BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0112.p (357 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_571408.1| inner-membrane translocator [Rhodopseudomonas p... 601 e-170 ref|YP_001239222.1| branched chain amino acid ABC transporter pe... 410 e-112 ref|YP_001206789.1| branched chain amino acid ABC transporter pe... 405 e-111 ref|YP_532882.1| inner-membrane translocator [Rhodopseudomonas p... 384 e-104 ref|NP_947755.1| ABC transporter permease [Rhodopseudomonas palu... 382 e-104 >ref|YP_571408.1| inner-membrane translocator [Rhodopseudomonas palustris BisB5] gb|ABE41507.1| inner-membrane translocator [Rhodopseudomonas palustris BisB5] Length = 357 Score = 601 bits (1549), Expect = e-170, Method: Compositional matrix adjust. Identities = 304/355 (85%), Positives = 323/355 (90%) Query: 1 MLKLLEGPQTLGRGKIFWSCFLAVLAGALIYPLFADSYDVGNFAYFLIWIFMALGLCLMW 60 M+KLLEGPQTLGRG +FWSCFL VLAGALIYP+FADSYDVGNF+YFLIWIFMALGLCL+W Sbjct: 1 MIKLLEGPQTLGRGPLFWSCFLVVLAGALIYPVFADSYDVGNFSYFLIWIFMALGLCLIW 60 Query: 61 GYGGMLSFGQTFFFGIAGYGYGVLAINMGGGTATIAALVLSVVTAMIAAGILGYFMIWGG 120 GYGGMLSFGQT FFG+AGY YGVLAINMGGGT TI ALV+SVV AMIAAGILGYFMIWGG Sbjct: 61 GYGGMLSFGQTLFFGVAGYAYGVLAINMGGGTTTIVALVVSVVIAMIAAGILGYFMIWGG 120 Query: 121 ISGIFFGIVTLSATLVLAFFLGQTAGPEWHIGPARLNGFNGMKGMDPLTVADFDIEGSAL 180 I+GIFFGIVTLSATLVLAFFLGQTAGPEW IG ARLNGFNGMKGMDPL + IEGSAL Sbjct: 121 INGIFFGIVTLSATLVLAFFLGQTAGPEWRIGDARLNGFNGMKGMDPLAIGSVYIEGSAL 180 Query: 181 YYVMIALIVIVYISLRMLVNSSVGNVIVATRENPQRAEMLGYDVRKYQLLTFVIGSGLAG 240 YY+M+ LIV+VY++LRMLVNS VGNVIVATRENPQRAEMLGYDVRKYQLLTFVIGSGLAG Sbjct: 181 YYLMVGLIVVVYLALRMLVNSGVGNVIVATRENPQRAEMLGYDVRKYQLLTFVIGSGLAG 240 Query: 241 LSGALYTSWGQFITPSSIGLPAAAMPIVWVAFSGRNDLTATLVGSFLLLFGFQTITVYSQ 300 LSGALYTSWGQFITPSSIGLPAAAMPIVWVAFSGRNDLTATLVGSFLLLFGFQTITVYSQ Sbjct: 241 LSGALYTSWGQFITPSSIGLPAAAMPIVWVAFSGRNDLTATLVGSFLLLFGFQTITVYSQ 300 Query: 301 QAALVLMGVLLLATVMLAPQGFVLGIGKLVVDWWTRRRRRDEAPALADTARLQSD 355 QAALVLMG LLLATVM APQGFVLGIGK + D RR + AL D ++L+ D Sbjct: 301 QAALVLMGALLLATVMAAPQGFVLGIGKFIADRTARRGKPGVKSALPDQSQLKPD 355 >ref|YP_001239222.1| branched chain amino acid ABC transporter permease [Bradyrhizobium sp. BTAi1] gb|ABQ35316.1| amino acid/amide ABC transporter membrane protein 2, HAAT family [Bradyrhizobium sp. BTAi1] Length = 354 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 211/350 (60%), Positives = 266/350 (76%), Gaps = 12/350 (3%) Query: 1 MLKLLEGPQTLGRGKIFWSCFLAVLAGALIYPLFADSYDVGNFAYFLIWIFMALGLCLMW 60 + + LEGPQTLGRG FW+ F VLAGAL YPLF+D Y VGN YF +W+F+AL L L+W Sbjct: 7 LFRRLEGPQTLGRGPAFWALFALVLAGALAYPLFSDGYTVGNTVYFFVWVFIALSLSLIW 66 Query: 61 GYGGMLSFGQTFFFGIAGYGYGVLAINMGGGTA-TIAALVLSVVTAMIAAGILGYFMIWG 119 GYGG LSFGQT FFGIAGYGYG+L IN G T AL+L++ A + A +LGYFM +G Sbjct: 67 GYGGSLSFGQTAFFGIAGYGYGILTINFGASYGFTWIALLLAIGMAALVAALLGYFMFFG 126 Query: 120 GISGIFFGIVTLSATLVLAFFLGQTAGPEWHIGPARLNGFNGMKGMDPLTVADFD----- 174 I G+F GIVTL+ TL+L F+ QTAGPEW IG ARLNGFNGM M PLT+ F Sbjct: 127 RIGGVFLGIVTLAVTLMLERFMAQTAGPEWRIGAARLNGFNGMSAMPPLTIPWFGGPIVL 186 Query: 175 IEGSALYYVMIALIVIVYISLRMLVNSSVGNVIVATRENPQRAEMLGYDVRKYQLLTFVI 234 LYYV++A++V+VY++LR+L+NSS GNVIVA RENP+RAEMLGYD+RKYQL+TFVI Sbjct: 187 FADVGLYYVVLAMLVLVYLALRILMNSSFGNVIVAIRENPERAEMLGYDIRKYQLITFVI 246 Query: 235 GSGLAGLSGALYTSWGQFITPSSIGLPAAAMPIVWVAFSGRNDLTATLVGSFLLLFGFQT 294 G+ LAGLSG LYT WGQ+ITPSS+G+ AA++P++WVA GR+DLTAT++G+ ++L GFQ Sbjct: 247 GAALAGLSGVLYTVWGQYITPSSMGMTAASLPLIWVAVGGRSDLTATIIGTLVVLSGFQA 306 Query: 295 ITVYSQQAALVLMGVLLLATVMLAPQGFVLGIGKLVVDWWTRR--RRRDE 342 +T+Y Q ALV MGVLL+ TV++AP G VLG+ + W T+R RR+ E Sbjct: 307 LTIYGSQYALVFMGVLLVLTVLIAPNGLVLGL----ITWVTKRVARRKQE 352 >ref|YP_001206789.1| branched chain amino acid ABC transporter permease [Bradyrhizobium sp. ORS 278] emb|CAL78572.1| Putative branched-chain amino acid ABC transporter (permease protein) [Bradyrhizobium sp. ORS 278] Length = 356 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 207/346 (59%), Positives = 260/346 (75%), Gaps = 6/346 (1%) Query: 1 MLKLLEGPQTLGRGKIFWSCFLAVLAGALIYPLFADSYDVGNFAYFLIWIFMALGLCLMW 60 + + LEGPQTLGRG FW+ F VL GAL YPLF+D Y VGN YF +W+F+AL L L+W Sbjct: 9 LFRRLEGPQTLGRGPAFWALFALVLGGALAYPLFSDGYTVGNTVYFFVWVFIALSLSLIW 