BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0053.p (469 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769899.1| cobyric acid synthase [Bradyrhizobium japonicum... 823 0.0 ref|YP_003578202.1| cobyric acid synthase CobQ [Rhodobacter caps... 687 0.0 sp|P0CY57.1|COBQ_RHOCA RecName: Full=Cobyric acid synthase >gi|6... 684 0.0 ref|YP_353875.1| cobyric acid synthase [Rhodobacter sphaeroides ... 660 0.0 ref|ZP_05844356.1| cobyric acid synthase CobQ [Rhodobacter sp. S... 659 0.0 >ref|NP_769899.1| cobyric acid synthase [Bradyrhizobium japonicum USDA 110] sp|Q89Q71.1|COBQ_BRAJA RecName: Full=Cobyric acid synthase dbj|BAC48524.1| cobyric acid synthase [Bradyrhizobium japonicum USDA 110] Length = 482 Score = 823 bits (2127), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/469 (88%), Positives = 441/469 (94%) Query: 1 VGKSLIVAGLARAARRRGLRVLPFKPQNMSNNAAVTVDGGEIGRAQALQALAAGVEPHTD 60 VGKSLIVAGLARA RRGLRVLPFKPQNMSNNAAVTVDGGEIGRAQALQALAAGVEPHTD Sbjct: 14 VGKSLIVAGLARAFTRRGLRVLPFKPQNMSNNAAVTVDGGEIGRAQALQALAAGVEPHTD 73 Query: 61 MNPVLLKPESDVGAQIIVHGKRIATARAREYAGMKPSLMGAVLESFARLKQRADLVLVEG 120 MNPVLLKPE+DVGAQ++VHGKRIATARAREYA MKPSLMGAVLESF RLK RADLVLVEG Sbjct: 74 MNPVLLKPETDVGAQVVVHGKRIATARAREYAAMKPSLMGAVLESFERLKARADLVLVEG 133 Query: 121 AGSPAEVNLRKADIANMGFARRADVPVVLVGDIDRGGVIAQLVGIKTVIDPDDAAMIQGF 180 AGSPAEVNLRKADIANMGFAR+ADVPVVL+GDIDRGGVIAQLVGIKTVIDPDDAAMIQGF Sbjct: 134 AGSPAEVNLRKADIANMGFARKADVPVVLIGDIDRGGVIAQLVGIKTVIDPDDAAMIQGF 193 Query: 181 VINKFRGDPTLFDDGYRLIEARTAWRGFGVLPWFVRAGELPAEDALGLGEARKPGQCKIA 240 VINKFRGDPTLFDDGY+LIEA+TAWRGFGVLPWF RAGELPAEDALGL +ARKPGQCKIA Sbjct: 194 VINKFRGDPTLFDDGYKLIEAKTAWRGFGVLPWFARAGELPAEDALGLSDARKPGQCKIA 253 Query: 241 FLALSRIANFDDLDPLKLEPGVDLVMVRPGEAIPGDAKLVILPGSKSTRGDLAFLRAQGW 300 LALSRIANFDDLDPLKLE VDLVMVRPGEAIPGD +LVI+PGSKSTRGDLAFLRAQGW Sbjct: 254 CLALSRIANFDDLDPLKLEAAVDLVMVRPGEAIPGDVRLVIIPGSKSTRGDLAFLRAQGW 313 Query: 301 DIDLLAHHRRGGHVLGLCGGYQMLGHSVADPDGIEGPAGETRGLGLLDVTTTMTEQKTLT 360 DIDLLAH+RRGGHVLGLCGGYQMLG SVADPDGIEGPAG+T GLGLLDV T M+ QKTLT Sbjct: 314 