BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0084.p         (237 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_772887.1| ABC transporter permease protein [Bradyrhizobiu...   442   e-122
ref|YP_001203715.1| ABC transporter permease [Bradyrhizobium sp....   387   e-106
ref|YP_001242272.1| ABC transporter permease [Bradyrhizobium sp....   380   e-103
ref|YP_002495673.1| binding-protein-dependent transport systems ...   370   e-101
ref|YP_001769170.1| binding-protein-dependent transport systems ...   367   e-100

>ref|NP_772887.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA
           110]
 dbj|BAC51512.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA
           110]
          Length = 257

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/237 (93%), Positives = 233/237 (98%)

Query: 1   VLFVALWSWATFGGHVSKTFLANPLTMVQEGYELLAKQGFLFDIGITIWRVIGGFVLAAV 60
           VLFVALWSWATFGGHVSKTFLANPLTMVQEG++LL KQGF+FDIG+TIWRV+GGF LAA+
Sbjct: 21  VLFVALWSWATFGGHVSKTFLANPLTMVQEGFDLLTKQGFMFDIGMTIWRVVGGFALAAI 80

Query: 61  IAVPLGVLMGAYKPIEAFLEPFVSFARYLPASAFIPLLILWAGIGELQKLLVIFIGAVFQ 120
           IAVP GVLMGAYKP+EAFLEPFVSFARYLPASAFIPLLILWAGIGELQKLLVIFIG+VFQ
Sbjct: 81  IAVPFGVLMGAYKPVEAFLEPFVSFARYLPASAFIPLLILWAGIGELQKLLVIFIGSVFQ 140

Query: 121 IILMVAVTVGATRRDLVEAAYTLGARDRGIIRRVLLPSAAPEIAEILRLVLGWAWTYVIV 180
           +ILMVAVTVGATRRDLVEAAYTLGA DRGIIRRVLLPS+APEIAEILRLVLGWAWTYVIV
Sbjct: 141 VILMVAVTVGATRRDLVEAAYTLGASDRGIIRRVLLPSSAPEIAEILRLVLGWAWTYVIV 200

Query: 181 AELIGSSSGIGHMITDSQALLNTGQIIFGIIVIGLIGLISDFLFKAFNAWLFPWKLA 237
           AELIGSSSGIGHMITDSQALLNTGQIIFGIIVIGLIGL+SDFLFKAFNAWLFPWKLA
Sbjct: 201 AELIGSSSGIGHMITDSQALLNTGQIIFGIIVIGLIGLVSDFLFKAFNAWLFPWKLA 257


>ref|YP_001203715.1| ABC transporter permease [Bradyrhizobium sp. ORS 278]
 emb|CAL75478.1| Putative ABC transporter (permease protein) [Bradyrhizobium sp. ORS
           278]
          Length = 258

 Score =  387 bits (993), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/237 (88%), Positives = 227/237 (95%)

Query: 1   VLFVALWSWATFGGHVSKTFLANPLTMVQEGYELLAKQGFLFDIGITIWRVIGGFVLAAV 60
           VLFV  WS ATFGG+VSKTFLA+PLTM++EG++LL K GFL+DIG+T+WRV+GGFVLAA 
Sbjct: 22  VLFVVAWSLATFGGYVSKTFLADPLTMLREGWDLLVKFGFLYDIGMTVWRVVGGFVLAAA 81

Query: 61  IAVPLGVLMGAYKPIEAFLEPFVSFARYLPASAFIPLLILWAGIGELQKLLVIFIGAVFQ 120
           IAVPLG+LMGAYKP+EAFLEPFVSFARYLPASAFIPLLILWAGIGELQKLL+IFIG+VFQ
Sbjct: 82  IAVPLGLLMGAYKPVEAFLEPFVSFARYLPASAFIPLLILWAGIGELQKLLIIFIGSVFQ 141

Query: 121 IILMVAVTVGATRRDLVEAAYTLGARDRGIIRRVLLPSAAPEIAEILRLVLGWAWTYVIV 180
           IILM+ VTVG TRRDLVEAAYTLGA DRGII RVLLPSAAP+IAE+LRLVLGWAWTYVIV
Sbjct: 142 IILMITVTVGNTRRDLVEAAYTLGASDRGIIARVLLPSAAPDIAEVLRLVLGWAWTYVIV 201

Query: 181 AELIGSSSGIGHMITDSQALLNTGQIIFGIIVIGLIGLISDFLFKAFNAWLFPWKLA 237
           AELIGSSSGIGHMITDSQALLNTGQIIFGII+IGLIGLISDFLFKAFNAWLFPWKLA
Sbjct: 202 AELIGSSSGIGHMITDSQALLNTGQIIFGIIIIGLIGLISDFLFKAFNAWLFPWKLA 258


>ref|YP_001242272.1| ABC transporter permease [Bradyrhizobium sp. BTAi1]
 gb|ABQ38366.1| Putative ABC transporter (permease protein) [Bradyrhizobium sp.
           BTAi1]
          Length = 258

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/237 (88%), Positives = 228/237 (96%)

Query: 1   VLFVALWSWATFGGHVSKTFLANPLTMVQEGYELLAKQGFLFDIGITIWRVIGGFVLAAV 60
           V+FVA WS ATFGG+V KTFLA+P+TM++EG++LL K GFL+DIG+T+WRV+GGFVLA+V
Sbjct: 22  VVFVAAWSLATFGGYVPKTFLADPVTMLREGWDLLVKFGFLYDIGMTVWRVVGGFVLASV 81

