BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0106.p (371 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_571413.1| putative aliphatic amidase expression-regulatin... 638 0.0 ref|YP_001755985.1| putative aliphatic amidase expression-regula... 308 1e-81 ref|YP_003930706.1| ABC transport system, periplasmic solute-bin... 299 4e-79 ref|YP_003695123.1| aliphatic amidase expression-regulating prot... 295 1e-77 ref|NP_947751.1| putative aliphatic amidase expression-regulatin... 292 5e-77 >ref|YP_571413.1| putative aliphatic amidase expression-regulating protein, AmiC [Rhodopseudomonas palustris BisB5] gb|ABE41512.1| putative aliphatic amidase expression-regulating protein, AmiC [Rhodopseudomonas palustris BisB5] Length = 388 Score = 638 bits (1645), Expect = 0.0, Method: Compositional matrix adjust. Identities = 308/388 (79%), Positives = 342/388 (88%), Gaps = 17/388 (4%) Query: 1 MTKPSIPVGIICSQHGPYQAMGREILKSAMMAVDEINNQDEFDFAISAHVRDPRGIISEY 60 MTKPSIPVGI+ S+ GPYQAMGREILK A+MA+D++N+ +F F + HVRDP G+IS Y Sbjct: 1 MTKPSIPVGILTSKSGPYQAMGREILKCALMAIDDVNDCPDFGFRFTPHVRDPGGVISAY 60 Query: 61 HTVCDDLIRNVG----------------LPIVERTDRLLWYPARYEGFECSDNVIYVGAS 104 HT CDDLIRNV LPIVERT+RLLWYPARYEGFECSDNVIYVGAS Sbjct: 61 HTACDDLIRNVRVEHIIGCYTSASRKQVLPIVERTERLLWYPARYEGFECSDNVIYVGAS 120 Query: 105 PNHNVLPLVRYVLDNLSREIFCVGSNYVWTWETNRVTRELVTAAKGRILAERLLELGESA 164 PNHNV+PL+RYVLDNLSR+ FCVGSNYVWTWETNRVTRELVTAA+G I+AERLLELGES Sbjct: 121 PNHNVVPLIRYVLDNLSRDFFCVGSNYVWTWETNRVTRELVTAAEGHIVAERLLELGESR 180 Query: 165 VTHIVDEIVRRRPPVVFNTLVGSSSYDFIRAFHAATAAAGLDIPMLSCSLCEPELKIAGP 224 V HIV+EIVRR+PP+VFNTLVGSSSYDFIRAF +ATAAAGL+IPMLSCSLCEPEL+I GP Sbjct: 181 VDHIVEEIVRRQPPIVFNTLVGSSSYDFIRAFQSATAAAGLNIPMLSCSLCEPELRIVGP 240 Query: 225 ASAGCITSSAYFESIRLPENRAFVARWKARYGEHSSPSVDGQSAYVAVYLLAGALQRAGT 284 A+AGCITSSAYFESIRLPENRAFVARWKARYG+ SSPSVDGQSAYVA +LLA A+QRAGT Sbjct: 241 AAAGCITSSAYFESIRLPENRAFVARWKARYGKDSSPSVDGQSAYVATFLLARAMQRAGT 300 Query: 285 SNIGEVRRAAAGHRYNSPQGPVWIDGSNNHCVLTPRLAVSNAEGQFDIFWEAEAPVRPDP 344 SN+ EVRRAAAG+RY+SPQGPVWIDG NNHCVLTPRLAVSNA GQFDIFWEAEAPV+PDP Sbjct: 301 SNVNEVRRAAAGYRYDSPQGPVWIDGDNNHCVLTPRLAVSNARGQFDIFWEAEAPVKPDP 360 Query: 345 YLTQLDIAASPARDGTLPNA-PHLRVVK 371 YL+QLD+A P+RD LPNA PHLR+VK