BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0067.p (242 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769913.1| uroporphyrin-III C-methyltransferase [Bradyrhiz... 383 e-104 ref|ZP_05844370.1| uroporphyrin-III C-methyltransferase [Rhodoba... 314 8e-84 ref|ZP_05781609.1| uroporphyrin-III C-methyltransferase [Citreic... 308 4e-82 ref|YP_003578190.1| uroporphyrinogen-III C-methyltransferase [Rh... 300 2e-79 ref|YP_916339.1| uroporphyrin-III C-methyltransferase [Paracoccu... 297 9e-79 >ref|NP_769913.1| uroporphyrin-III C-methyltransferase [Bradyrhizobium japonicum USDA 110] dbj|BAC48538.1| cobA [Bradyrhizobium japonicum USDA 110] Length = 243 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 206/240 (85%), Positives = 218/240 (90%) Query: 1 VSGFVSFVSAGPGDPELLTVKGTARLREADVVLYDDLASGAILDLARAGVNLVAVGKRAG 60 +SGFVSF+SAGPGDPELLT+KG ARLREADVVLYDDLASGAILDLAR G NLVAVGKRAG Sbjct: 1 MSGFVSFISAGPGDPELLTLKGAARLREADVVLYDDLASGAILDLARPGANLVAVGKRAG 60 Query: 61 RLSAKQHHVSRLLVDYAAAGVRVVRLKSGDAGIFGRLEEEIEALRAAGIGYEIIPGVTSA 120 R S KQHHV+RLLVDYAA G RVVRLKSGDAGIFGRLEEE+E LR AGIGYEI+PGVTSA Sbjct: 61 RPSTKQHHVNRLLVDYAATGARVVRLKSGDAGIFGRLEEELETLREAGIGYEIVPGVTSA 120 Query: 121 SVAAAQAGIPLTRRLTSRRVQFVTGADVTGELPADMNWAALADPEATTVVYMGRRTFPAL 180 VAAAQAGIPLTRR TSRRVQFVTGADVTGELP ++NWAALADPEATTVVYMGRRTFPAL Sbjct: 121 CVAAAQAGIPLTRRHTSRRVQFVTGADVTGELPQNLNWAALADPEATTVVYMGRRTFPAL 180 Query: 181 AVKLIAHGLAPDTPALLAESLGHADERLLRTTVAALAEQLAQAGAATAAAVILFGGLAPE 240 A KLIAHGLAP TPAL AESLG DERL+RTT+A LAEQLA+ GAA+ AAVILFG LA E Sbjct: 181 AAKLIAHGLAPTTPALFAESLGRPDERLVRTTIAELAEQLARGGAASTAAVILFGALAGE 240 >ref|ZP_05844370.1| uroporphyrin-III C-methyltransferase [Rhodobacter sp. SW2] gb|EEW24755.1| uroporphyrin-III C-methyltransferase [Rhodobacter sp. SW2] Length = 244 Score = 314 bits (804), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 170/240 (70%), Positives = 194/240 (80%), Gaps = 1/240 (0%) Query: 1 VSGFVSFVSAGPGDPELLTVKGTARLREADVVLYDDLASGAILDLARAGVNLVAVGKRAG 60 +SGFVSFVS+GPGDP+LLT+K ARL+ AD VL+DDL+SG IL AR G +LV VGKRAG Sbjct: 1 MSGFVSFVSSGPGDPDLLTLKAVARLQAADAVLFDDLSSGPILAHARPGADLVGVGKRAG 60 Query: 61 RLSAKQHHVSRLLVDYAAAGVRVVRLKSGDAGIFGRLEEEIEALRAAGIGYEIIPGVTSA 120 R S KQ HVSRLLVDYA G RVVRLKSGDAGIFGRLEEEI AL AAGIGYEIIPGVT+A Sbjct: 61 RPSPKQDHVSRLLVDYAKTGARVVRLKSGDAGIFGRLEEEITALTAAGIGYEIIPGVTAA 120 Query: 121 SVAAAQAGIPLTRRLTSRRVQFVTGADVTGELPADMNWAALADPEATTVVYMGRRTFPAL 180 S AAA AG+PLTRRLTSRRVQF+TGADVTGELP +N+AALADP ATTVVYMG+RTF L Sbjct: 121 SAAAAAAGLPLTRRLTSRRVQFITGADVTGELPEGLNFAALADPAATTVVYMGKRTFADL 180 Query: 181 AVKLIAHGLAPDTPALLAESLGHADERLLRTTVAALAEQLAQAGAATAAAVILFGGLAPE 240 A LIAHG+ PDTPALLA ++ ++ L R T+ +LA L Q + A+IL+G LAPE Sbjct: 181 ARNLIAHGMPPDTPALLAHAVSTPEQSLERHTIHSLA-TLLQGAQSQTPALILYGALAPE 239 >ref|ZP_05781609.1| uroporphyrin-III C-methyltransferase [Citreicella sp. SE45] gb|EEX15373.1| uroporphyrin-III C-methyltransferase [Citreicella sp. SE45] Length = 239 Score = 308 bits (789), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 163/238 (68%), Positives = 195/238 (81%), Gaps = 1/238 (0%) Query: 1 VSGFVSFVSAGPGDPELLTVKGTARLREADVVLYDDLASGAILDLARAGVNLVAVGKRAG 60 ++GFVSFV +GPGDPELLT+K