DIDLLAHYRRGGHVLGLCGGYQMLGRSVADPDGIEGPAGDTPGLGLLDVQTVMSPQKTLT 373 Query: 361 RVSAVHAATSQPISAYEIHIGRTDGPDRARPFASLDGTAEGAVSANGRVHGSYLHGLFAS 420 RV+AVHAAT+QPI AYEIHIGRTDGPDRARPFA L+G EGA+S++GRV GSYLHGLF S Sbjct: 374 RVTAVHAATNQPIQAYEIHIGRTDGPDRARPFAKLNGEPEGAISSDGRVQGSYLHGLFTS 433 Query: 421 DEFRKAFLAQLDIAAADQPYGARVETALDALAKHIETHLDVDGLLALAR 469 D+FRKAFL +LDI A D+PY +RVE+ALDALA HIE HLDV+GLL+LAR Sbjct: 434 DDFRKAFLTKLDIPAGDEPYHSRVESALDALADHIEKHLDVEGLLSLAR 482 >ref|YP_003578202.1| cobyric acid synthase CobQ [Rhodobacter capsulatus SB 1003] sp|D5AV13.1|COBQ_RHOCB RecName: Full=Cobyric acid synthase gb|AAC16180.1| cobyric acid synthase [Rhodobacter capsulatus SB 1003] gb|ADE85795.1| cobyric acid synthase CobQ-1 [Rhodobacter capsulatus SB 1003] Length = 481 Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/469 (74%), Positives = 383/469 (81%) Query: 1 VGKSLIVAGLARAARRRGLRVLPFKPQNMSNNAAVTVDGGEIGRAQALQALAAGVEPHTD 60 VGKS++VAGL RAARRRGL V PFKPQNMSNNAAVT DGGEIGRAQALQALA G+EP TD Sbjct: 13 VGKSMLVAGLCRAARRRGLTVAPFKPQNMSNNAAVTADGGEIGRAQALQALACGLEPVTD 72 Query: 61 MNPVLLKPESDVGAQIIVHGKRIATARAREYAGMKPSLMGAVLESFARLKQRADLVLVEG 120 MNP+LLKPESDVGAQ++V GKR+ T RAR YA +KP LMGAVLESF RLK DLV+VEG Sbjct: 73 MNPILLKPESDVGAQVVVQGKRLTTTRARVYATLKPQLMGAVLESFNRLKATHDLVIVEG 132 Query: 121 AGSPAEVNLRKADIANMGFARRADVPVVLVGDIDRGGVIAQLVGIKTVIDPDDAAMIQGF 180 AGSPAEVNLR DIANMGFAR ADVPVVLVGDIDRGGVIAQ+VG + V+DP DA MI GF Sbjct: 133 AGSPAEVNLRAGDIANMGFARAADVPVVLVGDIDRGGVIAQIVGTQAVLDPADAEMISGF 192 Query: 181 VINKFRGDPTLFDDGYRLIEARTAWRGFGVLPWFVRAGELPAEDALGLGEARKPGQCKIA 240 +INKFRGD TLFDDGYRLI ART WRGFG LPWF A +LPAEDAL + G IA Sbjct: 193 LINKFRGDVTLFDDGYRLIGARTGWRGFGTLPWFPLAHKLPAEDALDIASGPATGGTVIA 252 Query: 241 FLALSRIANFDDLDPLKLEPGVDLVMVRPGEAIPGDAKLVILPGSKSTRGDLAFLRAQGW 300 L LSRIANFDDLDPL EPGV +VMV+PG+ IP +A+LVILPGSKSTRGDLAFLR QGW Sbjct: 253 CLTLSRIANFDDLDPLAAEPGVRMVMVQPGQPIPAEARLVILPGSKSTRGDLAFLREQGW 312 Query: 301 DIDLLAHHRRGGHVLGLCGGYQMLGHSVADPDGIEGPAGETRGLGLLDVTTTMTEQKTLT 360 DIDL AH RRGGHVLG+CGGYQMLG SVADP+GIEGPAG T GLGLLDV T MT K LT Sbjct: 313 