BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0051.p (313 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769897.1| cobalamin biosynthesis protein [Bradyrhizobium ... 473 e-131 sp|P0CY56.1|COBD_RHOCA RecName: Full=Cobalamin biosynthesis prot... 367 e-100 ref|YP_003578205.1| cobalamin biosynthesis protein CobD [Rhodoba... 367 1e-99 ref|YP_001168549.1| cobalamin biosynthesis protein CobD [Rhodoba... 358 6e-97 ref|ZP_08413199.1| cobalamin biosynthesis protein CobD [Rhodobac... 352 6e-95 >ref|NP_769897.1| cobalamin biosynthesis protein [Bradyrhizobium japonicum USDA 110] dbj|BAC48522.1| cobalamin biosynthesis protein [Bradyrhizobium japonicum USDA 110] Length = 307 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 234/291 (80%), Positives = 260/291 (89%) Query: 7 MAVAMAVDALIGWPSALFARIGHPVTWLGRLIHLVDSVWNRASDPPAFRRGAGVAAAISV 66 MAVAMAVDAL+GWP+ LFARIGHPVTWLGRLI +D+ WNR SDPPA RR AG+A A V Sbjct: 1 MAVAMAVDALLGWPAPLFARIGHPVTWLGRLIAAIDTAWNRGSDPPALRRAAGIAGAFLV 60 Query: 67 IALVVALGWAVQFVLASGWVRVVLVGVLAWPLVAVRSLHDHVAAVASPLLSGDIAAARSA 126 IA+ ALGWA+Q +L SGW+++VL GVLAWPLVA+RSLHDHVAAVA+PL +GDIA AR A Sbjct: 61 IAVSAALGWALQSLLPSGWIQIVLAGVLAWPLVALRSLHDHVAAVAAPLQAGDIAGARDA 120 Query: 127 VAQIVGRDPATLDDAGIARATIESLAENASDGIVAPVFWGALFGLPGILGYKAINTLDSM 186 V++IVGRDPA LD+AGIARA IESLAENASDGIVAPVFWGALFGLPGILGYKAINTLDSM Sbjct: 121 VSRIVGRDPAALDEAGIARAAIESLAENASDGIVAPVFWGALFGLPGILGYKAINTLDSM 180 Query: 187 IGHRTERHEAFGWAAARIDDLANLVPARLTGLLFVLLAPNRSQAWSCMLRDARRHRSPNA 246 IGHR+ERHEAFGWAAARIDD+AN +PARLTG LFVLLAP+R++A SCM RDARRHRSPNA Sbjct: 181 IGHRSERHEAFGWAAARIDDVANFIPARLTGFLFVLLAPHRAEALSCMTRDARRHRSPNA 240 Query: 247 GWPEAAMAGALGVRLSGPRIYHGHIADEPWLNEGARDPAGADVLTGLKLYR 297 GWPEAAMAGALGVRLSGPRIYHG I +EPWLNEGARDP AD+ GL +YR Sbjct: 241 GWPEAAMAGALGVRLSGPRIYHGSITNEPWLNEGARDPLAADICEGLTVYR 291 >sp|P0CY56.1|COBD_RHOCA RecName: Full=Cobalamin biosynthesis protein CobD emb|CAA86581.1| bluD [Rhodobacter capsulatus] Length = 314 Score = 367 bits (943), Expect = e-100, Method: Compositional matrix adjust. Identities = 187/300 (62%), Positives = 225/300 (75%), Gaps = 3/300 (1%) Query: 1 VGFAGAMAVAMAVDALIGWPSALFARIGHPVTWLGRLIHLVDSVWNRASDPPAFRRGAGV 60 + FA M VA+ +D +GWP AL+ RIGHPVTW+ RLI ++ WN RR GV Sbjct: 1 MNFAAMMVVAIGIDLALGWPDALYKRIGHPVTWIARLIARLEKGWNFKGR---LRRLRGV 57 Query: 61 AAAISVIALVVALGWAVQFVLASGWVRVVLVGVLAWPLVAVRSLHDHVAAVASPLLSGDI 120 A++VI V + AVQ L +GW V++ G+LAWP VA+RS+HDHVAAVA PL++GD+ Sbjct: 58 