BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0038.p (357 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001203926.1| multiple sugar-binding periplasmic receptor ... 616 e-174 ref|YP_001238230.1| multiple sugar-binding periplasmic receptor ... 615 e-174 ref|NP_769848.1| ABC transporter sugar-binding protein [Bradyrhi... 600 e-170 ref|YP_003692069.1| periplasmic protein/LacI transcriptional reg... 575 e-162 ref|NP_700104.1| sugar ABC transporter periplasmic sugar-binding... 557 e-157 >ref|YP_001203926.1| multiple sugar-binding periplasmic receptor chvE [Bradyrhizobium sp. ORS 278] emb|CAL75689.1| Multiple sugar-binding periplasmic receptor chvE precursor [Bradyrhizobium sp. ORS 278] Length = 356 Score = 616 bits (1588), Expect = e-174, Method: Compositional matrix adjust. Identities = 302/329 (91%), Positives = 318/329 (96%) Query: 28 QSKPTIGIAMPTKSSARWIDDGNNMVKVLKERGYGTDLQYAEDDIPNQLSQVENMVTKGA 87 QSK T+GIAMPTKSSARWIDDGNN+VKVLK+RGY TDLQYAEDDIPNQLSQ+ENMVTKGA Sbjct: 27 QSKGTVGIAMPTKSSARWIDDGNNIVKVLKDRGYATDLQYAEDDIPNQLSQIENMVTKGA 86 Query: 88 KVLVIAAIDGTTLSDVLKQAKAQGITVIAYDRLIRDTPNVDYYATFDNFQVGVLQAQSIE 147 KVLVIAAIDGTTLSDVLKQAKA+GITVIAYDRLIRDTPN+DYYATFDNFQVGVLQAQSI Sbjct: 87 KVLVIAAIDGTTLSDVLKQAKAKGITVIAYDRLIRDTPNLDYYATFDNFQVGVLQAQSIV 146 Query: 148 NALGLKEGKGPFNIELFGGSPDDNNAYFFYDGAMSVLKPYIDSGKLVVGSGQTGMNKVAT 207 + LGLK+GKGPFNIELFGGSPDDNNAYFFY+GAMSVL+PYIDSGKLVV SGQTGM+KVAT Sbjct: 147 DKLGLKDGKGPFNIELFGGSPDDNNAYFFYNGAMSVLQPYIDSGKLVVASGQTGMDKVAT 206 Query: 208 LRWDGATAQARMDNLLSAFYGKKRVDAVLSPYDGLSIGIISSLKSVGYGSKDQPMPYISG 267 LRWDGATAQARMDNLLSAFYGKKRVDAVLSPYDGLSIGIISSLK VGYGS DQPMP ISG Sbjct: 207 LRWDGATAQARMDNLLSAFYGKKRVDAVLSPYDGLSIGIISSLKGVGYGSADQPMPVISG 266 Query: 268 QDAEVPSIKAMLRGEQYSTIFKDTRDLAKVTADMVDAVLSKKEVSVNDTKTYNNGVKVVP 327 QDAEVPSIKAMLRG+QYSTIFKDTRDLAKVTADMVDA L+ KEV VNDTKTYNNGVKVVP Sbjct: 267 QDAEVPSIKAMLRGDQYSTIFKDTRDLAKVTADMVDASLAGKEVPVNDTKTYNNGVKVVP 326 Query: 328 SYLLKPVVVDKTNWEKVLIDSGYYKRSQF 356 SYLLKPVVVDK+NWEKVLIDSGYYK++QF Sbjct: 327 SYLLKPVVVDKSNWEKVLIDSGYYKKAQF 355 >ref|YP_001238230.1| multiple sugar-binding periplasmic receptor chvE [Bradyrhizobium sp. BTAi1] gb|ABQ34324.1| multiple monosaccharide-binding protein [Bradyrhizobium sp. BTAi1] Length = 356 Score = 615 bits (1587), Expect = e-174, Method: Compositional matrix adjust. Identities = 299/331 (90%), Positives = 320/331 (96%) Query: 26 MAQSKPTIGIAMPTKSSARWIDDGNNMVKVLKERGYGTDLQYAEDDIPNQLSQVENMVTK 85 MAQSK T+GIAMPTKSSARWIDDGNN+VKVLK+RGY TDLQYAEDDIPNQLSQ+ENMVTK Sbjct: 25 MAQSKGTVGIAMPTKSSARWIDDGNNIVKVLKDRGYATDLQYAEDDIPNQLSQIENMVTK 84 Query: 86 GAKVLVIAAIDGTTLSDVLKQAKAQGITVIAYDRLIRDTPNVDYYATFDNFQVGVLQAQS 145 GAKVLVIAAIDGTTLSDVLKQAKA+GITVIAYDRLIRDTPN+DYYATFDNFQVGVLQAQS Sbjct: 85 GAKVLVIAAIDGTTLSDVLKQAKAKGITVIAYDRLIRDTPNLDYYATFDNFQVGVLQAQS 144 Query: 146 IENALGLKEGKGPFNIELFGGSPDDNNAYFFYDGAMSVLKPYIDSGKLVVGSGQTGMNKV 205 I + LGLK+GKGPFNIELFGGSPDDNNAYFFY+GAMSVL+PY+DSGKLV+GSGQ GM+KV Sbjct: 145 IVDKLGLKDGKGPFNIELFGGSPDDNNAYFFYNGAMSVLQPYLDSGKLVIGSGQKGMDKV 204 Query: 206 ATLRWDGATAQARMDNLLSAFYGKKRVDAVLSPYDGLSIGIISSLKSVGYGSKDQPMPYI 265 ATLRWDGATAQARMDNLLSAFYGKKRVDAVLSPYDGLSIGIISSLK VGYGS DQPMP I Sbjct: 205 ATLRWDGATAQARMDNLLSAFYGKKRVDAVLSPYDGLSIGIISSLKGVGYGSADQPMPVI 264 Query: 266 SGQDAEVPSIKAMLRGEQYSTIFKDTRDLAKVTADMVDAVLSKKEVSVNDTKTYNNGVKV 325 SGQDAEVPS+KA+LRG+QYSTIFKDTRDLAKVTADMVDA L+ KEV VNDTKTYNNGVKV Sbjct: 265 SGQDAEVPSVKAILRGDQYSTIFKDTRDLAKVTADMVDAALAGKEVPVNDTKTYNNGVKV 324 Query: 326 VPSYLLKPVVVDKTNWEKVLIDSGYYKRSQF 356 VPSYLLKPVVVDK+NWEKVL+DSGYYK++QF Sbjct: 325 VPSYLLKPVVVDKSNWEKVLVDSGYYKKAQF 355 >ref|NP_769848.1| ABC transporter sugar-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC48473.1| ABC transporter sugar-binding protein [Bradyrhizobium japonicum USDA 110] Length = 357 Score = 600 bits (1548), Expect = e-170, Method: Compositional matrix adjust. Identities = 306/356 (85%), Positives = 324/356 (91%) Query: 1 MFKLKTSLFALALAGLAATVSDRDAMAQSKPTIGIAMPTKSSARWIDDGNNMVKVLKERG 60 M KLKT+ ALALAG A + A AQ K T+GIAMPTKSSARWIDDGNNMVKVLKERG Sbjct: 1 MLKLKTTFLALALAGAATMAAGVTASAQDKATVGIAMPTKSSARWIDDGNNMVKVLKERG 60 Query: 61 YGTDLQYAEDDIPNQLSQVENMVTKGAKVLVIAAIDGTTLSDVLKQAKAQGITVIAYDRL 120 Y TDLQYAEDDIPNQLSQVENMVTKGAK LVIAAIDGTTLSDVLKQAKA+GITVIAYDRL Sbjct: 61 YNTDLQYAEDDIPNQLSQVENMVTKGAKALVIAAIDGTTLSDVLKQAKAKGITVIAYDRL 120 Query: 121 IRDTPNVDYYATFDNFQVGVLQAQSIENALGLKEGKGPFNIELFGGSPDDNNAYFFYDGA 180 IR TPNVDYYATFDNFQVGVLQA+S+ LGLK+GKGPFNIELFGGSPDDNNAYFFY+GA Sbjct: 121 IRGTPNVDYYATFDNFQVGVLQAESLVQGLGLKDGKGPFNIELFGGSPDDNNAYFFYNGA 180 Query: 181 