DIDLAAHVRRGGHVLGICGGYQMLGRSVADPEGIEGPAGTTPGLGLLDVETVMTPDKRLT 372 Query: 361 RVSAVHAATSQPISAYEIHIGRTDGPDRARPFASLDGTAEGAVSANGRVHGSYLHGLFAS 420 RV A HA + + YEIHIGRT+G DRARPFA ++G EGA+SA+GRV GSYLHGLF + Sbjct: 373 RVRATHAGSGLAVEGYEIHIGRTEGADRARPFAIVEGQNEGAMSADGRVIGSYLHGLFGA 432 Query: 421 DEFRKAFLAQLDIAAADQPYGARVETALDALAKHIETHLDVDGLLALAR 469 D FR AFL L I A+ Q + A VE ALDALA H+ETHLDV G+LALAR Sbjct: 433 DAFRAAFLRGLGIRASGQSHAAGVEAALDALADHLETHLDVTGILALAR 481 >sp|P0CY57.1|COBQ_RHOCA RecName: Full=Cobyric acid synthase emb|CAA86584.1| cobQ [Rhodobacter capsulatus] Length = 483 Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/471 (74%), Positives = 384/471 (81%), Gaps = 2/471 (0%) Query: 1 VGKSLIVAGLARAARRRGLRVLPFKPQNMSNNAAVTVDGGEIGRAQALQALAAGVEPHTD 60 VGKS++VAGL RAARRRGL V PFKPQNMSNNAAVT DGGEIGRAQALQALA G+EP TD Sbjct: 13 VGKSMLVAGLCRAARRRGLTVAPFKPQNMSNNAAVTADGGEIGRAQALQALACGLEPVTD 72 Query: 61 MNPVLLKPESDVGAQIIVHGKRIATARAREYAGMKPSLMGAVLESFARLKQRADLVLVEG 120 MNP+LLKPESDVGAQ++V GKR+ T RAR+YA +KP LMGAVLESF RLK DLV+VEG Sbjct: 73 MNPILLKPESDVGAQVVVQGKRLTTTRARDYATLKPQLMGAVLESFNRLKATHDLVIVEG 132 Query: 121 AGSPAEVNLRKADIANMGFARRADVPVVLVGDIDRGGVIAQLVGIKTVIDPDDAAMIQGF 180 AGSPAEVNLR DIANMGFAR ADVPVVLVGDIDRGGVIAQ+VG + V+DP DA MI GF Sbjct: 133 AGSPAEVNLRAGDIANMGFARAADVPVVLVGDIDRGGVIAQIVGTQAVLDPADAEMISGF 192 Query: 181 VINKFRGDPTLFDDGYRLIEARTAWRGFGVLPWFVRAGELPAEDALGLGEARKPGQCKIA 240 +INKFRGD TLFDDGYRLI ART WRGFG LPWF A +LPAEDAL + G IA Sbjct: 193 LINKFRGDVTLFDDGYRLIGARTGWRGFGTLPWFPLAHKLPAEDALDIASGPATGGTVIA 252 Query: 241 FLALSRIANFDDLDPLKLEPGVDLVMVRPGEAIPGDAKLVILPGSKSTRGDLAFLRAQGW 300 L LSRIANFDDLDPL EPGV +VMV+PG+ IP +A+LVILPGSKSTRGDLAFLR QGW Sbjct: 253 CLTLSRIANFDDLDPLAAEPGVRMVMVQPGQPIPAEARLVILPGSKSTRGDLAFLREQGW 312 Query: 301 DIDLLAHHRRGGHVLGLCGGYQMLGHSVADPDGIEGPAGETRGLGLLDVTTTMTEQKTLT 360 DIDL AH RRGGHVLG+CGGYQMLG SVADP+GIEGPAG T GLGLLDV T MT K LT Sbjct: 313 DIDLAAHVRRGGHVLGICGGYQMLGRSVADPEGIEGPAGTTPGLGLLDVETVMTPDKRLT 372 Query: 361 --RVSAVHAATSQPISAYEIHIGRTDGPDRARPFASLDGTAEGAVSANGRVHGSYLHGLF 418 RV A HA + + YEIHIGRT+G DRARPFA ++G EGA+SA+GRV GSYLHGLF Sbjct: 