68 Query: 61 GYGGMLSFGQTFFFGIAGYGYGVLAINMGGGTA-TIAALVLSVVTAMIAAGILGYFMIWG 119 GYGG LSFGQT FFGIAGYGYG+L IN G T AL+L++ A + A +LGYFM +G Sbjct: 69 GYGGSLSFGQTAFFGIAGYGYGILTINFGASYGFTWIALLLAIGMAALVAALLGYFMFFG 128 Query: 120 GISGIFFGIVTLSATLVLAFFLGQTAGPEWHIGPARLNGFNGMKGMDPLTVADFD----- 174 I G+F GIVTL+ TL+L F+ QTAGPEW IG ARLNGFNGM M PLT+ F Sbjct: 129 RIGGVFLGIVTLAVTLMLERFMAQTAGPEWRIGAARLNGFNGMSAMPPLTIPWFGGPIVL 188 Query: 175 IEGSALYYVMIALIVIVYISLRMLVNSSVGNVIVATRENPQRAEMLGYDVRKYQLLTFVI 234 LYYV++ ++V+VY+ LR+L+NSS GNVIVA RENP+RAEMLGYD+RKYQL+TFVI Sbjct: 189 FADVGLYYVVLGILVLVYLGLRILMNSSFGNVIVAIRENPERAEMLGYDIRKYQLITFVI 248 Query: 235 GSGLAGLSGALYTSWGQFITPSSIGLPAAAMPIVWVAFSGRNDLTATLVGSFLLLFGFQT 294 G+ LAGLSG LYT WGQ+ITPSS+G+ AA++P++WVA GR+DLTAT++G+ ++L GFQ Sbjct: 249 GAALAGLSGVLYTVWGQYITPSSMGMTAASLPLIWVAVGGRSDLTATVIGTLVVLSGFQA 308 Query: 295 ITVYSQQAALVLMGVLLLATVMLAPQGFVLGIGKLVVDWWTRRRRR 340 +T+Y Q ALV MGVLL+ TV++AP G VLG+ K + TRR+ Sbjct: 309 LTIYGSQYALVFMGVLLVLTVLIAPNGLVLGVIKGITRLLTRRKSE 354 >ref|YP_532882.1| inner-membrane translocator [Rhodopseudomonas palustris BisB18] gb|ABD88563.1| inner-membrane translocator [Rhodopseudomonas palustris BisB18] Length = 350 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 203/348 (58%), Positives = 259/348 (74%), Gaps = 6/348 (1%) Query: 1 MLKLLEGPQTLGRGKIFWSCFLAVLAGALIYPLFADSYDVGNFAYFLIWIFMALGLCLMW 60 + + LEGPQT+GRG FWS F VL AL YPL +D Y VGN YF +W+F+AL LCL+W Sbjct: 3 LFRRLEGPQTVGRGPAFWSLFGVVLLSALAYPLISDGYTVGNTVYFFVWVFIALSLCLIW 62 Query: 61 GYGGMLSFGQTFFFGIAGYGYGVLAINMGGGTA-TIAALVLSVVTAMIAAGILGYFMIWG 119 GYGG LSFGQT FFGIAGY YG+L IN G T+ A++L++ A + A +LGYFM +G Sbjct: 63 GYGGALSFGQTAFFGIAGYSYGILTINFGSAYGLTLVAMLLAIGVAALVAVLLGYFMFFG 122 Query: 120 GISGIFFGIVTLSATLVLAFFLGQTAGPEWHIGPARLNGFNGMKGMDPLTVADFD----- 174 I G+F GIVTL+ TL+L F+ QTAGPEW IG ARLNGFNGM GM PLT+ FD Sbjct: 123 RIEGVFLGIVTLAVTLMLERFMAQTAGPEWRIGSARLNGFNGMSGMPPLTIPWFDGPIVL 182 Query: 175 IEGSALYYVMIALIVIVYISLRMLVNSSVGNVIVATRENPQRAEMLGYDVRKYQLLTFVI 234 LYY ++ L+++VY+ LR+LVNSS GNVIVA RENPQRAEMLGYD+RK+QL+ FVI Sbjct: 183 