BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0078.p (378 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001236830.1| branched chain amino acid ABC transporter pe... 613 e-173 ref|YP_783500.1| inner-membrane translocator [Rhodopseudomonas p... 611 e-173 ref|YP_001208701.1| branched chain amino acid ABC transporter pe... 608 e-172 ref|NP_767609.1| ABC transporter permease protein [Bradyrhizobiu... 599 e-169 ref|YP_004675353.1| putative ABC transporter permease [Hyphomicr... 577 e-162 >ref|YP_001236830.1| branched chain amino acid ABC transporter permease [Bradyrhizobium sp. BTAi1] gb|ABQ32924.1| amino acid/amide ABC transporter membrane protein 2, HAAT family [Bradyrhizobium sp. BTAi1] Length = 379 Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust. Identities = 341/379 (89%), Positives = 360/379 (94%), Gaps = 1/379 (0%) Query: 1 MIINSRFFNRSELLGFLALAVLLFLVLPLSLDIFRLNLVAKYLTYAFVGIGLVLCWGYGG 60 MIINSRFFNRSEL+GF++L +LL ++LPL+LD+FRLNLVAKYLTYAFV IGLVLCWGYGG Sbjct: 1 MIINSRFFNRSELIGFVSLLLLLVVILPLALDVFRLNLVAKYLTYAFVAIGLVLCWGYGG 60 Query: 61 ILSLGQGVFFGLGGYCMAMYLKLEASSVANTKIQSTPGIPDFMDWNQLTSLPFFWKPFHS 120 ILSLGQGVFFGLGGYCMAM+LKLEASSVANTKIQSTPGIPDFMDWNQLT LPFFWKPF S Sbjct: 61 ILSLGQGVFFGLGGYCMAMFLKLEASSVANTKIQSTPGIPDFMDWNQLTQLPFFWKPFQS 120 Query: 121 FPVALIAIILVPAIFSFIIGAAMFKRRVGGVYFAIITQAIAAIMTILIVGQQGYTGGING 180 FP AL AIILVPAIFSFIIGAAMFKRRVGGVYFAIITQAIAAIMTILIVGQQGYTGGING Sbjct: 121 FPFALAAIILVPAIFSFIIGAAMFKRRVGGVYFAIITQAIAAIMTILIVGQQGYTGGING 180 Query: 181 ITDLRTLHGWDIRTDHAKYILYFVEVVLLFGCICAAQFIRLTKLGRILVAMREQEDRVRF 240 ITDLRTLHGWDIRTDHAKYILYFVEV LF I AQFIRLTKLGRILVAMREQEDRVRF Sbjct: 181 ITDLRTLHGWDIRTDHAKYILYFVEVFFLFVAILVAQFIRLTKLGRILVAMREQEDRVRF 240 Query: 241 SGYSVANFKIFAFCAAAVFAAIGGAMFTLEVGFMSPSFVGIVPSIEMVIYTAVGGRMSIF 300 SGYSVANFKIFAFCAAAVFAA+GGA+FTLEVGFMSPSFVGIVPSIEMVIYTAVGGR+SIF Sbjct: 241 SGYSVANFKIFAFCAAAVFAAVGGALFTLEVGFMSPSFVGIVPSIEMVIYTAVGGRLSIF 300 Query: 301 GAVWGALLVNFAKTSLSESFPQLWLFGLGALFIAVVLAFPNGLSGIWADHVQPRIDRLLA 360 GAV+G+LLVNFAKTSLSE+FPQLWLFGLGALFIAVVLAFPNGL+GIW D+VQPRIDRLLA Sbjct: 301 GAVYGSLLVNFAKTSLSETFPQLWLFGLGALFIAVVLAFPNGLAGIWGDYVQPRIDRLLA 360 Query: 361 SRKSKSA-AGLIADGAPAE 378 SR KS GL+A+GAPAE Sbjct: 361 SRSKKSGNGGLVANGAPAE 379 >ref|YP_783500.1| inner-membrane translocator [Rhodopseudomonas palustris BisA53] gb|ABJ08520.1| inner-membrane translocator [Rhodopseudomonas palustris BisA53] Length = 384 Score = 611 bits (1576), Expect = e-173, Method: Compositional matrix adjust. Identities = 312/384 (81%), Positives = 349/384 (90%), Gaps = 6/384 (1%) Query: 1 MIINSRFFNRSELLGFLALAVLLFLVLPLSLDIFRLNLVAKYLTYAFVGIGLVLCWGYGG 60 MI N+RFFNR+ELLG LA+LL ++LPLSLDIFRLNLVAKYL+YAFV IGLVLCWG+GG Sbjct: 1 MIENTRFFNRTELLGLAVLALLLVVILPLSLDIFRLNLVAKYLSYAFVAIGLVLCWGFGG 60 Query: 61 ILSLGQGVFFGLGGYCMAMYLKLEASSVANTKIQSTPGIPDFMDWNQLTSLPFFWKPFHS 120 ILSLGQGVFFG+GGYCMAMYLKLEASSVANTKIQSTPGIPDFMDWNQLT +P+FW+P+HS Sbjct: 61 ILSLGQGVFFGMGGYCMAMYLKLEASSVANTKIQSTPGIPDFMDWNQLTQIPWFWQPYHS 120 Query: 121 FPVALIAIILVPAIFSFIIGAAMFKRRVGGVYFAIITQAIAAIMTILIVGQQGYTGGING 180 + +++I+ +PA+F+F+IGAAMFKRRVGGVYFAIITQA+AAI+TILI+GQQGYTGGING Sbjct: 121 LTLTILSILTLPALFAFVIGAAMFKRRVGGVYFAIITQAVAAILTILIIGQQGYTGGING 180 Query: 181 ITDLRTLHGWDIRTDHAKYILYFVEVVLLFGCICAAQFIRLTKLGRILVAMREQEDRVRF 240 ITDLRTL GWDIR DHAK++LYFVEVVLLFGCI A F+R +K GR+LVAMRE+EDRVRF Sbjct: 181 ITDLRTLQGWDIRPDHAKFVLYFVEVVLLFGCILLALFVRHSKFGRVLVAMREKEDRVRF 240 Query: 241 SGYSVANFKIFAFCAAAVFAAIGGAMFTLEVGFMSPSFVGIVPSIEMVIYTAVGGRMSIF 300 SGYSVANFKIFAFC AA+FAA+GGAMFTL VGFMSPSFVGIVPSIEMVIYTAVGGRMSIF Sbjct: 241 SGYSVANFKIFAFCLAAMFAAVGGAMFTLNVGFMSPSFVGIVPSIEMVIYTAVGGRMSIF 300 Query: 301 GAVWGALLVNFAKTSLSESFPQLWLFGLGALFIAVVLAFPNGLSGIWADHVQPRIDRLLA 360 GAV+G LLV+FAKT LSESFPQLWLFGLGALFIAVVLAFPNGL+GIW DHV RIDRLLA Sbjct: 301 GAVYGTLLVSFAKTGLSESFPQLWLFGLGALFIAVVLAFPNGLAGIWRDHVMSRIDRLLA 360 Query: 361 SRKSKS------AAGLIADGAPAE 378 RKS S + G +ADGAPAE Sbjct: 361 KRKSGSDHSNGKSFGPVADGAPAE 384 >ref|YP_001208701.1| branched chain amino acid ABC transporter permease [Bradyrhizobium sp. ORS 278] emb|CAL80486.1| Putative branched-chain amino acid ABC transporter, permease protein [Bradyrhizobium sp. ORS 278] Length = 378 Score = 608 bits (1568), Expect = e-172, Method: Compositional matrix adjust. Identities = 337/378 (89%), Positives = 359/378 (94%), Gaps = 1/378 (0%) Query: 2 IINSRFFNRSELLGFLALAVLLFLVLPLSLDIFRLNLVAKYLTYAFVGIGLVLCWGYGGI 61 +INSRFFNRSEL+GF++L +LL ++LPL+LDIFRLNLVAKYLTY+FV IGLVLCWG+GGI Sbjct: 1 