BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0073.p (308 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001236826.1| two component LuxR family transcriptional re... 490 e-136 ref|NP_767605.1| two-component response regulator [Bradyrhizobiu... 475 e-132 ref|YP_001208705.1| CheY/LuxR family two-component transcription... 474 e-132 ref|YP_484871.1| two component LuxR family transcriptional regul... 452 e-125 ref|YP_783504.1| two component LuxR family transcriptional regul... 444 e-123 >ref|YP_001236826.1| two component LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ32920.1| two component transcriptional regulator, LuxR family [Bradyrhizobium sp. BTAi1] Length = 305 Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust. Identities = 245/308 (79%), Positives = 270/308 (87%), Gaps = 3/308 (0%) Query: 1 MTIEQKKRDVALVVDDSPETLRLLTDALDGAGMTVMVALDGASAMRIVDQITPDIVLLDA 60 M+ + KKRDVALVVDDSPETLRLLTDALDGAGMTVMVALDGA+AMRIVDQITPDI+LLDA Sbjct: 1 MSTDSKKRDVALVVDDSPETLRLLTDALDGAGMTVMVALDGAAAMRIVDQITPDIILLDA 60 Query: 61 VMPGMDGFETCRRLKRDARVHGVPIIFMTGLAETEHIVRGLEAGGVDYVTKPIVVEEMLA 120 VMPG+DGFETCR+LKR+A + VP+IFMTGLA+TEHIV+GLEAGGVDYVTKPI VEEMLA Sbjct: 61 VMPGIDGFETCRKLKREAGLSNVPVIFMTGLADTEHIVQGLEAGGVDYVTKPIAVEEMLA 120 Query: 121 RIRVHLANARMTQSARAALDVSGRYLLAVNSAGALLWATPQAQRLLSDTLADAADNFALP 180 RIRVHLANARMTQSARAALDVSGR+LLAVN G L+WATPQAQRLLSD+L A+ LP Sbjct: 121 RIRVHLANARMTQSARAALDVSGRFLLAVNREGRLMWATPQAQRLLSDSLG-TAEELVLP 179 Query: 181 DPMPQWLEQAQKGGTGKKTATVASFPGNEQLRLQYMGKLGPNEFLLRLAKDTSGDMPAEF 240 D + QWL+QAQKG G K +AS P + +LRL YMG GPNEFLLRLAK++SG++P EF Sbjct: 180 DALRQWLDQAQKGKGGTK--PMASVPDHPELRLYYMGGAGPNEFLLRLAKESSGELPKEF 237 Query: 241 SSELGLTTREGEVLSWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRTAAAAIA 300 SSE GLT RE EVLSWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRTAAAAIA Sbjct: 238 SSEFGLTVRESEVLSWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRTAAAAIA 297 Query: 301 VDARHRKS 308 R+S Sbjct: 298 TGLTRRES 305 >ref|NP_767605.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC46230.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 306 Score = 475 bits (1222), Expect = e-132, Method: Compositional matrix adjust. Identities = 243/308 (78%), Positives = 267/308 (86%), Gaps = 2/308 (0%) Query: 1 MTIEQKKRDVALVVDDSPETLRLLTDALDGAGMTVMVALDGASAMRIVDQITPDIVLLDA 60 M+IE KKRDVALVVDDSPETLRLLTDALDGAGMTVMVALDGA+AMRIV+QITPDIVLLDA Sbjct: 1 MSIESKKRDVALVVDDSPETLRLLTDALDGAGMTVMVALDGAAAMRIVEQITPDIVLLDA 60 Query: 61 VMPGMDGFETCRRLKRDARVHGVPIIFMTGLAETEHIVRGLEAGGVDYVTKPIVVEEMLA 120 VMPG+DGFETCRRLKRDA + VP+IFMTGLAETEHIVRGL+AGGVDYVTKPIV+EEMLA