Sbjct: 361 YLSQLDVAVRPSRDIRLPNASPHLRIVK 388 >ref|YP_001755985.1| putative aliphatic amidase expression-regulating protein, AmiC [Methylobacterium radiotolerans JCM 2831] gb|ACB25302.1| putative aliphatic amidase expression-regulating protein, AmiC [Methylobacterium radiotolerans JCM 2831] Length = 402 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 162/363 (44%), Positives = 223/363 (61%), Gaps = 22/363 (6%) Query: 8 VGIICSQHGPYQAMGREILKSAMMAVDEINNQDEFDFAISAHVRDPRGIISEYHTVCDDL 67 VGI+ S GPY +GR +L A++AV E+N + D + + DP+G ++ Y + L Sbjct: 26 VGILFSADGPYGLVGRAMLNGALLAVAEVNTRG--DCVLEPVICDPQGALAGYVAGAERL 83 Query: 68 I---------------RNVGLPIVERTDRLLWYPARYEGFECSDNVIYVGASPNHNVLPL 112 + R +PI E+ D LLWYP+ YEGFE S NV+Y GA+PN +++PL Sbjct: 84 LGGGIRHVVGCYTSSSRKEIIPIFEKRDALLWYPSHYEGFETSANVVYTGAAPNQHIVPL 143 Query: 113 VRYVLDNLSREIFCVGSNYVWTWETNRVTRELVTAAKGRILAERLLELGESAVTHIVDEI 172 VR++L R FCVGSNY+W WE NR+ RE + A G + ER L +GE+A ++ I Sbjct: 144 VRHLLARGGRTAFCVGSNYIWAWENNRILRETLAIAGGAVAGERYLAVGETAFDQVIAAI 203 Query: 173 VRRRPPVVFNTLVGSSSYDFIRAFHAATAAAGLD----IPMLSCSLCEPELKIAGP-ASA 227 + RP VFNTL+G S+Y F R F +A AA G+D IP+ SCSL EPEL+ GP A Sbjct: 204 LAARPDFVFNTLIGISAYRFFRDFRSACAAHGIDQARTIPVASCSLAEPELEAIGPEAVD 263 Query: 228 GCITSSAYFESIRLPENRAFVARWKARYGEHSSPSVDGQSAYVAVYLLAGALQRAGTSNI 287 G ++SS YF SI NRAF+A + R+ + +PS D +++Y+AV+LLA AL RAGT + Sbjct: 264 GHLSSSVYFTSIDTSRNRAFLAAYATRFPDGPTPSADAEASYIAVHLLARALVRAGTEDA 323 Query: 288 GEVRRAAAGHRYNSPQGPVWIDGSNNHCVLTPRLAVSNAEGQFDIFWEAEAPVRPDPYLT 347 VRRAA +++PQGPV +D + H LTPR+ +S A +F I EA PV PDPYL Sbjct: 324 ASVRRAACAEGFDAPQGPVCLDETTLHACLTPRIGLSTAAARFTIVAEAAEPVAPDPYLV 383 Query: 348 QLD 350 + D Sbjct: 384 RSD 386 >ref|YP_003930706.1| ABC transport system, periplasmic solute-binding protein precursor [Pantoea vagans C9-1] gb|ADO09257.1| Putative ABC transport system, periplasmic solute-binding protein precursor [Pantoea vagans C9-1] Length = 385 Score = 299 bits (766), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 154/378 (40%), Positives = 234/378 (61%), Gaps = 20/378 (5%) Query: 1 MTKPSIPVGIICSQHGPYQAMGREILKSAMMAVDEINNQDEFDFAISAHVRDPRGIISEY 60 + K IPVGI+ S G Y +GRE+L ++A++EIN F ++ +RDP+G + Y Sbjct: 7 LPKRVIPVGILYSVSGDYAVIGREMLNGILLAIEEINANPAHPFTLAPVIRDPQGSLDLY 