LVALAVIGTTVVIALAVQLWLPAGWPGVLIGGILAWPFVALRSMHDHVAAVAKPLIAGDL 117 Query: 121 AAARSAVAQIVGRDPATLDDAGIARATIESLAENASDGIVAPVFWGALFGLPGILGYKAI 180 AR AV+ IVGRDP+ LD G+ARA +ESLAEN+SDGIVAP+FWG + GLPGI GYKAI Sbjct: 118 PGARQAVSMIVGRDPSQLDQPGVARAALESLAENSSDGIVAPLFWGCVAGLPGIAGYKAI 177 Query: 181 NTLDSMIGHRTERHEAFGWAAARIDDLANLVPARLTGLLFVLLAPNRSQAWSCMLRDARR 240 NTLDSMIGHRT+R+E FGWA+ARIDDL NL+PARLTGL F L +P R++A + M RDAR Sbjct: 178 NTLDSMIGHRTDRYEEFGWASARIDDLVNLIPARLTGLFFALASPCRARALAVMARDARS 237 Query: 241 HRSPNAGWPEAAMAGALGVRLSGPRIYHGHIADEPWLNEGARDPAGADVLTGLKLYRYTM 300 HRSPNAGWPEAAMAGAL VRLSGPRIY +A+EPWLN A DP AD+ GL LYR M Sbjct: 238 HRSPNAGWPEAAMAGALAVRLSGPRIYADRVANEPWLNGTAPDPRPADLARGLALYRRAM 297 >ref|YP_003578205.1| cobalamin biosynthesis protein CobD [Rhodobacter capsulatus SB 1003] sp|D5AV16.1|COBD_RHOCB RecName: Full=Cobalamin biosynthesis protein CobD gb|AAC16177.1| CobD protein [Rhodobacter capsulatus SB 1003] gb|ADE85798.1| cobalamin biosynthesis protein CobD [Rhodobacter capsulatus SB 1003] Length = 314 Score = 367 bits (942), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 187/300 (62%), Positives = 225/300 (75%), Gaps = 3/300 (1%) Query: 1 VGFAGAMAVAMAVDALIGWPSALFARIGHPVTWLGRLIHLVDSVWNRASDPPAFRRGAGV 60 + FA M VA+ +D +GWP AL+ RIGHPVTW+G LI ++ WN RR GV Sbjct: 1 MNFAAMMVVAIGIDLALGWPDALYKRIGHPVTWIGALIARLEKGWNFKGR---LRRLRGV 57 Query: 61 AAAISVIALVVALGWAVQFVLASGWVRVVLVGVLAWPLVAVRSLHDHVAAVASPLLSGDI 120 A++VI V + AVQ L +GW V++ G+LAWP VA+RS+HDHVAAVA PL++GD+ Sbjct: 58 LVALAVIGTTVVIALAVQLWLPAGWPGVLIGGILAWPFVALRSMHDHVAAVAKPLIAGDL 117 Query: 121 AAARSAVAQIVGRDPATLDDAGIARATIESLAENASDGIVAPVFWGALFGLPGILGYKAI 180 AR AV+ IVGRDP+ LD G+ARA +ESLAEN+SDGIVAP+FWG + GLPGI GYKAI Sbjct: 118 PGARQAVSMIVGRDPSQLDQPGVARAALESLAENSSDGIVAPLFWGCVAGLPGIAGYKAI 177 Query: 181 NTLDSMIGHRTERHEAFGWAAARIDDLANLVPARLTGLLFVLLAPNRSQAWSCMLRDARR 240 NTLDSMIGHRT+R+E FGWA+ARIDDL NL+PARLTGL F L +P R++A + M RDAR Sbjct: 178 NTLDSMIGHRTDRYEEFGWASARIDDLVNLIPARLTGLFFALASPCRARALAVMARDARS 237 Query: 241 HRSPNAGWPEAAMAGALGVRLSGPRIYHGHIADEPWLNEGARDPAGADVLTGLKLYRYTM 300 HRSPNAGWPEAAMAGAL VRLSGPRIY +A+EPWLN A DP AD+ GL LYR M Sbjct: 238 HRSPNAGWPEAAMAGALAVRLSGPRIYADRVANEPWLNGTAPDPRPADLARGLALYRRAM 297 >ref|YP_001168549.1| cobalamin biosynthesis protein CobD [Rhodobacter sphaeroides ATCC 17025] gb|ABP71244.1| adenosylcobinamide-phosphate synthase [Rhodobacter sphaeroides ATCC 17025] Length = 311 Score = 358 bits (919), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 