MSVLKPYIDSGKLVVGSGQTGMNKVATLRWDGATAQARMDNLLSAFYGKKRVDAVLSPYD 240 MSVLKPYIDSGKLVV SGQ GM+KVATLRWDGATAQARMDNLLSA+YG K+V+AVLSPYD Sbjct: 181 MSVLKPYIDSGKLVVVSGQMGMDKVATLRWDGATAQARMDNLLSAYYGNKKVNAVLSPYD 240 Query: 241 GLSIGIISSLKSVGYGSKDQPMPYISGQDAEVPSIKAMLRGEQYSTIFKDTRDLAKVTAD 300 GLSIGIISSLK VGYGS DQPMP ISGQDAEVPSIKAMLRG+QYSTIFKDTRDLAKVTAD Sbjct: 241 GLSIGIISSLKGVGYGSADQPMPVISGQDAEVPSIKAMLRGDQYSTIFKDTRDLAKVTAD 300 Query: 301 MVDAVLSKKEVSVNDTKTYNNGVKVVPSYLLKPVVVDKTNWEKVLIDSGYYKRSQF 356 MVDA L+ K+V+VNDT TY NGVK VPSYLLKPVVV K NWEKVL+DSGYYK+SQF Sbjct: 301 MVDAALAGKQVTVNDTNTYENGVKKVPSYLLKPVVVYKDNWEKVLVDSGYYKKSQF 356 >ref|YP_003692069.1| periplasmic protein/LacI transcriptional regulator [Starkeya novella DSM 506] gb|ADH87450.1| periplasmic binding protein/LacI transcriptional regulator [Starkeya novella DSM 506] Length = 356 Score = 575 bits (1481), Expect = e-162, Method: Compositional matrix adjust. Identities = 288/357 (80%), Positives = 312/357 (87%), Gaps = 1/357 (0%) Query: 1 MFKLKTSLFALALAGLAATVSDRDAMAQSKPTIGIAMPTKSSARWIDDGNNMVKVLKERG 60 M +L T+L A AL LA + + A AQ K T+GIAMPTKSSARWI DG+NMVKVLKERG Sbjct: 1 MKRLTTTLSAFALGALALSFA-VPASAQDKGTVGIAMPTKSSARWIADGDNMVKVLKERG 59 Query: 61 YGTDLQYAEDDIPNQLSQVENMVTKGAKVLVIAAIDGTTLSDVLKQAKAQGITVIAYDRL 120 Y TDLQYAEDDIPNQLSQ+ENMVTKGAKVLVIA+IDGTTLSDVLKQA+AQGI VIAYDRL Sbjct: 60 YDTDLQYAEDDIPNQLSQIENMVTKGAKVLVIASIDGTTLSDVLKQAQAQGIKVIAYDRL 119 Query: 121 IRDTPNVDYYATFDNFQVGVLQAQSIENALGLKEGKGPFNIELFGGSPDDNNAYFFYDGA 180 IRDTPNVDYYATFDNFQVGVLQAQS+ LG E KGPFNIELFGGSPDDNNAYFFYDGA Sbjct: 120 IRDTPNVDYYATFDNFQVGVLQAQSLLKGLGYPENKGPFNIELFGGSPDDNNAYFFYDGA 179 Query: 181 MSVLKPYIDSGKLVVGSGQTGMNKVATLRWDGATAQARMDNLLSAFYGKKRVDAVLSPYD 240 MSVLKP ID+G L V SGQ GM+KV+TLRWDGATAQARMDNLLSA+Y KR+D VLSPYD Sbjct: 180 MSVLKPLIDNGTLKVASGQMGMDKVSTLRWDGATAQARMDNLLSAYYNDKRIDGVLSPYD 239 Query: 241 GLSIGIISSLKSVGYGSKDQPMPYISGQDAEVPSIKAMLRGEQYSTIFKDTRDLAKVTAD 300 GLSIGI+SSLK VGYGS MP ++GQDAEVPS+K++L GEQYSTIFKDTRDLAKVTAD Sbjct: 240 GLSIGILSSLKGVGYGSGGMKMPVVTGQDAEVPSMKSILAGEQYSTIFKDTRDLAKVTAD 299 Query: 301 MVDAVLSKKEVSVNDTKTYNNGVKVVPSYLLKPVVVDKTNWEKVLIDSGYYKRSQFD 357 MVDA LS KEV+VNDTKTYNNGVKVVPSYLLKPVVVDK NWEKVL+ SGYYK Q + Sbjct: 300 MVDASLSGKEVTVNDTKTYNNGVKVVPSYLLKPVVVDKGNWEKVLVGSGYYKADQIN 356 >ref|NP_700104.1| sugar ABC transporter periplasmic