Sbjct: 61 VMPGIDGFETCRRLKRDAGLANVPVIFMTGLAETEHIVRGLDAGGVDYVTKPIVIEEMLA 120 Query: 121 RIRVHLANARMTQSARAALDVSGRYLLAVNSAGALLWATPQAQRLLSDTLADAADNFALP 180 RIRVHL NAR+TQSARAALDVSGR+L AVN G++LWATPQAQ+LLSD AD+FALP Sbjct: 121 RIRVHLGNARLTQSARAALDVSGRFLFAVNRQGSILWATPQAQKLLSDHHGAQADDFALP 180 Query: 181 DPMPQWLEQAQKGGTGKKTATVASFPGNEQLRLQYMGKLGPNEFLLRLAKDTSGDMPAEF 240 + WLEQA+ G+ K AS P N QLR YMG+ PNEFLLRL+K++ +P EF Sbjct: 181 PSLLHWLEQAKGKGSSKSQG--ASLPDNPQLRFYYMGETAPNEFLLRLSKESGTALPPEF 238 Query: 241 SSELGLTTREGEVLSWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRTAAAAIA 300 +SELGLTTREGEVL+WLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRTAAAAIA Sbjct: 239 TSELGLTTREGEVLAWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRTAAAAIA 298 Query: 301 VDARHRKS 308 A R S Sbjct: 299 TSATRRNS 306 >ref|YP_001208705.1| CheY/LuxR family two-component transcriptional regulator [Bradyrhizobium sp. ORS 278] emb|CAL80490.1| Two-component transcriptional regulator, CheY-LuxR families (two-component signal transduction system) [Bradyrhizobium sp. ORS 278] Length = 305 Score = 474 bits (1220), Expect = e-132, Method: Compositional matrix adjust. Identities = 243/308 (78%), Positives = 267/308 (86%), Gaps = 3/308 (0%) Query: 1 MTIEQKKRDVALVVDDSPETLRLLTDALDGAGMTVMVALDGASAMRIVDQITPDIVLLDA 60 M+ + KKRDVALVVDDSPETLRLLTDALDGAGMTVMVALDGA+AMRIVDQITPDI+LLDA Sbjct: 1 MSTDNKKRDVALVVDDSPETLRLLTDALDGAGMTVMVALDGAAAMRIVDQITPDIILLDA 60 Query: 61 VMPGMDGFETCRRLKRDARVHGVPIIFMTGLAETEHIVRGLEAGGVDYVTKPIVVEEMLA 120 VMPG+DGFETCR+LKR+A + VP+IFMTGLA+TEHIV+GL+AGGVDYVTKPI VEEMLA Sbjct: 61 VMPGIDGFETCRKLKREAGLSNVPVIFMTGLADTEHIVQGLDAGGVDYVTKPIAVEEMLA 120 Query: 121 RIRVHLANARMTQSARAALDVSGRYLLAVNSAGALLWATPQAQRLLSDTLADAADNFALP 180 RIRVHLANARMTQSARAALDVSGR+LLAVN G L+WATPQAQ+LLSD+ A D LP Sbjct: 121 RIRVHLANARMTQSARAALDVSGRFLLAVNREGRLMWATPQAQKLLSDSFGSAED-LVLP 179 Query: 181 DPMPQWLEQAQKGGTGKKTATVASFPGNEQLRLQYMGKLGPNEFLLRLAKDTSGDMPAEF 240 D + QWL+QAQK AS P + +LRL YMG GPNEFLLRLAK++SGD+P EF Sbjct: 180 DGLRQWLDQAQK--GKGAAKAAASIPDHPELRLYYMGGAGPNEFLLRLAKESSGDLPKEF 237 Query: 241 SSELGLTTREGEVLSWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRTAAAAIA 300 SSE GLTTREGEVLSWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRTAAAAIA Sbjct: 238 SSEFGLTTREGEVLSWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRTAAAAIA 297 Query: 301 VDARHRKS 308 R+S Sbjct: 298 TGLTRRES 305 >ref|YP_484871.1| two component LuxR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gb|ABD05960.