187/297 (62%), Positives = 220/297 (74%), Gaps = 2/297 (0%) Query: 4 AGAMAVAMAVDALIGWPSALFARIGHPVTWLGRLIHLVDSVWNRASDPPAFRRGAGVAAA 63 AGAM VAMA D +GWP + ARIGHPV W+GRLI +D+ WNR ++P RR AGVAA Sbjct: 4 AGAMLVAMATDTALGWPDRIHARIGHPVVWMGRLITALDARWNRGTEPQ--RRRAGVAAL 61 Query: 64 ISVIALVVALGWAVQFVLASGWVRVVLVGVLAWPLVAVRSLHDHVAAVASPLLSGDIAAA 123 + VQ +L G + VL G+LAWPLVA+RS+H+HV AVA PL G++ A Sbjct: 62 GVTVLAAALPAALVQTLLPGGLMGAVLTGLLAWPLVALRSMHEHVEAVADPLERGNLPEA 121 Query: 124 RSAVAQIVGRDPATLDDAGIARATIESLAENASDGIVAPVFWGALFGLPGILGYKAINTL 183 R AV+ IVGRDPA LD+AG+ARA +ESLAEN+SDGIVAP+FWG LFGLPGI YKAINTL Sbjct: 122 RRAVSMIVGRDPAQLDEAGVARAALESLAENSSDGIVAPLFWGLLFGLPGIAAYKAINTL 181 Query: 184 DSMIGHRTERHEAFGWAAARIDDLANLVPARLTGLLFVLLAPNRSQAWSCMLRDARRHRS 243 DSMIGHRT RHEAFGWA+AR DD NL+PARLTG+LF L++ + A + M RDAR HRS Sbjct: 182 DSMIGHRTPRHEAFGWASARTDDWVNLIPARLTGVLFALVSRSPRTALATMRRDARAHRS 241 Query: 244 PNAGWPEAAMAGALGVRLSGPRIYHGHIADEPWLNEGARDPAGADVLTGLKLYRYTM 300 PNAGWPEAAMAGALGVRLSGPR Y ++ EPWLN G DP A++ GL LYR M Sbjct: 242 PNAGWPEAAMAGALGVRLSGPRNYGDRVSAEPWLNAGDPDPGAAELRLGLALYRRGM 298 >ref|ZP_08413199.1| cobalamin biosynthesis protein CobD [Rhodobacter sphaeroides WS8N] gb|EGJ21904.1| cobalamin biosynthesis protein CobD [Rhodobacter sphaeroides WS8N] Length = 311 Score = 352 bits (902), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 188/297 (63%), Positives = 217/297 (73%), Gaps = 2/297 (0%) Query: 4 AGAMAVAMAVDALIGWPSALFARIGHPVTWLGRLIHLVDSVWNRASDPPAFRRGAGVAAA 63 AG M VAMA D +GWP L ARIGHPV W+GR+I +D WNR SD A RR AGVAA Sbjct: 4 AGTMLVAMATDVALGWPDRLHARIGHPVVWIGRIISALDGRWNRGSD--AERRRAGVAAL 61 Query: 64 ISVIALVVALGWAVQFVLASGWVRVVLVGVLAWPLVAVRSLHDHVAAVASPLLSGDIAAA 123 + + +Q +L G + VL G+LAWPLVA+RS+H+HV AVA PL +GD+ A Sbjct: 62 LVTVLAAALPAALLQSLLPGGLLGAVLTGLLAWPLVALRSMHEHVEAVAVPLDAGDLPGA 121 Query: 124 RSAVAQIVGRDPATLDDAGIARATIESLAENASDGIVAPVFWGALFGLPGILGYKAINTL 183 R AV+ IVGRDPA LD AG+ARA +ESLAEN+SDGIVAP+FWG L GLPGI YKAINTL Sbjct: 122 RQAVSMIVGRDPAQLDGAGVARAALESLAENSSDGIVAPLFWGVLLGLPGIAAYKAINTL 181 Query: 184 DSMIGHRTERHEAFGWAAARIDDLANLVPARLTGLLFVLLAPNRSQAWSCMLRDARRHRS 243 DSMIGHRT RHEAFGWA+AR DD NL+PARLTG+LF + +A + M RDAR HRS Sbjct: 182 DSMIGHRTPRHEAFGWASARTDDWVNLIPARLTGVLFAFASGRPRRALAVMRRDARAHRS 241 Query: 244 PNAGWPEAAMAGALGVRLSGPRIYHGHIADEPWLNEGARDPAGADVLTGLKLYRYTM 300 PNAGWPEAAMAGALGVRLSGPRIY ++ EPWLN GA DP D+ GL LYR M Sbjct: 242 PNAGWPEAAMAGALGVRLSGPRIYGDRVSAEPWLNAGAPDPGPTDLRQGLALYRRGM 298