MINSRFFNRSELIGFVSLLLLLVVILPLALDIFRLNLVAKYLTYSFVAIGLVLCWGFGGI 60 Query: 62 LSLGQGVFFGLGGYCMAMYLKLEASSVANTKIQSTPGIPDFMDWNQLTSLPFFWKPFHSF 121 LSLGQGVFFGLGGYCMAM+LKLEASSV NTKIQSTPGIPDFMDWNQLT+LPFFWKPF SF Sbjct: 61 LSLGQGVFFGLGGYCMAMFLKLEASSVENTKIQSTPGIPDFMDWNQLTALPFFWKPFASF 120 Query: 122 PVALIAIILVPAIFSFIIGAAMFKRRVGGVYFAIITQAIAAIMTILIVGQQGYTGGINGI 181 P AL AIILVPAIFSFIIGAAMFKRRVGGVYFAIITQAIAAIMTILIVGQQGYTGGINGI Sbjct: 121 PFALAAIILVPAIFSFIIGAAMFKRRVGGVYFAIITQAIAAIMTILIVGQQGYTGGINGI 180 Query: 182 TDLRTLHGWDIRTDHAKYILYFVEVVLLFGCICAAQFIRLTKLGRILVAMREQEDRVRFS 241 TDLRTLHGWDIRTDHAKYILYFVEV LF I AQFIRLTKLGRILVAMREQEDRVRFS Sbjct: 181 TDLRTLHGWDIRTDHAKYILYFVEVFFLFAAILVAQFIRLTKLGRILVAMREQEDRVRFS 240 Query: 242 GYSVANFKIFAFCAAAVFAAIGGAMFTLEVGFMSPSFVGIVPSIEMVIYTAVGGRMSIFG 301 GYSVANFKIFAFCAAAVFAA+GGA+FTLEVGFMSPSFVGIVPSIEMVIYTAVGGR+SIFG Sbjct: 241 GYSVANFKIFAFCAAAVFAAVGGALFTLEVGFMSPSFVGIVPSIEMVIYTAVGGRLSIFG 300 Query: 302 AVWGALLVNFAKTSLSESFPQLWLFGLGALFIAVVLAFPNGLSGIWADHVQPRIDRLLAS 361 AV+G+LLVNFAKTSLSE+FPQLWLFGLGALFIAVVLAFPNGL+GIW D+VQPRID+LLAS Sbjct: 301 AVYGSLLVNFAKTSLSETFPQLWLFGLGALFIAVVLAFPNGLAGIWGDYVQPRIDKLLAS 360 Query: 362 RKSKSA-AGLIADGAPAE 378 R KS GL+ADGAPAE Sbjct: 361 RTKKSGNGGLVADGAPAE 378 >ref|NP_767609.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC46234.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 380 Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust. Identities = 308/380 (81%), Positives = 339/380 (89%), Gaps = 3/380 (0%) Query: 2 IINSRFFNRSELLGFLALAVLLFLVLPLSLDIFRLNLVAKYLTYAFVGIGLVLCWGYGGI 61 + ++RFFNRSEL+G L LAV L +VLPLSLD+FRLNLVAKYLTYAFV +GLV+CWGYGGI Sbjct: 1 MTDNRFFNRSELIGILVLAVFLVVVLPLSLDVFRLNLVAKYLTYAFVALGLVICWGYGGI 60 Query: 62 LSLGQGVFFGLGGYCMAMYLKLEASSVANTKIQSTPGIPDFMDWNQLTSLPFFWKPFHSF 121 LSLGQGVFFGLGGYCMAM+LKLEASSV NTKIQSTPGIPDFMDWNQ+T+LPFFWKPF+S Sbjct: 61 LSLGQGVFFGLGGYCMAMFLKLEASSVENTKIQSTPGIPDFMDWNQITALPFFWKPFNSL 120 Query: 122 PVALIAIILVPAIFSFIIGAAMFKRRVGGVYFAIITQAIAAIMTILIVGQQGYTGGINGI 181 + AIILVP IF+ IIG AMFKRRVGG YFAIITQA+AAI+TILIVGQQGYTGGING+ Sbjct: 121 TFTIAAIILVPGIFALIIGTAMFKRRVGGTYFAIITQAVAAILTILIVGQQGYTGGINGM 180 Query: 182 TDLRTLHGWDIRTDHAKYILYFVEVVLLFGCICAAQFIRLTKLGRILVAMREQEDRVRFS 241 TDLRTL GWDIR DHAK +LYF EV LLF CI AQF+R +KLGRILVAMRE+EDRVRFS Sbjct: 181 