sugar-binding protein [Brucella suis 1330] ref|YP_001257858.1| sugar ABC transporter periplasmic sugar-binding protein [Brucella ovis ATCC 25840] ref|YP_001594875.1| multiple sugar-binding periplasmic receptor chvE precursor [Brucella canis ATCC 23365] ref|YP_001622708.1| hypothetical protein BSUIS_B0930 [Brucella suis ATCC 23445] ref|ZP_03787427.1| Multiple sugar-binding periplasmic receptor chvE precursor [Brucella ceti str. Cudo] ref|YP_003105707.1| sugar ABC transporter periplasmic sugar-binding protein [Brucella microti CCM 4915] ref|ZP_05838278.1| sugar ABC transporter [Brucella suis bv. 4 str. 40] ref|ZP_05931809.1| sugar ABC transporter [Brucella ceti M13/05/1] ref|ZP_05935032.1| sugar ABC transporter [Brucella ceti B1/94] ref|ZP_05957598.1| sugar ABC transporter [Brucella pinnipedialis B2/94] ref|ZP_05959600.1| sugar ABC transporter [Brucella ceti M644/93/1] ref|ZP_05994340.1| sugar ABC transporter [Brucella suis bv. 5 str. 513] ref|ZP_05997597.1| sugar ABC transporter [Brucella suis bv. 3 str. 686] ref|ZP_06000840.1| sugar ABC transporter [Brucella sp. F5/99] ref|ZP_06098757.1| sugar ABC transporter [Brucella pinnipedialis M292/94/1] ref|ZP_06108452.1| sugar ABC transporter [Brucella ceti M490/95/1] ref|ZP_06794561.1| multiple sugar-binding periplasmic receptor chvE [Brucella sp. NVSL 07-0026] ref|ZP_07474044.1| sugar ABC transporter, periplasmic sugar-binding protein [Brucella sp. BO2] ref|YP_004758173.1| sugar ABC transporter periplasmic sugar-binding protein [Brucella pinnipedialis B2/94] gb|AAN34109.1| sugar ABC transporter, periplasmic sugar-binding protein [Brucella suis 1330] gb|ABQ62927.1| sugar ABC transporter, periplasmic sugar-binding protein [Brucella ovis ATCC 25840] gb|ABX64104.1| Multiple sugar-binding periplasmic receptor chvE precursor [Brucella canis ATCC 23365] gb|ABY39886.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gb|EEH12939.1| Multiple sugar-binding periplasmic receptor chvE precursor [Brucella ceti str. Cudo] gb|ACU50045.1| sugar ABC transporter, periplasmic sugar-binding protein [Brucella microti CCM 4915] gb|EEW89555.1| sugar ABC transporter [Brucella suis bv. 4 str. 40] gb|EEX85988.1| sugar ABC transporter [Brucella ceti B1/94] gb|EEX89185.1| sugar ABC transporter [Brucella ceti M13/05/1] gb|EEX96589.1| sugar ABC transporter [Brucella ceti M644/93/1] gb|EEY01121.1| sugar ABC transporter [Brucella pinnipedialis B2/94] gb|EEY25111.1| sugar ABC transporter [Brucella sp. F5/99] gb|EEY28310.1| sugar ABC transporter [Brucella suis bv. 5 str. 513] gb|EEY31567.1| sugar ABC transporter [Brucella suis bv. 3 str. 686] gb|EEZ06353.1| sugar ABC transporter [Brucella ceti M490/95/1] gb|EEZ28658.1| sugar ABC transporter [Brucella pinnipedialis M292/94/1] gb|EFG36544.1| multiple sugar-binding periplasmic receptor chvE [Brucella sp. NVSL 07-0026] gb|EFM59974.1| sugar ABC transporter, periplasmic sugar-binding protein [Brucella sp. BO2] gb|AEK56405.1| sugar ABC transporter, periplasmic sugar-binding protein [Brucella pinnipedialis B2/94] gb|AEM20385.1| sugar ABC transporter, periplasmic sugar-binding protein [Brucella suis 1330] Length = 353 Score = 557 bits (1436), Expect = e-157, Method: Compositional matrix adjust. Identities = 271/353 (76%), Positives = 310/353 (87%), Gaps = 3/353 (0%) Query: 4 LKTSLFALALAGLAATVSDRDAMAQSKPTIGIAMPTKSSARWIDDGNNMVKVLKERGYGT 63 +K+ A+A+A A T A A+ K + +AMPTKSSARWI DG+NMVKVLKERGY T Sbjct: 3 MKSLTLAVAMAAFAFTGM---AHAEDKGLVAVAMPTKSSARWIADGDNMVKVLKERGYQT 59 Query: 64 DLQYAEDDIPNQLSQVENMVTKGAKVLVIAAIDGTTLSDVLKQAKAQGITVIAYDRLIRD 123 DLQYAEDD+PNQL+Q+ENMVTKGAKVLV+A+IDGTTLSDVL +A GI VIAYDRLIR+ Sbjct: 60 DLQYAEDDVPNQLAQIENMVTKGAKVLVVASIDGTTLSDVLAKAHDAGIKVIAYDRLIRN 119 Query: 124 TPNVDYYATFDNFQVGVLQAQSIENALGLKEGKGPFNIELFGGSPDDNNAYFFYDGAMSV 183 TPNVDYYATFDNFQVGVLQAQSIE AL LK GPFNIELFGGSPDDNNAYFFY+GAMSV Sbjct: 120 TPNVDYYATFDNFQVGVLQAQSIEKALDLKNKPGPFNIELFGGSPDDNNAYFFYNGAMSV 179 Query: 184 LKPYIDSGKLVVGSGQTGMNKVATLRWDGATAQARMDNLLSAFYGKKRVDAVLSPYDGLS 243 L+PYIDSGKLVVGSGQTGM+KVATLRWDGATAQARMD++LSA+Y K++DAVLSPYDG+S Sbjct: 180 LQPYIDSGKLVVGSGQTGMDKVATLRWDGATAQARMDSILSAYYSDKKLDAVLSPYDGIS 239 Query: 244 IGIISSLKSVGYGSKDQPMPYISGQDAEVPSIKAMLRGEQYSTIFKDTRDLAKVTADMVD 303 IGI+SSLK VGYGS D PMP +SGQDAE+PS+K++L GEQ STIFKDTR+LAKVT DMVD Sbjct: 240 IGILSSLKGVGYGSGDMPMPVVSGQDAEIPSVKSILAGEQNSTIFKDTRELAKVTVDMVD 299 Query: 304 AVLSKKEVSVNDTKTYNNGVKVVPSYLLKPVVVDKTNWEKVLIDSGYYKRSQF 356 A+++ KE VNDTKTYNNGVKVVPSYLLKPV+VDK+NW++VL+DSGYYK Q Sbjct: 300 ALMTGKEPEVNDTKTYNNGVKVVPSYLLKPVIVDKSNWKQVLVDSGYYKEDQI 352