BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0032.p (299 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_882813.1| LysR family transcriptional regulator [Bordetel... 249 5e-64 ref|NP_879299.1| LysR family transcriptional regulator [Bordetel... 246 4e-63 gb|EGP43671.1| LysR family transcriptional regulator [Achromobac... 206 3e-51 ref|NP_744204.1| LysR family transcriptional regulator [Pseudomo... 188 7e-46 ref|YP_001667814.1| LysR family transcriptional regulator [Pseud... 188 9e-46 >ref|NP_882813.1| LysR family transcriptional regulator [Bordetella parapertussis 12822] ref|NP_887012.1| LysR family transcriptional regulator [Bordetella bronchiseptica RB50] emb|CAE36045.1| LysR-family transcriptional regulator [Bordetella parapertussis] emb|CAE30961.1| LysR-family transcriptional regulator [Bordetella bronchiseptica RB50] Length = 320 Score = 249 bits (635), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 130/295 (44%), Positives = 188/295 (63%), Gaps = 1/295 (0%) Query: 1 MSQINFKLLHMFIAVAENKSFRQASEQLNRSQSAVSMQIKLLEDQVGAALFHRTTRRVEL 60 + IN KLLH F+ VAE+ SFRQA+E +RSQ+AV+ QIK LE Q+G LFHRTTR+V L Sbjct: 9 LPNINLKLLHTFMLVAEHCSFRQAAELSHRSQAAVTGQIKQLEAQLGVDLFHRTTRQVRL 68 Query: 61 TAEGLQLLTHARRALGEWENGLREIREVIDIQRGTLSLACVPTIAATILPQALHAFQASY 120 TAEG QLL ARRA+ E ENGLR+I+E +D++RG + L+C T+++T L L AF+ Y Sbjct: 69 TAEGAQLLESARRAVHEMENGLRQIQETVDLKRGRIFLSCSTTVSSTRLAPILAAFERDY 128 Query: 121 PGININLRELAAEDMLDCLRRREADFGIGPETDGSTEFQFAPLFNDPIYALATKAFPFRK 180 PG+ + +REL + DM + +RR EADFGIGP + EF F P+ + +YA+ + Sbjct: 129 PGVEVFVRELTSGDMFETVRREEADFGIGPIME-LPEFDFEPILTENLYAVVPRNLFPDT 187 Query: 181 RSAVDLTELSAYPILLNSKSAALRSMLERALATRNLQMKIKFEVEHSYTLAALAGAGLGV 240 + L L++ P+LL + ALR++++ +R L + KF+ + TL ++A AGLG Sbjct: 188 AEQITLARLASMPLLLLNPGTALRALIDDTARSRGLTINTKFQFSQAQTLISMATAGLGA 247 Query: 241 GILPKVALPRPIRKTMQALPIVNPTLERTVCIVSLRGQSFSPAAGALTSVIHKFL 295 +LP + LP K +Q LPI +P + R V IV LR + +PAA L ++ + Sbjct: 248 AVLPAMVLPAKPHKDVQVLPIASPRMTRDVAIVRLRHRKLTPAAARLAQLVRDLI 302 >ref|NP_879299.1| LysR family transcriptional regulator [Bordetella pertussis Tohama I] emb|CAE44768.1| LysR-family transcriptional regulator [Bordetella pertussis Tohama I] gb|AEE65922.1| LysR family transcriptional regulator [Bordetella pertussis CS] Length = 320 Score = 246 bits (627), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 129/295 (43%), Positives = 187/295 (63%), Gaps = 1/295 (0%) Query: 1 