Query: 61  IAVPLGVLMGAYKPIEAFLEPFVSFARYLPASAFIPLLILWAGIGELQKLLVIFIGAVFQ 120
           IAVPLG+LMGAYKPIEAFLEPFVSFARYLPASAFIPLLILWAGIGELQKLL+IFIG+VFQ
Sbjct: 82  IAVPLGLLMGAYKPIEAFLEPFVSFARYLPASAFIPLLILWAGIGELQKLLIIFIGSVFQ 141

Query: 121 IILMVAVTVGATRRDLVEAAYTLGARDRGIIRRVLLPSAAPEIAEILRLVLGWAWTYVIV 180
           IILM+ VTVG TRRDLVEAAYTLGA DRGII RVLLPSAAP+IAEILRLVLGWAWTYVIV
Sbjct: 142 IILMITVTVGNTRRDLVEAAYTLGASDRGIIGRVLLPSAAPDIAEILRLVLGWAWTYVIV 201

Query: 181 AELIGSSSGIGHMITDSQALLNTGQIIFGIIVIGLIGLISDFLFKAFNAWLFPWKLA 237
           AELIGSSSGIGHMITDSQALLNTGQIIFGIIVIGLIGLISDFLFKAFNAWLFPWKLA
Sbjct: 202 AELIGSSSGIGHMITDSQALLNTGQIIFGIIVIGLIGLISDFLFKAFNAWLFPWKLA 258


>ref|YP_002495673.1| binding-protein-dependent transport systems inner membrane
           component [Methylobacterium nodulans ORS 2060]
 gb|ACL55370.1| binding-protein-dependent transport systems inner membrane
           component [Methylobacterium nodulans ORS 2060]
          Length = 257

 Score =  370 bits (951), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/237 (80%), Positives = 213/237 (89%)

Query: 1   VLFVALWSWATFGGHVSKTFLANPLTMVQEGYELLAKQGFLFDIGITIWRVIGGFVLAAV 60
           VLFV  W+ AT GG V  TFLA+PLTM+Q+G+ LL + GFL DIG+T+WRV+GGF+LAAV
Sbjct: 21  VLFVLAWAVATLGGFVPVTFLADPLTMLQDGWLLLTRFGFLSDIGVTVWRVVGGFLLAAV 80

Query: 61  IAVPLGVLMGAYKPIEAFLEPFVSFARYLPASAFIPLLILWAGIGELQKLLVIFIGAVFQ 120
           +AVPLG+LMGAYKP+EAF EPFVSFARYLPASAF+PLLILWAGIGE+QKLLVIFIG+VFQ
Sbjct: 81  VAVPLGILMGAYKPVEAFFEPFVSFARYLPASAFVPLLILWAGIGEMQKLLVIFIGSVFQ 140

Query: 121 IILMVAVTVGATRRDLVEAAYTLGARDRGIIRRVLLPSAAPEIAEILRLVLGWAWTYVIV 180
           I+LMVAV+VG  RRDLVEAAYTLGA D GIIRRVL+P+ AP+IAEILRLVLGWAWTYVIV
Sbjct: 141 IVLMVAVSVGQVRRDLVEAAYTLGASDTGIIRRVLIPATAPDIAEILRLVLGWAWTYVIV 200

Query: 181 AELIGSSSGIGHMITDSQALLNTGQIIFGIIVIGLIGLISDFLFKAFNAWLFPWKLA 237
           AELIGSSSGIGHMI +SQALL TGQIIFGIIVIGLIGL SDFLFKA N  +F WKLA
Sbjct: 201 AELIGSSSGIGHMIIESQALLATGQIIFGIIVIGLIGLASDFLFKAVNRQVFRWKLA 257


>ref|YP_001769170.1| binding-protein-dependent transport systems inner membrane
           component [Methylobacterium sp. 4-46]
 gb|ACA16736.1| binding-protein-dependent transport systems inner membrane
           component [Methylobacterium sp. 4-46]
          Length = 257

 Score =  367 bits (942), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/237 (79%), Positives = 211/237 (89%)

Query: 1   VLFVALWSWATFGGHVSKTFLANPLTMVQEGYELLAKQGFLFDIGITIWRVIGGFVLAAV 60
           V+FV  WS AT GG V  TFLA+P+ MV++G+ LL + GFL DIG+T+WRV+GGF+LA+ 
Sbjct: 21  VVFVGAWSLATLGGFVPATFLADPIAMVRDGWLLLTRFGFLSDIGMTVWRVLGGFLLASA 80

Query: 61  IAVPLGVLMGAYKPIEAFLEPFVSFARYLPASAFIPLLILWAGIGELQKLLVIFIGAVFQ 120
           +AVPLG+LMGAYKP+EAFLEPFVSFARYLPASAF+PLLILWAGIGE+QKLLVIFIG+VFQ
Sbjct: 81  VAVPLGILMGAYKPVEAFLEPFVSFARYLPASAFVPLLILWAGIGEMQKLLVIFIGSVFQ 140

Query: 121 IILMVAVTVGATRRDLVEAAYTLGARDRGIIRRVLLPSAAPEIAEILRLVLGWAWTYVIV 180
           I+LMVAV VGA RRDLVEAAYTLGA D GIIRRVL+P+ AP+IAE LRLVLGWAWTYVIV
Sbjct: 141 IVLMVAVAVGAVRRDLVEAAYTLGAGDSGIIRRVLIPATAPDIAETLRLVLGWAWTYVIV 200

Query: 181 AELIGSSSGIGHMITDSQALLNTGQIIFGIIVIGLIGLISDFLFKAFNAWLFPWKLA 237
           AELIGSSSGIGHMI +SQALL TGQIIFGIIVIGLIGL SDFLFKA N  LF WKLA
Sbjct: 201 AELIGSSSGIGHMIIESQALLATGQIIFGIIVIGLIGLASDFLFKALNRQLFRWKLA 257