BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0025.p (309 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001242211.1| CbbX-like protein [Bradyrhizobium sp. BTAi1]... 523 e-146 ref|YP_001203776.1| CbbX-like protein [Bradyrhizobium sp. ORS 27... 520 e-145 ref|YP_004110247.1| CbbX protein [Rhodopseudomonas palustris DX-... 506 e-141 ref|YP_004638450.1| rubisco expressions protein CbbX [Oligotroph... 502 e-140 ref|NP_946907.1| cbbX protein [Rhodopseudomonas palustris CGA009... 501 e-140 >ref|YP_001242211.1| CbbX-like protein [Bradyrhizobium sp. BTAi1] gb|ABQ38305.1| putative CbbX-like protein, containing AAA-ATPase domain [Bradyrhizobium sp. BTAi1] Length = 310 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 251/293 (85%), Positives = 271/293 (92%) Query: 11 TPLETIDLRHEFADLGIGDVLDQLDSELIGLKPVKTRIREIASLLLVERIRQKMALATTF 70 TP++TIDLR EF + I VL+QLD EL+GL PVKTRIREIASLLL+ERIR+KM LATTF Sbjct: 12 TPVDTIDLRREFESVEIAPVLEQLDRELVGLAPVKTRIREIASLLLMERIRRKMGLATTF 71 Query: 71 PTLHMSFTGNPGTGKTTVALRMAGILHRLGFVRRGHVISVTRDDLVGQYIGHTAPKTKEI 130 PTLHMSFTGNPGTGKTTVALRMAGILHRLGFVRRGHVISVTRDDLVGQYIGHTAPKTKE+ Sbjct: 72 PTLHMSFTGNPGTGKTTVALRMAGILHRLGFVRRGHVISVTRDDLVGQYIGHTAPKTKEV 131 Query: 131 LKKAMGGVLFIDEAYYLYRPENERDYGQEAIEILLQVMEQQREDLVVILAGYGDRMEKFF 190 LKKAMGGVLFIDEAYYLYRPENERDYGQE+IEILLQ+ME QREDLVVILAGY DRMEKFF Sbjct: 132 LKKAMGGVLFIDEAYYLYRPENERDYGQESIEILLQIMESQREDLVVILAGYADRMEKFF 191 Query: 191 QSNPGFRSRIAHHIDFPDYSHGELLWIAELMLQQQNYRFSPEAREAFIRYIAVRKEQPLF 250 QSNPGFRSRIAHHIDFPDYS GELL IAE+ML+ QNYRFSPEAR AF +YIAVR+ QPLF Sbjct: 192 QSNPGFRSRIAHHIDFPDYSEGELLTIAEMMLEGQNYRFSPEARAAFEKYIAVRRTQPLF 251 Query: 251 SNARSIRNALDRIRLRQANRIVAKLDRTLTADDVMSIEAGDVLASRVFGKGAG 303 SNARSIRNALDR+RLRQANR+V++LDR LT+D+VMSIEA DVLASRVF G G Sbjct: 252 SNARSIRNALDRVRLRQANRLVSRLDRVLTSDEVMSIEASDVLASRVFAHGQG 304 >ref|YP_001203776.1| CbbX-like protein [Bradyrhizobium sp. ORS 278] emb|CAL75539.1| putative CbbX-like protein, containing AAA-ATPase domain [Bradyrhizobium sp. ORS 278] Length = 313 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 250/291 (85%), Positives = 269/291 (92%) Query: 11 TPLETIDLRHEFADLGIGDVLDQLDSELIGLKPVKTRIREIASLLLVERIRQKMALATTF 