|EDZ03772.1| LysR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 248 Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 72/215 (33%), Positives = 104/215 (48%), Gaps = 10/215 (4%) Query: 6 GRPDPATTQAIQFARGILEGSATAFYEVDGNLTLNRFVLSSNVPPSFHDQYLAGMNRLDP 65 G D T +Q ++ S+ FY V+ L +VL N+ S H QYL LDP Sbjct: 29 GHNDGITLHCLQSIAQLIPLSSAVFYRVNAYLKPEAYVLH-NISNSTHQQYLEHFQPLDP 87 Query: 66 LHPRSASNRPIARLSTALDQCATQEAATYRAFAGQCGVADMIEFFFRRNDRIVAGMSVLW 125 L P + I + CA + Y F V DMIE F RR RI+AG+S++ Sbjct: 88 LSPSRFGQQVITVATMTPGICA-RHRHYYHEFMLPNHVCDMIEIFIRRGHRIIAGISLMR 146 Query: 126 APGCAIPDGSMHI--AEKIHDYLEFNLTSRLSSNADEPARFGLTSREMEVVELLCCGRTN 183 IP S A+ + L ++ L + D + LT++E E+V ++C G +N Sbjct: 147 D----IPFSSEERLRAQAVQPLLGLSIHDSLQEDNDLAS--ILTAKEREIVGMVCEGASN 200 Query: 184 REIGECLNIGLATVKTHLIHIFEKLGVETRSAVVA 218 + I LNI L+TVKTHL +IF K V R+ +V+ Sbjct: 201 KLIARQLNISLSTVKTHLRNIFAKTEVINRTELVS 235 >gb|AAT49800.1| PA4074 [synthetic construct] Length = 223 Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 99/202 (49%), Gaps = 4/202 (1%) Query: 22 ILEGSATAFYEVDGNLTLNRFVLSSNVPPSFHDQYLAGMNRLDPLHPRS--ASNRPIARL 79 ++ S FY +D + + F L +P H YL DPL PR AS P+ L Sbjct: 20 VVPASLCVFYRIDEDCRAHDFQLL-RMPAGMHRDYLRHYRDYDPLQPRHCLASASPVVPL 78 Query: 80 STALDQCATQEAATYRAFAGQCGVADMIEFFFRRNDRIVAGMSVLW-APGCAIPDGSMHI 138 + + +++A Y+ F + G+ D++E + R VA +S+L A A D + Sbjct: 79 RQGIARQPAEDSALYQGFLRRHGICDVVEVLAHAHQRPVAALSLLRDARLGAFSDQELRQ 138 Query: 139 AEKIHDYLEFNLTSRLSSNADEPARFGLTSREMEVVELLCCGRTNREIGECLNIGLATVK 198 +H +E + + A GLT RE E+ LL G +N+ + +CL +GL TVK Sbjct: 139 LRALHGLMELAAQACATPTASAERLQGLTPREREIALLLRDGVSNKCLAQCLGLGLPTVK 198 Query: 199 THLIHIFEKLGVETRSAVVAMM 220 THL+++F K G +R+ +V + Sbjct: 199 THLLNLFRKTGARSRTELVKRL 220