FADVGLYYFVLGLVIVVYLGLRILVNSSFGNVIVAIRENPQRAEMLGYDIRKFQLINFVI 242 Query: 235 GSGLAGLSGALYTSWGQFITPSSIGLPAAAMPIVWVAFSGRNDLTATLVGSFLLLFGFQT 294 G+ LAG+SG LYT+WGQ+ITPSS+G+ +AA+P++WVA GR+DLT+T++G+ L+L GFQ Sbjct: 243 GAALAGMSGVLYTAWGQYITPSSMGMTSAALPLIWVAVGGRSDLTSTVIGTLLVLAGFQA 302 Query: 295 ITVYSQQAALVLMGVLLLATVMLAPQGFVLGIGKLVVDWWTRRRRRDE 342 +T+Y Q ALV+MGVLLL TV++AP G VLG + +R +R Sbjct: 303 LTIYGSQYALVVMGVLLLLTVLIAPNGLVLGAMNWIAGLVSRSKRERN 350 >ref|NP_947755.1| ABC transporter permease [Rhodopseudomonas palustris CGA009] ref|YP_001991650.1| inner-membrane translocator [Rhodopseudomonas palustris TIE-1] emb|CAE27853.1| possible permease of ABC transporter [Rhodopseudomonas palustris CGA009] gb|ACF01175.1| inner-membrane translocator [Rhodopseudomonas palustris TIE-1] Length = 354 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 209/340 (61%), Positives = 265/340 (77%), Gaps = 10/340 (2%) Query: 1 MLKLLEGPQTLGRGKIFWSCFLAVLAGALIYPLFADSYDVGNFAYFLIWIFMALGLCLMW 60 + + LEGPQT GRGK+FWS F+ L GAL YP+F+D Y VGN AYF +W+F+AL LCL+W Sbjct: 7 LFRRLEGPQTKGRGKLFWSVFVLALVGALAYPMFSDGYTVGNTAYFFVWVFIALSLCLIW 66 Query: 61 GYGGMLSFGQTFFFGIAGYGYGVLAINMGGGTA-TIAALVLSVVTAMIAAGILGYFMIWG 119 GYGG LSFGQT FFGIAGY YG+L +N G T+ AL+ +V A + A +LGYFM +G Sbjct: 67 GYGGALSFGQTAFFGIAGYSYGILTLNFGAAYGFTLVALLAAVAIAAVVALLLGYFMFFG 126 Query: 120 GISGIFFGIVTLSATLVLAFFLGQTAGPEWHIGPARLNGFNGMKGMDPLTVADFD----- 174 I G+F GIVTL+ TL+L F+ QTAGPEW IG ARLNGFNGM GM P+T+ FD Sbjct: 127 RIEGVFLGIVTLAVTLMLERFMAQTAGPEWRIGAARLNGFNGMSGMPPITIPWFDGPIVL 186 Query: 175 IEGSALYYVMIALIVIVYISLRMLVNSSVGNVIVATRENPQRAEMLGYDVRKYQLLTFVI 234 LYY+++AL+V+VY+ LR+LVNSS GNVIVA RENP+RAEMLGYD+RKYQL+ FVI Sbjct: 187 FADVGLYYLILALVVVVYLGLRILVNSSFGNVIVAIRENPERAEMLGYDIRKYQLINFVI 246 Query: 235 GSGLAGLSGALYTSWGQFITPSSIGLPAAAMPIVWVAFSGRNDLTATLVGSFLLLFGFQT 294 G+GLAGLSG LYT+WGQ+ITPSS+G+ +AA+P++WVA GR+DLT+TLVG+ ++L GFQ Sbjct: 247 GAGLAGLSGVLYTAWGQYITPSSMGMTSAALPLIWVAVGGRSDLTSTLVGTLVVLAGFQA 306 Query: 295 ITVYSQQAALVLMGVLLLATVMLAPQGFVLG----IGKLV 330 +T+Y Q ALV+MG+LL+ TV++AP G VLG IG+LV Sbjct: 307 LTIYGSQYALVVMGLLLVLTVLIAPNGLVLGAMNVIGRLV 346