373 RVRVRATHAGSGLAVEGYEIHIGRTEGADRARPFAIVEGQNEGAMSADGRVIGSYLHGLF 432 Query: 419 ASDEFRKAFLAQLDIAAADQPYGARVETALDALAKHIETHLDVDGLLALAR 469 +D FR AFL L I A+ Q + A VE ALDALA H+ETHLDV G+LALAR Sbjct: 433 GADAFRAAFLRGLGIRASGQSHAAGVEAALDALADHLETHLDVTGILALAR 483 >ref|YP_353875.1| cobyric acid synthase [Rhodobacter sphaeroides 2.4.1] sp|Q3IZR0.1|COBQ_RHOS4 RecName: Full=Cobyric acid synthase gb|ABA79974.1| adenosylcobyric acid synthase (glutamine-hydrolysing) [Rhodobacter sphaeroides 2.4.1] Length = 481 Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/469 (71%), Positives = 380/469 (81%) Query: 1 VGKSLIVAGLARAARRRGLRVLPFKPQNMSNNAAVTVDGGEIGRAQALQALAAGVEPHTD 60 VGKSL+VAGL RAARRRGL V PFKPQNMSNNAAVT DGGEIGRAQALQA A+G+EP TD Sbjct: 13 VGKSLLVAGLCRAARRRGLSVAPFKPQNMSNNAAVTADGGEIGRAQALQARASGLEPLTD 72 Query: 61 MNPVLLKPESDVGAQIIVHGKRIATARAREYAGMKPSLMGAVLESFARLKQRADLVLVEG 120 MNPVLLKPESD G+Q+IV G+R+ T RAR++ KP+LM VLESFARL DLV+VEG Sbjct: 73 MNPVLLKPESDHGSQVIVQGRRVGTLRARDWFERKPALMAPVLESFARLTAAHDLVIVEG 132 Query: 121 AGSPAEVNLRKADIANMGFARRADVPVVLVGDIDRGGVIAQLVGIKTVIDPDDAAMIQGF 180 AGSPAEVNLR+ DIANMGFAR A VPVVL GDIDRGGVIAQLVG + VIDP+DAAMI GF Sbjct: 133 AGSPAEVNLRRGDIANMGFARTAGVPVVLAGDIDRGGVIAQLVGTQAVIDPEDAAMIAGF 192 Query: 181 VINKFRGDPTLFDDGYRLIEARTAWRGFGVLPWFVRAGELPAEDALGLGEARKPGQCKIA 240 ++NKFRGD LFD+GYRLIEART WRG+GV+P+F A LPAEDAL LG G +A Sbjct: 193 LVNKFRGDVRLFDEGYRLIEARTGWRGYGVVPFFPEAALLPAEDALDLGRPTGQGALTVA 252 Query: 241 FLALSRIANFDDLDPLKLEPGVDLVMVRPGEAIPGDAKLVILPGSKSTRGDLAFLRAQGW 300 +LA SR+ANFDDLDPLK EPG+ + MVRPG+ IP +A LVILPG+KSTRGDLAFLRAQGW Sbjct: 253 WLAFSRVANFDDLDPLKQEPGLTVRMVRPGQPIPAEADLVILPGTKSTRGDLAFLRAQGW 312 Query: 301 DIDLLAHHRRGGHVLGLCGGYQMLGHSVADPDGIEGPAGETRGLGLLDVTTTMTEQKTLT 360 D+DL AHHRRGG VLG+CGGYQMLG SVADP+G+EG G T GLGLLDV T M K LT Sbjct: 313 DVDLRAHHRRGGRVLGICGGYQMLGRSVADPEGLEGAPGVTEGLGLLDVETVMHPDKRLT 372 Query: 361 RVSAVHAATSQPISAYEIHIGRTDGPDRARPFASLDGTAEGAVSANGRVHGSYLHGLFAS 420 RV+ H A+ ++ YEIHIG T+GPD ARPFA ++G EGA SA+GRV GSYLHG+F + Sbjct: 373 RVAGRHRASGAELTGYEIHIGATEGPDCARPFAEIEGRPEGATSADGRVVGSYLHGMFGA 432 