RLR AD +L+DDL+SG IL+LARA +LV VGKRAG Sbjct: 1 MTGFVSFVGSGPGDPELLTLKAADRLRNADAILFDDLSSGPILELARAEADLVGVGKRAG 60 Query: 61 RLSAKQHHVSRLLVDYAAAGVRVVRLKSGDAGIFGRLEEEIEALRAAGIGYEIIPGVTSA 120 R S +Q HVSRLLVDYA +G +VVRLKSGD GIFGRLEEE+ AL+AAGI YEI+PGV SA Sbjct: 61 RPSPRQDHVSRLLVDYARSGQKVVRLKSGDGGIFGRLEEELVALKAAGIPYEIVPGVPSA 120 Query: 121 SVAAAQAGIPLTRRLTSRRVQFVTGADVTGELPADMNWAALADPEATTVVYMGRRTFPAL 180 AAA AGIPLTRRLT+RRVQFVTG DVTG LP D+N AALADP+A+TVV+MG+RTFPAL Sbjct: 121 CAAAAAAGIPLTRRLTARRVQFVTGHDVTGALPEDVNMAALADPDASTVVFMGKRTFPAL 180 Query: 181 AVKLIAHGLAPDTPALLAESLGHADERLLRTTVAALAEQLAQAGAATAAAVILFGGLA 238 A +LIAHGL P+TPALLAE++ D+R+ R TVA LA +L ++ A+IL+G LA Sbjct: 181 AERLIAHGLPPETPALLAEAVSTPDQRITRDTVAGLASKL-KSETRDRVALILYGPLA 237 >ref|YP_003578190.1| uroporphyrinogen-III C-methyltransferase [Rhodobacter capsulatus SB 1003] gb|AAC16191.1| uroporphyrin-III c-methyltransferase [Rhodobacter capsulatus SB 1003] gb|ADE85783.1| uroporphyrinogen-III C-methyltransferase-2 [Rhodobacter capsulatus SB 1003] Length = 242 Score = 300 bits (767), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 166/242 (68%), Positives = 194/242 (80%), Gaps = 3/242 (1%) Query: 1 VSGFVSFVSAGPGDPELLTVKGTARLREADVVLYDDLASGAILDLARA-GVNLVAVGKRA 59 +SGFVSFVS+GPGDPELLT+K RL +ADVVL+DDL++GA A G L+AVGKRA Sbjct: 1 MSGFVSFVSSGPGDPELLTLKAADRLAKADVVLFDDLSAGADPGAMPARGAELIAVGKRA 60 Query: 60 GRLSAKQHHVSRLLVDYAAAGVRVVRLKSGDAGIFGRLEEEIEALRAAGIGYEIIPGVTS 119 GR S KQ HVSRLLVD+A G RVVRLKSGD+G+FGRLEEE++AL AGIGYEIIPGV S Sbjct: 61 GRPSPKQDHVSRLLVDHALTGQRVVRLKSGDSGLFGRLEEELDALTGAGIGYEIIPGVPS 120 Query: 120 ASVAAAQAGIPLTRRLTSRRVQFVTGADVTGELPADMNWAALADPEATTVVYMGRRTFPA 179 A AAA +G+PLTRRLT+RRVQFVTGADVTG+LP +NWAALAD ATTVV+MG+RTFP Sbjct: 121 ACAAAAASGLPLTRRLTARRVQFVTGADVTGDLPEGLNWAALADKGATTVVFMGKRTFPK 180 Query: 180 LAVKLIAHGLAPDTPALLAESLGHADERLLRTTVAALAEQLAQAGAATAAAVILFGGL-A 238 LA LIAHGLAPDTPALLAE++GH + + R+TV LA LA A + A+IL+G L A Sbjct: 181 LAADLIAHGLAPDTPALLAEAVGHPGQSVTRSTVTDLAASLA-AERSDKPALILYGPLYA 239 Query: 239 PE 240 PE Sbjct: 240 PE 241 >ref|YP_916339.1| uroporphyrin-III C-methyltransferase [Paracoccus denitrificans PD1222] gb|ABL70643.1| uroporphyrinogen-III C-methyltransferase [Paracoccus denitrificans PD1222] Length = 244 Score = 297 bits (761), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 160/236 (67%), Positives = 189/236 (80%) Query: 3 GFVSFVSAGPGDPELLTVKGTARLREADVVLYDDLASGAILDLARAGVNLVAVGKRAGRL 62 G VSFVS+GPGDPELLT++ L EADVVLYDDLASG +L+ A L+ VGKRAGR Sbjct: 6 GLVSFVSSGPGDPELLTLRAARLLAEADVVLYDDLASGPVLEQAGPQAQLIGVGKRAGRP 65 Query: 63 SAKQHHVSRLLVDYAAAGVRVVRLKSGDAGIFGRLEEEIEALRAAGIGYEIIPGVTSASV 122 SAKQ HV+ LLV++A AG VVRLKSGD+GIFGRLEEE+ ALRA GI ++I+PGV SA Sbjct: 66 SAKQEHVNALLVEHARAGKHVVRLKSGDSGIFGRLEEELSALRAHGIPFQIVPGVPSAMA 125 Query: 123 AAAQAGIPLTRRLTSRRVQFVTGADVTGELPADMNWAALADPEATTVVYMGRRTFPALAV 182 AAA AG+PLTRR T+RR+QFVTGADVTG LP D NWAALADP ATTVV+MG+RTFP +A Sbjct: 126 AAAVAGLPLTRRQTARRLQFVTGADVTGGLPEDQNWAALADPRATTVVFMGQRTFPQMAA 185 Query: 183 KLIAHGLAPDTPALLAESLGHADERLLRTTVAALAEQLAQAGAATAAAVILFGGLA 238 L+ +GL PDTPALLAE++GH +RL+RTTVA LAEQLA G + A+IL+G LA Sbjct: 186 LLVENGLPPDTPALLAEAVGHPHQRLIRTTVARLAEQLATEGPSPHPALILYGPLA 241