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris HaA2] Length = 309 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 236/310 (76%), Positives = 264/310 (85%), Gaps = 3/310 (0%) Query: 1 MTIEQKKRDVALVVDDSPETLRLLTDALDGAGMTVMVALDGASAMRIVDQITPDIVLLDA 60 MT + KKRD+ LVVDDSPETLR+LTDALDGAGMTVMVALDGA+AMRIV+QITPDIVLLDA Sbjct: 1 MTNDLKKRDIVLVVDDSPETLRMLTDALDGAGMTVMVALDGAAAMRIVEQITPDIVLLDA 60 Query: 61 VMPGMDGFETCRRLKRDARVHGVPIIFMTGLAETEHIVRGLEAGGVDYVTKPIVVEEMLA 120 +MPG+DGFETCRRLKR+ V VP+IFMTGLAE+EHIVRGLEAGGVDYVTKPIV+ EMLA Sbjct: 61 IMPGLDGFETCRRLKRNPAVSDVPVIFMTGLAESEHIVRGLEAGGVDYVTKPIVIVEMLA 120 Query: 121 RIRVHLANARMTQSARAALDVSGRYLLAVNSAGALLWATPQAQRLLSDTLADAADNFA-- 178 RIRVHL NAR++QSARAALDVSGR+LLAV+ G +LWATPQAQ+LL+ A +A+ F Sbjct: 121 RIRVHLGNARLSQSARAALDVSGRFLLAVDRVGKVLWATPQAQKLLAADGA-SAEGFRLD 179 Query: 179 LPDPMPQWLEQAQKGGTGKKTATVASFPGNEQLRLQYMGKLGPNEFLLRLAKDTSGDMPA 238 LP P WLEQ G KT AS N++LRLQYMGKLGPNEFLLRLA+DTSG+ P Sbjct: 180 LPKPWLDWLEQVHSGLAQPKTPMKASLLRNDELRLQYMGKLGPNEFLLRLARDTSGESPK 239 Query: 239 EFSSELGLTTREGEVLSWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRTAAAA 298 EF++E GLT+RE EVL+WLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRTAAAA Sbjct: 240 EFTTEFGLTSRESEVLAWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRTAAAA 299 Query: 299 IAVDARHRKS 308 IA A R S Sbjct: 300 IATSASRRDS 309 >ref|YP_783504.1| two component LuxR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gb|ABJ08524.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisA53] Length = 309 Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust. Identities = 223/296 (75%), Positives = 254/296 (85%), Gaps = 3/296 (1%) Query: 1 MTIEQKKRDVALVVDDSPETLRLLTDALDGAGMTVMVALDGASAMRIVDQITPDIVLLDA 60 M E +KRD+ALVVDDSPETLR+LTDALDGAGMTVMVALDGA+AMRIV+QITPDIVLLDA Sbjct: 1 MNTEPRKRDIALVVDDSPETLRMLTDALDGAGMTVMVALDGAAAMRIVEQITPDIVLLDA 60 Query: 61 VMPGMDGFETCRRLKRDARVHGVPIIFMTGLAETEHIVRGLEAGGVDYVTKPIVVEEMLA 120 +MPG+DGFETCRRLK +A + VP+IFMTGLAETEHIVRGLEAGGVDYVTKPIV+ EM+A Sbjct: 61 MMPGIDGFETCRRLKLEAGLGDVPVIFMTGLAETEHIVRGLEAGGVDYVTKPIVIAEMIA 120 Query: 121 RIRVHLANARMTQSARAALDVSGRYLLAVNSAGALLWATPQAQRLLS-DTLADAADNFAL 179 RI+VHLANAR++QSARAALDVSGRYL AV+ G ++WATPQAQ+LL+ D +A ++AL Sbjct: 121 RIKVHLANARLSQSARAALDVSGRYLFAVSRTGNVIWATPQAQKLLAGDERQEAGASYAL 180 Query: 180 PDPMPQWLEQAQKGGTGKKTATVASFP-GNEQLRLQYMGKLGPNEFLLRLAKDTSGDMPA 238 P P +WLEQ G T K A + S P N +LRLQYMGKLGP+EFLLRL++D+ D Sbjct: 181 PQPWLEWLEQLHDGLTQPK-APLKSLPLRNNELRLQYMGKLGPDEFLLRLSRDSGTDTSK 239 Query: 239 EFSSELGLTTREGEVLSWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRT 294 + S ELGLTTRE EVLSWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRT Sbjct: 240 DLSKELGLTTRESEVLSWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRT 295