66 Query: 61 HTVCDDLI----------------RNVGLPIVERTDRLLWYPARYEGFECSDNVIYVGAS 104 + C DL+ R LP++E + LLW+ ARYEGFE S++VIY+GA+ Sbjct: 67 YEYCHDLLYRHGVRHVIGCYTSAARKTILPLIEGANALLWHSARYEGFESSNSVIYLGAT 126 Query: 105 PNHNVLPLVRYVLDNLSREIFCVGSNYVWTWETNRVTRELVTAAKGRILAERLLELGESA 164 PN ++LP++ ++L + EI+ +GSNYVW+WE +R+TRE + A G +L +LL +GE Sbjct: 127 PNQHILPMLSWLLQQQAAEIYHIGSNYVWSWEMDRITREAMIPAGGSVLQSKLLPMGEEN 186 Query: 165 VTHIVDEIVRRRPPVVFNTLVGSSSYDFIRAFHAATAAAGL--DIPMLSCSLCEPELKIA 222 V I+ +I+ RP V+ NTLVG S+Y F RA+H A ++ LS +LCEPE+++ Sbjct: 187 VETIIADIIACRPKVLLNTLVGKSAYSFYRAWHQACQQQPWLNEVLKLSLTLCEPEVQLI 246 Query: 223 GP-ASAGCITSSAYFESIRLPENRAFVARWKARYGEHSSPSVDGQSAYVAVYLLAGALQR 281 G A G + S+++F+SI NR F++ + R+GEH SPSVD +SA++A +LLA A+ R Sbjct: 247 GAEALEGYLVSASWFQSIDNTANRRFLSSYHQRFGEHVSPSVDSESAWLAGHLLARAIAR 306 Query: 282 AGTSNIGEVRRAAAGHRYNSPQGPVWIDGSNNHCVLTPRLAVSNAEGQFDIFWEAEAPVR 341 G ++ VR A +SP G + ++ NNHC LTP LA + G+ + FW+A+APV Sbjct: 307 HGNDDVEGVRDAVLLDEMDSPAGRIRLNAGNNHCWLTPHLARCH-NGRLESFWQADAPVE 365 Query: 342 PDPYLTQLDIAASPARDG 359 PDP+L +D+A+ G Sbjct: 366 PDPWLAWVDLASLTPHGG 383 >ref|YP_003695123.1| aliphatic amidase expression-regulating protein, AmiC [Starkeya novella DSM 506] gb|ADH90504.1| putative aliphatic amidase expression-regulating protein, AmiC [Starkeya novella DSM 506] Length = 382 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 159/384 (41%), Positives = 226/384 (58%), Gaps = 28/384 (7%) Query: 8 VGIICSQHGPYQAMGREILKSAMMAVDEINNQDEFDFAISAHVRDPRGIISEYHTVCDDL 67 +G++ S GPY + R +L A++AV E ++ + DP G + Y + DL Sbjct: 7 IGVMFSTTGPYSVVARSMLNGALLAVAEATPPH---VSVEPVIVDPAGDLGAYAGLARDL 63 Query: 68 IRN-----VG----------LPIVERTDRLLWYPARYEGFECSDNVIYVGASPNHNVLPL 112 +++ VG +P E+ D LLWYP+ YEGFE S+NVIY GASPN +VLPL Sbjct: 64 LQSGVRHVVGCYTSSSRKEVIPFFEKHDALLWYPSHYEGFESSNNVIYTGASPNQHVLPL 123 Query: 113 VRYVLDNLSREIFCVGSNYVWTWETNRVTRELVTAAKGRILAERLLELGESAVTHIVDEI 172 V ++L + FCVGSNY+W WE R+ RE + A GR+LAER + +G++ + +V+ I Sbjct: 124 VEHMLGRVGASAFCVGSNYIWAWENTRIFREAMMAQDGRVLAERYVPVGDTEIDQVVEAI 183 Query: 173 VRRRPPVVFNTLVGSSSYDFIRAFHAATAAAGLD----IPMLSCSLCEPELKIAGPASA- 227 + RP VFNTL+G+S+Y F RAF AA A G+D IP++SCSL EPEL+ G + Sbjct: 184 LDARPDFVFNTLIGTSAYAFFRAFRAACNARGIDQPKHIPVVSCSLSEPELEEIGEGAVD 