MSQINFKLLHMFIAVAENKSFRQASEQLNRSQSAVSMQIKLLEDQVGAALFHRTTRRVEL 60 + IN KLLH F+ VAE+ SFRQA+E +RSQ+AV+ QIK LE Q+G LFHRTTR+V L Sbjct: 9 LPNINLKLLHTFMLVAEHCSFRQAAELSHRSQAAVTGQIKQLEAQLGVDLFHRTTRQVRL 68 Query: 61 TAEGLQLLTHARRALGEWENGLREIREVIDIQRGTLSLACVPTIAATILPQALHAFQASY 120 TAEG QLL ARRA E ENGLR+I+E +D++RG + L+C T+++T L L AF+ Y Sbjct: 69 TAEGAQLLESARRAAHEMENGLRQIQETVDLKRGRIFLSCSTTVSSTRLAPILAAFERDY 128 Query: 121 PGININLRELAAEDMLDCLRRREADFGIGPETDGSTEFQFAPLFNDPIYALATKAFPFRK 180 PG+ + +REL + DM + +RR +ADFGIGP + EF F P+ + +YA+ + Sbjct: 129 PGVEVFVRELTSGDMFETVRREQADFGIGPIME-LPEFDFEPILTENLYAVVPRNLFPDT 187 Query: 181 RSAVDLTELSAYPILLNSKSAALRSMLERALATRNLQMKIKFEVEHSYTLAALAGAGLGV 240 + L L++ P+LL + ALR++++ +R L + KF+ + TL ++A AGLG Sbjct: 188 AEQITLARLASMPLLLLNPGTALRALIDDTARSRGLTINAKFQFSQAQTLISMATAGLGA 247 Query: 241 GILPKVALPRPIRKTMQALPIVNPTLERTVCIVSLRGQSFSPAAGALTSVIHKFL 295 +LP + LP K +Q LPI +P + R V IV LR + +PAA L ++ + Sbjct: 248 AVLPAMVLPAKPHKDVQVLPIASPRMTRDVAIVRLRHRKLTPAAARLAQLVRDLI 302 >gb|EGP43671.1| LysR family transcriptional regulator [Achromobacter xylosoxidans AXX-A] Length = 300 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 125/292 (42%), Positives = 185/292 (63%), Gaps = 2/292 (0%) Query: 2 SQINFKLLHMFIAVAENKSFRQASEQLNRSQSAVSMQIKLLEDQVGAALFHRTTRRVELT 61 S INF LL F+ +AE +SFR ASEQ++RSQSA+S QIKLLE QVGA LFHRTTR V+LT Sbjct: 3 SDINFNLLRTFLLIAETRSFRGASEQVHRSQSAISAQIKLLEAQVGAELFHRTTRSVQLT 62 Query: 62 AEGLQLLTHARRALGEWENGLREIREVIDIQRGTLSLACVPTIAATILPQALHAFQASYP 121 A G QL ARR + E E G+RE+RE + +Q G +++A P AA +LP L F+A YP Sbjct: 63 AAGKQLFDAARRGVREVEAGVREVRETLALQAGHVAVAATPIAAAALLPPVLARFEALYP 122 Query: 122 GININLRELAAEDMLDCLRRREADFGIGPETDGSTEFQFAPLFNDPIYALATKAFPFRKR 181 G+ +++RE + D+ + R E DFG+ P G+ E F PL + I AL Sbjct: 123 GVGMSVRERQSADVQAQVLRGEVDFGVVPGPMGA-ECDFEPLVAEEICALMAPRLCPEAA 181 Query: 182 SAVDLTELSAYPILLNSKSAALRSMLERALATRNLQMKIKFEVEHSYTLAALAGAGLGVG 241 + L +++ P+LL S + +LR +L++A +++ K+E ++TL A+A AGLGV Sbjct: 182 DPMALKDVARLPLLLLSNATSLRILLDQAATRARVRLTPKYECIQAHTLIAMAAAGLGVA 241 Query: 242 ILPKVALPRPIRKTMQALPIVNPTLERTVCIVSLRGQSFSPAAGALTSVIHK 293 ILP++ALP K ++ + ++P L R + +++LRG+ +PAA L S++ + Sbjct: 242 ILPRLALPARPPKGLR-ICRLSPPLTRQMGLLTLRGRRLAPAAEKLASLLRE 292 >ref|NP_744204.1| LysR family transcriptional regulator [Pseudomonas putida KT2440] ref|YP_001268994.1| LysR family transcriptional regulator [Pseudomonas putida F1] gb|AAN67668.1|AE016397_2 transcriptional regulator, LysR family [Pseudomonas putida KT2440] gb|ABQ79810.1| transcriptional regulator, LysR family [Pseudomonas putida F1] gb|ADR61188.