BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0086.p (295 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772885.1| transcriptional regulator [Bradyrhizobium japon... 420 e-115 ref|YP_001242270.1| GntR family transcriptional regulator [Brady... 382 e-104 ref|YP_001203717.1| histidine utilization repressor [Bradyrhizob... 370 e-100 ref|YP_002130327.1| histidine utilization repressor [Phenylobact... 267 2e-69 ref|YP_003695466.1| GntR family transcriptional regulator [Stark... 264 1e-68 >ref|NP_772885.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC51510.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 242 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 206/247 (83%), Positives = 224/247 (90%), Gaps = 5/247 (2%) Query: 49 MSLASDQAKPNAAGKPTLYKRIRLDIETRILTGEWPPGHRIPFEHQLMARYRCSRMTVNK 108 MSLA+D A +PTLYKRIR DIE RILTGEWPPGHRIPFEH+L+ARY CSRMTVNK Sbjct: 1 MSLATD-----GADQPTLYKRIRADIENRILTGEWPPGHRIPFEHELVARYGCSRMTVNK 55 Query: 109 ALSELAQADLIERRRRAGTFVRRPQHLSAVLKIADIRAEITALGRSYGYQLIDCRRRTAT 168 ALSELAQADLIERRRRAG+FVRRPQH SAVLKIADIRAEITALGR+YGY+LI + R AT Sbjct: 56 ALSELAQADLIERRRRAGSFVRRPQHQSAVLKIADIRAEITALGRAYGYELIHRKLRIAT 115 Query: 169 SADRARLGMDKTGKVVAIACRHSADNVPFAVEDRLIDLSTVPEAAHADFAREPPGSWLLH 228 +ADR RLG+ K GKVVAIACRHSADNVPFA EDRLIDLS+VP+AA ADF+REPPGSWLLH Sbjct: 116 AADRDRLGVKKAGKVVAIACRHSADNVPFAAEDRLIDLSSVPDAATADFSREPPGSWLLH 175 Query: 229 HVPWTEAEHTISAVVADDRTAEALDIAVGAPCLVIDRYTWRSARTVTAVRLHYPGETHRL 288 HVPWTEAEHTISA+VADDR A+ALDIAVGAPCLVIDRYTWRS RT+TAVRL YPG++HRL Sbjct: 176 HVPWTEAEHTISAIVADDRAAQALDIAVGAPCLVIDRYTWRSTRTITAVRLLYPGDSHRL 235 Query: 289 VARFKGG 295 VARFKGG Sbjct: 236 VARFKGG 242 >ref|YP_001242270.1| GntR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ38364.1| transcriptional regulator, GntR family [Bradyrhizobium sp. BTAi1] Length = 245 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 188/246 (76%), Positives = 207/246 (84%), Gaps = 3/246 (1%) Query: 49 MSLASDQAKPNAAGKPTLYKRIRLDIETRILTGEWPPGHRIPFEHQLMARYRCSRMTVNK 108 MSLA D+AKP A TLYK IR DIE RILTGEWPPGHRIPFEH++MARY CSRMTVNK Sbjct: 1 MSLAEDRAKPGAG---TLYKTIRQDIERRILTGEWPPGHRIPFEHEIMARYGCSRMTVNK 57 Query: 109 ALSELAQADLIERRRRAGTFVRRPQHLSAVLKIADIRAEITALGRSYGYQLIDCRRRTAT 168 ALSELAQADLIERRRRAG+FVRRPQ LSAVLKI DIRAEI ALGR+YGYQLI RR A Sbjct: 58 ALSELAQADLIERRRRAGSFVRRPQFLSAVLKIPDIRAEIGALGRTYGYQLISSMRRAAN 117 Query: 169 SADRARLGMDKTGKVVAIACRHSADNVPFAVEDRLIDLSTVPEAAHADFAREPPGSWLLH 228 + DR RLG+ K KV+AI CRHSADN+PFA+EDRLIDL VP+AA ADF +PPGSWLLH Sbjct: 118 AGDRERLGVKKPCKVIAIRCRHSADNLPFAIEDRLIDLDAVPDAAKADFKVDPPGSWLLH 177 Query: 229 HVPWTEAEHTISAVVADDRTAEALDIAVGAPCLVIDRYTWRSARTVTAVRLHYPGETHRL 288 HVPWTEAEH ISA+VAD+ A+ L IAVGAPCLVI+R+TWR R +TAVRL YPGE HRL Sbjct: 178 HVPWTEAEHAISAIVADEAIAQGLGIAVGAPCLVIERHTWRQGRPLTAVRLIYPGEQHRL 237 Query: 289 VARFKG 294 VARF+G Sbjct: 238 VARFRG 243 >ref|YP_001203717.1| histidine utilization repressor [Bradyrhizobium sp. ORS 278] emb|CAL75480.1| histidine utilization repressor, transcriptional regulatory protein GntR family [Bradyrhizobium sp. ORS 278] Length = 243 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 183/246 (74%), Positives = 204/246 (82%), Gaps = 5/246 (2%) Query: 49 