243 Query: 228 GCITSSAYFESIRLPENRAFVARWKARYGEHSSPSVDGQSAYVAVYLLAGALQRAGTSNI 287 G ++SS YF S+ P NRAF ++ + + S S D +++YVA+ LL +L AGT ++ Sbjct: 244 GHLSSSVYFSSLDTPANRAFTELYRTTFPQGPSTSADAEASYVAMKLLILSLAEAGTDDV 303 Query: 288 GEVRRAAAGHRYNSPQGPVWIDGSNNHCVLTPRLAVSNAEGQFDIFWEAEAPVRPDPYLT 347 V++A +PQG V +D H LTPR+ +SN + +FD+ +EA PVRPDPYL Sbjct: 304 EVVKQAVTRQHLLAPQGEVRVDPQTLHAYLTPRIGLSNRQSRFDLLFEAPGPVRPDPYLV 363 Query: 348 QLDIAASPARDGTLPNAPHLRVVK 371 Q S R P LRVVK Sbjct: 364 Q-----SAPRYAVASRNPALRVVK 382 >ref|NP_947751.1| putative aliphatic amidase expression-regulating protein AmiC [Rhodopseudomonas palustris CGA009] emb|CAE27849.1| putative aliphatic amidase expression-regulating protein, AmiC [Rhodopseudomonas palustris CGA009] Length = 385 Score = 292 bits (748), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 166/391 (42%), Positives = 223/391 (57%), Gaps = 27/391 (6%) Query: 1 MTKPSIPVGIICSQHGPYQAMGREILKSAMMAVDEINNQDEFDFAISAHVRDPRGIISEY 60 MTK + +G++ S G Y A+GR +L M+ + E+ I + +P G +S+Y Sbjct: 1 MTK-RLRIGVMFSTTGSYGAVGRTMLNGVMLGLSEVAASGSGP-EIEPVIVNPGGDLSQY 58 Query: 61 HTVCDDLI---------------RNVGLPIVERTDRLLWYPARYEGFECSDNVIYVGASP 105 + DL+ R +P E+ D LLWYP+ YEGFE SDNVIY GASP Sbjct: 59 RALAHDLLASGVRQVVGCYTSSSRKEVIPCFEKHDGLLWYPSHYEGFESSDNVIYTGASP 118 Query: 106 NHNVLPLVRYVLDNLSREIFCVGSNYVWTWETNRVTRELVTAAKGRILAERLLELGESAV 165 N +VLPLV Y+ + FC+GSNY+W WE NR+ RE + A G +LAER L +G++ V Sbjct: 119 NQHVLPLVDYLAAKHGKRAFCIGSNYIWAWENNRIFREALIARGGTVLAERYLPVGDTDV 178 Query: 166 THIVDEIVRRRPPVVFNTLVGSSSYDFIRAFHAATAAAGLD----IPMLSCSLCEPEL-K 220 ++ I+ +RP VFN L+G+S+Y F RAF AA + G+D IP+ SC+L EPEL + Sbjct: 179 DRVIAAILEQRPDFVFNNLIGTSAYAFFRAFRAACLSRGIDQAAEIPVASCTLAEPELAE 238 Query: 221 IAGPASAGCITSSAYFESIRLPENRAFVARWKARYGEHSSPSVDGQSAYVAVYLLAGALQ 280 I A G ++SS YF S+ N AF + +Y + S D ++ Y+AV LLA ALQ Sbjct: 239 IGAEAVDGHLSSSVYFASLAGAANDAFTHAYATKYPDAPPTSADAEACYIAVKLLAAALQ 298 Query: 281 RAGTSNIGEVRRAAAGHRYNSPQGPVWIDGSNNHCVLTPRLAVSNAEGQFDIFWEAEAPV 340 +AGT G VR A A R +PQG V ID H LTPR+ S A GQFD+ EA P+ Sbjct: 299 QAGTDYAGAVRAAVADQRLIAPQGEVRIDPQTYHAWLTPRIGRSTAAGQFDVLLEAPEPI 358 Query: 341 RPDPYLTQLDIAASPARDGTLPNAPHLRVVK 371 PDPYL Q SP R +P LR+VK Sbjct: 359 APDPYLVQ----TSP-RFAAAMRSPLLRLVK 384