TDLRTLKGWDIRPDHAKIVLYFFEVGLLFACIMIAQFVRHSKLGRILVAMREKEDRVRFS 240 Query: 242 GYSVANFKIFAFCAAAVFAAIGGAMFTLEVGFMSPSFVGIVPSIEMVIYTAVGGRMSIFG 301 GYSVANFKIFAFC AAVFAAIGGAMF L VGFMSPSFVGIVPSIEMVIYTAVGGR+SI G Sbjct: 241 GYSVANFKIFAFCIAAVFAAIGGAMFALNVGFMSPSFVGIVPSIEMVIYTAVGGRLSILG 300 Query: 302 AVWGALLVNFAKTSLSESFPQLWLFGLGALFIAVVLAFPNGLSGIWADHVQPRIDRLLAS 361 A++G LLVNFAKTSLSE+FP+LWLFGLG LFIAVVLAFPNGL+GIW D+VQPRIDRL++S Sbjct: 301 AIYGTLLVNFAKTSLSETFPELWLFGLGGLFIAVVLAFPNGLAGIWGDYVQPRIDRLISS 360 Query: 362 RKSKSAA---GLIADGAPAE 378 RK K +ADGAPAE Sbjct: 361 RKPKPEGWTDSSVADGAPAE 380 >ref|YP_004675353.1| putative ABC transporter permease [Hyphomicrobium sp. MC1] emb|CCB64779.1| putative ABC transporter, permease [Hyphomicrobium sp. MC1] Length = 380 Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust. Identities = 302/380 (79%), Positives = 337/380 (88%), Gaps = 2/380 (0%) Query: 1 MIINSRFFNRSELLGFLALAVLLFLVLPLSLDIFRLNLVAKYLTYAFVGIGLVLCWGYGG 60 M N RFF+RSEL+G LA+LL +VLP++LD FRLNLVAKYLTY+FV +GLV+CWGYGG Sbjct: 1 MNANPRFFSRSELVGLAVLALLLVVVLPMTLDNFRLNLVAKYLTYSFVALGLVICWGYGG 60 Query: 61 ILSLGQGVFFGLGGYCMAMYLKLEASSVANTKIQSTPGIPDFMDWNQLTSLPFFWKPFHS 120 ILSLGQGVFFG+GGYCMAM+LKLEASSVANTKIQSTPGIPDFMDWNQ+T LPFFW+PFHS Sbjct: 61 ILSLGQGVFFGIGGYCMAMFLKLEASSVANTKIQSTPGIPDFMDWNQITQLPFFWEPFHS 120 Query: 121 FPVALIAIILVPAIFSFIIGAAMFKRRVGGVYFAIITQAIAAIMTILIVGQQGYTGGING 180 A++A+ +VPA+F+FIIGAAMFKRRV GVYFAIITQAIAAI+TILIVGQQGYTGGING Sbjct: 121 LTFAILAVFVVPAVFAFIIGAAMFKRRVSGVYFAIITQAIAAILTILIVGQQGYTGGING 180 Query: 181 ITDLRTLHGWDIRTDHAKYILYFVEVVLLFGCICAAQFIRLTKLGRILVAMREQEDRVRF 240 ITDLRTLHGWDIRTD AK ILYFVEV +LF C+ A F++ +KLGRILVAMRE+EDRVRF Sbjct: 181 ITDLRTLHGWDIRTDSAKVILYFVEVAVLFACLLVALFVKRSKLGRILVAMREKEDRVRF 240 Query: 241 SGYSVANFKIFAFCAAAVFAAIGGAMFTLEVGFMSPSFVGIVPSIEMVIYTAVGGRMSIF 300 SGYSVANFKIFAFC +AVFA+IGGA+FTLEVGFMSPSFVGIVPSIEMVI+ AVGGRMSIF Sbjct: 241 SGYSVANFKIFAFCLSAVFASIGGALFTLEVGFMSPSFVGIVPSIEMVIFAAVGGRMSIF 300 Query: 301 GAVWGALLVNFAKTSLSESFPQLWLFGLGALFIAVVLAFPNGLSGIWADHVQPRIDRLLA 360 GAV+G LLVN+AKTSLSESFPQLW G GALFIAVVL FP GL+G W D+VQP IDRL + Sbjct: 301 GAVYGTLLVNYAKTSLSESFPQLWQLGFGALFIAVVLLFPGGLAGAWNDYVQPTIDRLFS 360 Query: 361 SRKSKSAAG--LIADGAPAE 378 K KS A IADGAPAE Sbjct: 361 RNKGKSLASGQPIADGAPAE 380