BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0042.p (235 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002290143.1| hypothetical protein OCAR_7174 [Oligotropha ... 96 4e-18 ref|ZP_01046298.1| hypothetical protein NB311A_05443 [Nitrobacte... 96 5e-18 ref|YP_001242665.1| hypothetical protein BBta_6872 [Bradyrhizobi... 91 1e-16 ref|YP_571354.1| hypothetical protein RPD_4236 [Rhodopseudomonas... 90 2e-16 ref|YP_004535154.1| hypothetical protein PP1Y_AT25452 [Novosphin... 88 1e-15 >ref|YP_002290143.1| hypothetical protein OCAR_7174 [Oligotropha carboxidovorans OM5] ref|YP_004631898.1| hypothetical protein OCA5_c09350 [Oligotropha carboxidovorans OM5] gb|ACI94278.1| putative membrane protein [Oligotropha carboxidovorans OM5] gb|AEI02081.1| putative transmembrane protein [Oligotropha carboxidovorans OM4] gb|AEI05657.1| putative transmembrane protein [Oligotropha carboxidovorans OM5] Length = 413 Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 71/201 (35%), Positives = 102/201 (50%), Gaps = 2/201 (0%) Query: 12 YKPQIALLAPLVLILARRWRALAAAAATTLVLVLAATALLGIDPWIKFVAVLPEASAWSL 71 YKPQ L P L+ A RWR +A A T L+ L G + W F+A + L Sbjct: 201 YKPQFGLAIPFALLAAGRWRTIATACITLASLIGITMLLFGTEAWSAFLASAGVSRKLLL 260 Query: 72 GGGP-GFEKFASPYAAVRLAGGSSGAAWLVQVTTAAIAIAVLILVLRKRPGGAAEIALMV 130 G GFEK S +A VRL GG + A+ VQ + I L+ V R R A + AL+V Sbjct: 261 ESGAVGFEKLQSAFAVVRLWGGETPLAYAVQALVSGATIVSLVWVWRSRCDAATKAALLV 320 Query: 131 AMTGLCVPSLGNYEVVILAIPGAWLIAQALAQGWLPYERIALAALYLTP-FAMVPAGANG 189 + + LC P + +Y+++ LA+ A+L A+ L +G+ PYE LAAL++ P AG Sbjct: 321 SGSLLCSPHILDYDLIALAVAIAFLAARGLREGFRPYEISLLAALWIVPVLTRTVAGTLA 380 Query: 190 LQLAPIAAATVAILVVRRIRH 210 L L +A T ++ + R Sbjct: 381 LPLGFLATLTFHFTILLQARR 401 >ref|ZP_01046298.1| hypothetical protein NB311A_05443 [Nitrobacter sp. Nb-311A] gb|EAQ35835.1| hypothetical protein NB311A_05443 [Nitrobacter sp. Nb-311A] Length = 418 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 78/214 (36%), Positives = 114/214 (53%), Gaps = 8/214 (3%) Query: 1 VIAGVLLGCFSYKPQIALLAPLVLILARRWRALAAAAATTLVLVLAATALLGIDPWIKFV 60 ++AG+L G +YKPQ L+ P+VL+ A +WR++ AAA T L+L A+ G D W F Sbjct: 190 ILAGILFGLLAYKPQFGLVIPVVLLAAGQWRSIGAAAMTVAALILGTMAVFGPDIWTAFA 249 Query: 61 AVLPEASAWSLGGGP-GFEKFASPYAAVRLAGGSSGAAWLVQVTTAAIAIAVLILVLRKR 119 A + L G GFEK S +AAVR+ GGS A+ VQ +A+ I + V R Sbjct: 250 ASTELSRKMLLQDGDVGFEKLQSVFAAVRMWGGSVSLAYAVQGVLSAVVIGSVAQVWRSS 309 Query: 120 PGGAAEIALMVAMTGLCVPSLGNYEVVILAIPGAWLIAQALAQ-GWLPYERIALAALYLT 178 + A + T L P + +Y+++IL P +A A+A+ G YE ALAA++L Sbjct: 310 RDNDIKAAALSVATALASPHVLDYDLMILG-PAIAFMAVAIAKHGARRYEITALAAVWLA 368 Query: 179 PFAMVPAG---ANGLQLAPIAAATVAILVVRRIR 209 P +V G A G+ LA IA + ++ R R Sbjct: 369 P--LVTRGVSSATGIPLALIAMIVLYGIIQYRDR 400 >ref|YP_001242665.1| hypothetical