MSLASDQAKPNAAGKPTLYKRIRLDIETRILTGEWPPGHRIPFEHQLMARYRCSRMTVNK 108 MSLA D+AKP+ TLYK IR DIE RILTGEWPPGHRIPFEH++M Y CSRMTVNK Sbjct: 1 MSLAEDRAKPS-----TLYKTIRQDIERRILTGEWPPGHRIPFEHEIMEHYGCSRMTVNK 55 Query: 109 ALSELAQADLIERRRRAGTFVRRPQHLSAVLKIADIRAEITALGRSYGYQLIDCRRRTAT 168 ALSELAQADLIERRRRAGTFVRRPQ LSAVLKI DIRAEI ALGR+YGY+LI RRTA Sbjct: 56 ALSELAQADLIERRRRAGTFVRRPQFLSAVLKIPDIRAEIGALGRAYGYELIASARRTAN 115 Query: 169 SADRARLGMDKTGKVVAIACRHSADNVPFAVEDRLIDLSTVPEAAHADFAREPPGSWLLH 228 +ADR RLG+ KV+AI CRHSAD +PFA+EDRLIDL VP+AA A+F +PPGSWLLH Sbjct: 116 AADRERLGVKTPCKVIAIRCRHSADGLPFAIEDRLIDLDAVPDAAKANFKIDPPGSWLLH 175 Query: 229 HVPWTEAEHTISAVVADDRTAEALDIAVGAPCLVIDRYTWRSARTVTAVRLHYPGETHRL 288 HVPWTEAEH ISA+VAD+ A +LDI GAPCLVI+R+TWR R +TAVRL YPGE HRL Sbjct: 176 HVPWTEAEHAISAIVADEAIATSLDIETGAPCLVIERHTWRQGRPLTAVRLVYPGEQHRL 235 Query: 289 VARFKG 294 VARF+G Sbjct: 236 VARFRG 241 >ref|YP_002130327.1| histidine utilization repressor [Phenylobacterium zucineum HLK1] gb|ACG77898.1| histidine utilization repressor [Phenylobacterium zucineum HLK1] Length = 244 Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 138/239 (57%), Positives = 167/239 (69%), Gaps = 2/239 (0%) Query: 59 NAAGKPTLYKRIRLDIETRILTGEWPPGHRIPFEHQLMARYRCSRMTVNKALSELAQADL 118 N+ TL+KRIR DI RIL+G WPPGHRIP+EH+LMA Y CSRMTVNKAL+ LA+A L Sbjct: 2 NSVADLTLHKRIRSDISERILSGAWPPGHRIPYEHELMAEYGCSRMTVNKALAPLAEAGL 61 Query: 119 IERRRRAGTFVRRPQHLSAVLKIADIRAEITALGRSYGYQLIDCRRRTATSADRARLGMD 178 IERRR+ GTFV RP+ SAVL I DI E+T G Y Y+L+ R RTAT + LG+D Sbjct: 62 IERRRKFGTFVARPKIHSAVLDIPDIPTEVTGRGEVYDYELLFQRVRTATLREMEELGLD 121 Query: 179 KTGKVVAIACRHSADNVPFAVEDRLIDLSTVPEAAHADFAREPPGSWLLHHVPWTEAEHT 238 ++ +V+ + H A PFA+E+RLI+L TVPEAA DF PGSWLL HVPWTEAEH Sbjct: 122 RSAQVLVLRSLHRAAGRPFALEERLINLETVPEAADVDFGATAPGSWLLSHVPWTEAEHR 181 Query: 239 ISAVVADDRTAEALDIAVGAPCLVIDRYTWRSARTVTAVRLHYPGETHRLVARF--KGG 295 ISA A AL I + A CLV++R TWRSA +T VRL +PGE + LVARF +GG Sbjct: 182 ISAANVPRAVATALGIELMAACLVLERRTWRSADRITHVRLTFPGEAYDLVARFAPQGG 240 >ref|YP_003695466.1| GntR family transcriptional regulator [Starkeya novella DSM 506] gb|ADH90847.1| transcriptional regulator, GntR family [Starkeya novella DSM 506] Length = 245 Score = 264 bits (674), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 135/246 (54%), Positives = 172/246 (69%), Gaps = 5/246 (2%) Query: 49 MSLASDQAKPNAAGKPTLYKRIRLDIETRILTGEWPPGHRIPFEHQLMARYRCSRMTVNK 108 M++ S +P A +L++RIR DIE RIL+GEWPPGHRIPFEH+LMA+Y C+RMTVNK Sbjct: 1 MTVQSQIVEPAA----SLHQRIRADIEARILSGEWPPGHRIPFEHELMAQYGCARMTVNK 56 Query: 109 ALSELAQADLIERRRRAGTFVRRPQHLSAVLKIADIRAEITALGRSYGYQLIDCRRRTAT 168 A++ L A L+ERRRRAG+FV +P+ SA+L I DI E+ A G +Y Y L+ RRR A Sbjct: 57 AIAGLVAAGLVERRRRAGSFVAQPRLHSAMLHIPDIPVEVAARGEAYSYVLLGRRRRLAN 116 Query: 169 SADRARL-GMDKTGKVVAIACRHSADNVPFAVEDRLIDLSTVPEAAHADFAREPPGSWLL 227 D +T +V+ ++C HSA+ P +E+RLI L++VPEAA ADFA PPGSWLL Sbjct: 117 EKDPVDFSAQSETREVLELSCLHSANGRPLGLEERLISLASVPEAAEADFAVTPPGSWLL 176 Query: 228 HHVPWTEAEHTISAVVADDRTAEALDIAVGAPCLVIDRYTWRSARTVTAVRLHYPGETHR 287 HHVPWTEAEH I AV A+ R AEAL + GA CL ++R TWR TVT VR + G+ + Sbjct: 177 HHVPWTEAEHRIRAVSANARAAEALHVPRGAACLSLERRTWRGGETVTYVRQLFRGDAYD 236 Query: 288 LVARFK 293 LVARF Sbjct: 237 LVARFS 242