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 297 Score = 188 bits (478), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 104/280 (37%), Positives = 162/280 (57%) Query: 12 FIAVAENKSFRQASEQLNRSQSAVSMQIKLLEDQVGAALFHRTTRRVELTAEGLQLLTHA 71 F+ +AE SF +A+E L+ SQ A+S +IK LE+ +G +L RTTRRV LT+ G L A Sbjct: 11 FVKIAELGSFHEAAEALHLSQPALSRRIKKLEEGLGTSLLERTTRRVSLTSVGRDFLPKA 70 Query: 72 RRALGEWENGLREIREVIDIQRGTLSLACVPTIAATILPQALHAFQASYPGININLRELA 131 RR L ++E+ + IRE+ + Q G ++LAC+PT A LP + + YP I I L +L+ Sbjct: 71 RRLLDDFEDSILSIRELAERQTGQVTLACIPTAAFYFLPSVIRDYNEQYPKIRIRLLDLS 130 Query: 132 AEDMLDCLRRREADFGIGPETDGSTEFQFAPLFNDPIYALATKAFPFRKRSAVDLTELSA 191 A D L+ + R EADFGI + + +F L + + P R++V TEL+ Sbjct: 131 ANDGLEAVLRGEADFGINMMSGQHPDIEFVSLVQEHFVLACRRDHPLANRASVTWTELAD 190 Query: 192 YPILLNSKSAALRSMLERALATRNLQMKIKFEVEHSYTLAALAGAGLGVGILPKVALPRP 251 Y ++ + + R +L+ AL+ NL+ K +EV+H T + AGLGV +P +A+P Sbjct: 191 YRLIGVGRLSGNRMLLDHALSGLNLRPKWFYEVQHLSTSLGMVEAGLGVSAMPSLAMPNA 250 Query: 252 IRKTMQALPIVNPTLERTVCIVSLRGQSFSPAAGALTSVI 291 T+ ++P++ P + RT+ +V RG S SPAA S++ Sbjct: 251 DHPTLVSVPLIEPQVTRTLGLVYRRGASLSPAAEKFVSIL 290 >ref|YP_001667814.1| LysR family transcriptional regulator [Pseudomonas putida GB-1] gb|ABY97478.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1] Length = 297 Score = 188 bits (478), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 104/280 (37%), Positives = 162/280 (57%) Query: 12 FIAVAENKSFRQASEQLNRSQSAVSMQIKLLEDQVGAALFHRTTRRVELTAEGLQLLTHA 71 F+ +AE SF +A+E L+ SQ A+S +IK LE+ +G +L RTTRRV LT+ G L A Sbjct: 11 FVKIAELGSFHEAAEALHLSQPALSRRIKKLEEGLGTSLLERTTRRVSLTSVGRDFLPKA 70 Query: 72 RRALGEWENGLREIREVIDIQRGTLSLACVPTIAATILPQALHAFQASYPGININLRELA 131 RR L ++E+ + IRE+ + Q G ++LAC+PT A LP + + YP I I L +L+ Sbjct: 71 RRLLDDFEDSILSIRELAERQTGQVTLACIPTAAFYFLPSVIRDYNEQYPKIRIRLLDLS 130 Query: 132 AEDMLDCLRRREADFGIGPETDGSTEFQFAPLFNDPIYALATKAFPFRKRSAVDLTELSA 191 A D L+ + R EADFGI + + +F L + + P R++V TEL+ Sbjct: 131 ANDGLEAVLRGEADFGINMMSGQHPDIEFVTLVQEHFVLACRRDHPLANRASVTWTELAD 190 Query: 192 YPILLNSKSAALRSMLERALATRNLQMKIKFEVEHSYTLAALAGAGLGVGILPKVALPRP 251 Y ++ + + R +L+ AL+ NL+ K +EV+H T + AGLGV +P +A+P Sbjct: 191 YRLIGVGRLSGNRMLLDHALSGLNLRPKWFYEVQHLSTSLGMVEAGLGVSAMPSLAMPDA 250 Query: 252 IRKTMQALPIVNPTLERTVCIVSLRGQSFSPAAGALTSVI 291 T+ ++P++ P + RT+ +V RG S SPAA S++ Sbjct: 251 DHPTLVSVPLIEPQVSRTLGLVYRRGASLSPAAEKFVSIL 290