protein BBta_6872 [Bradyrhizobium sp. BTAi1] gb|ABQ38759.1| putative membrane protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 408 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 69/174 (39%), Positives = 98/174 (56%), Gaps = 3/174 (1%) Query: 1 VIAGVLLGCFSYKPQIALLAPLVLILARRWRALAAAAATTLVLVLAATALLGIDPWIKFV 60 V+AG+ LG +YKPQ LL P++LI +RW A +A+AT LVL LA+ G++ W FV Sbjct: 185 VLAGICLGLLTYKPQYGLLFPILLIATQRWTAFVSASATALVLALASFLAFGLESWQAFV 244 Query: 61 AVLPEAS-AWSLGGGPGFEKFASPYAAVRLAGGSSGAAWLVQ-VTTAAIAIAVLILVLRK 118 +P S A+ G + K S ++ VR GGS AW +Q V TAAIA+ VL+++ R Sbjct: 245 HWMPAFSQAFLTEGKATWWKLQSLFSLVRYLGGSETLAWALQWVLTAAIAM-VLVVMWRS 303 Query: 119 RPGGAAEIALMVAMTGLCVPSLGNYEVVILAIPGAWLIAQALAQGWLPYERIAL 172 A + A + L P L Y++++ AI AWL+ L G+ YE AL Sbjct: 304 PVRYAVKAAALAVGLLLTTPYLFMYDMMVQAIAVAWLVRMGLHDGFRRYELPAL 357 >ref|YP_571354.1| hypothetical protein RPD_4236 [Rhodopseudomonas palustris BisB5] gb|ABE41453.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 421 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 76/211 (36%), Positives = 111/211 (52%), Gaps = 6/211 (2%) Query: 1 VIAGVLLGCFSYKPQIALLAPLVLILARRWRALAAAAATTLVLVLAATALLGIDPWIKFV 60 ++AGVL+G SYKPQ ++ PLVLI RWRA +AA T L L LA T G + W F Sbjct: 194 MVAGVLIGLLSYKPQFGVMIPLVLIATWRWRAFVSAALTVLALALATTFAFGFEVWRAFF 253 Query: 61 AVLPEASAWSLG-GGPGFEKFASPYAAVRLAGGSSGAAWLVQVTTAAIAIAVLILVLRKR 119 +P L GG G+ K S +A VR+ GG A+ +Q A L+ + R R Sbjct: 254 EAMPFTQKVVLEQGGTGWHKIQSVFAWVRMWGGGVQLAYAIQGAVMVTLAAALVWLWRSR 313 Query: 120 PGGAAEIALMVAMTGLCVPSLGNYEVVILAIPGAWLIAQALAQGWLPYERIALAALYLTP 179 + + A ++ + L P +Y+ V LA A+L A LA+G+ P+E+ ALA L+L P Sbjct: 314 AAYSLKAAALIVASILATPYSLDYDFVALAPAIAFLAAHGLARGFAPWEKTALALLWLMP 373 Query: 180 FAMVPAGANGLQLAPIAAAT---VAILVVRR 207 +V G L P+ + V +L+++R Sbjct: 374 --LVARGLAEQTLIPLGVPSMLLVFVLIIKR 402 >ref|YP_004535154.1| hypothetical protein PP1Y_AT25452 [Novosphingobium sp. PP1Y] emb|CCA93336.1| conserved hypothetical protein [Novosphingobium sp. PP1Y] Length = 404 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 66/188 (35%), Positives = 99/188 (52%) Query: 1 VIAGVLLGCFSYKPQIALLAPLVLILARRWRALAAAAATTLVLVLAATALLGIDPWIKFV 60 V+AG+ G + KPQ +L PLVL+L R W+ +A+AA T + L L + G D + + Sbjct: 182 VLAGIFFGLATIKPQFGILVPLVLLLTREWKVIASAAVTAIALALLSALAFGADTFAGWY 241 Query: 61 AVLPEASAWSLGGGPGFEKFASPYAAVRLAGGSSGAAWLVQVTTAAIAIAVLILVLRKRP 120 A A + G GF K S +A RL G + G A+ Q I +LI R RP Sbjct: 242 AASGRAQVAMVDGAVGFGKMMSVFAGARLIGLTPGLAYGAQAAVGLATIILLIRAFRARP 301 Query: 121 GGAAEIALMVAMTGLCVPSLGNYEVVILAIPGAWLIAQALAQGWLPYERIALAALYLTPF 180 A ALM+A L P + +Y++V+LA P WL ++ +A G+ +E++ALA ++ P Sbjct: 302 YSPALGALMLAAAPLVTPFVLDYDMVLLAFPLLWLTSRGIADGFRDWEKLALALAFIAPV 361 Query: 181 AMVPAGAN 188 P G + Sbjct: 362 FARPIGLH 369