Query: 421 DEFRKAFLAQLDIAAADQPYGARVETALDALAKHIETHLDVDGLLALAR 469 D FR+AFL L A +D Y ARVET LDALA H+ETH+DV GLLALAR Sbjct: 433 DGFRRAFLESLGAATSDLAYDARVETVLDALADHLETHVDVAGLLALAR 481 >ref|ZP_05844356.1| cobyric acid synthase CobQ [Rhodobacter sp. SW2] gb|EEW24741.1| cobyric acid synthase CobQ [Rhodobacter sp. SW2] Length = 484 Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/469 (71%), Positives = 374/469 (79%) Query: 1 VGKSLIVAGLARAARRRGLRVLPFKPQNMSNNAAVTVDGGEIGRAQALQALAAGVEPHTD 60 VGKSL+VAGL RAA+ RGL+V PFKPQNMSNNAAVT DGGEIGRAQALQALA G+ PHTD Sbjct: 16 VGKSLLVAGLCRAAKVRGLQVAPFKPQNMSNNAAVTADGGEIGRAQALQALACGLAPHTD 75 Query: 61 MNPVLLKPESDVGAQIIVHGKRIATARAREYAGMKPSLMGAVLESFARLKQRADLVLVEG 120 MNPVLLKPES++GAQ++V G+R+AT +AR+YA +KPSLM VL+SFARLK DLV+VEG Sbjct: 76 MNPVLLKPESEMGAQVVVQGRRLATVKARDYAALKPSLMAPVLDSFARLKAGVDLVVVEG 135 Query: 121 AGSPAEVNLRKADIANMGFARRADVPVVLVGDIDRGGVIAQLVGIKTVIDPDDAAMIQGF 180 AGSPAEVNLR DIANMGFAR AD PV+LVGDIDRGGVIAQ+VG K V+DP DAAMI GF Sbjct: 136 AGSPAEVNLRAGDIANMGFARAADCPVMLVGDIDRGGVIAQMVGTKVVLDPLDAAMISGF 195 Query: 181 VINKFRGDPTLFDDGYRLIEARTAWRGFGVLPWFVRAGELPAEDALGLGEARKPGQCKIA 240 +INKFRGDP LFD+GYRLI A+T W GFGVLP+F A LPAEDAL L + G K+A Sbjct: 196 LINKFRGDPRLFDEGYRLIAAQTGWHGFGVLPFFDAASRLPAEDALDLPKGGGSGAFKVA 255 Query: 241 FLALSRIANFDDLDPLKLEPGVDLVMVRPGEAIPGDAKLVILPGSKSTRGDLAFLRAQGW 300 LALSRIANFDDLDPL EPGV L M+ G+AIPGD LVI+PGSKSTRGDLA+LRAQGW Sbjct: 256 CLALSRIANFDDLDPLAQEPGVSLRMIGAGQAIPGDTDLVIIPGSKSTRGDLAYLRAQGW 315 Query: 301 DIDLLAHHRRGGHVLGLCGGYQMLGHSVADPDGIEGPAGETRGLGLLDVTTTMTEQKTLT 360 DIDL AH RRGG VLG+CGGYQMLG + DP G+EG GET GLGLL+V T MT K LT Sbjct: 316 DIDLAAHVRRGGQVLGICGGYQMLGQVIRDPQGLEGAPGETPGLGLLEVETLMTPDKRLT 375 Query: 361 RVSAVHAATSQPISAYEIHIGRTDGPDRARPFASLDGTAEGAVSANGRVHGSYLHGLFAS 420 R AVHAAT + YEIHIGRT+GP RARPFA + G EGA S +GR+ GSYLHG+FA Sbjct: 376 RTQAVHAATGTAMEGYEIHIGRTEGPARARPFAHVAGAPEGACSLDGRIIGSYLHGMFAQ 435 Query: 421 DEFRKAFLAQLDIAAADQPYGARVETALDALAKHIETHLDVDGLLALAR 469 D FR AFL QL + Y A VE LDALA H+E HLDV GLLALAR Sbjct: 436 DGFRSAFLRQLGAQPSGLAYSAGVEATLDALAAHLEAHLDVPGLLALAR 484