70 TP++TIDLR EF + I VL+QLD EL+GL PVKTRIREIASLLL+ERIRQKM LATTF Sbjct: 12 TPVDTIDLRREFESVDIAPVLEQLDRELVGLVPVKTRIREIASLLLMERIRQKMGLATTF 71 Query: 71 PTLHMSFTGNPGTGKTTVALRMAGILHRLGFVRRGHVISVTRDDLVGQYIGHTAPKTKEI 130 PTLHMSFTGNPGTGKTTVALRMAGILHRLGFVRRGHVISVTRDDLVGQYIGHTAPKTKE+ Sbjct: 72 PTLHMSFTGNPGTGKTTVALRMAGILHRLGFVRRGHVISVTRDDLVGQYIGHTAPKTKEV 131 Query: 131 LKKAMGGVLFIDEAYYLYRPENERDYGQEAIEILLQVMEQQREDLVVILAGYGDRMEKFF 190 LKKAMGGVLFIDEAYYLYRPENERDYGQE+IEILLQ+ME QREDLVVILAGY DRMEKFF Sbjct: 132 LKKAMGGVLFIDEAYYLYRPENERDYGQESIEILLQIMESQREDLVVILAGYADRMEKFF 191 Query: 191 QSNPGFRSRIAHHIDFPDYSHGELLWIAELMLQQQNYRFSPEAREAFIRYIAVRKEQPLF 250 QSNPGFRSRIAHHIDFPDYS GELL IAE+ML QNYRF+P+AR AF +YIAVR+ QPLF Sbjct: 192 QSNPGFRSRIAHHIDFPDYSEGELLTIAEMMLDGQNYRFTPDARVAFEKYIAVRRTQPLF 251 Query: 251 SNARSIRNALDRIRLRQANRIVAKLDRTLTADDVMSIEAGDVLASRVFGKG 301 SNARSIRNALDR+RLRQANR+V++LDR LT+DDVMSIEA DVLASRVF K Sbjct: 252 SNARSIRNALDRVRLRQANRLVSRLDRVLTSDDVMSIEASDVLASRVFAKA 302 >ref|YP_004110247.1| CbbX protein [Rhodopseudomonas palustris DX-1] gb|ADU45514.1| CbbX protein [Rhodopseudomonas palustris DX-1] Length = 307 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 242/294 (82%), Positives = 270/294 (91%) Query: 10 ETPLETIDLRHEFADLGIGDVLDQLDSELIGLKPVKTRIREIASLLLVERIRQKMALATT 69 + P +DLR EF ++GIG+VLDQLD EL+GLKPVKTRIREIA+LLLVER+R++M LAT Sbjct: 12 DAPPARVDLRAEFNEVGIGEVLDQLDRELVGLKPVKTRIREIAALLLVERLRKRMGLATG 71 Query: 70 FPTLHMSFTGNPGTGKTTVALRMAGILHRLGFVRRGHVISVTRDDLVGQYIGHTAPKTKE 129 PTLHMSFTGNPGTGKTTVALR+A ILH+LGFVRRGHV+SVTRD+LVGQYIGHTAPKTKE Sbjct: 72 NPTLHMSFTGNPGTGKTTVALRIASILHKLGFVRRGHVVSVTRDELVGQYIGHTAPKTKE 131 Query: 130 ILKKAMGGVLFIDEAYYLYRPENERDYGQEAIEILLQVMEQQREDLVVILAGYGDRMEKF 189 +LKKAMGGVLFIDEAYYLYRPENERDYGQEAIEILLQVME QR+DLVVILAGY DRMEKF Sbjct: 132 VLKKAMGGVLFIDEAYYLYRPENERDYGQEAIEILLQVMENQRDDLVVILAGYADRMEKF 191 Query: 190 FQSNPGFRSRIAHHIDFPDYSHGELLWIAELMLQQQNYRFSPEAREAFIRYIAVRKEQPL 249 FQSNPGFRSRIAHHIDFPDY+ GELL IAE ML +QNY F+PEA+ AF RYI +RK QPL Sbjct: 192 FQSNPGFRSRIAHHIDFPDYTDGELLTIAEGMLNEQNYHFAPEAKVAFERYIGIRKTQPL 251 Query: 250 FSNARSIRNALDRIRLRQANRIVAKLDRTLTADDVMSIEAGDVLASRVFGKGAG 303 F+NARSIRNALDRIRLRQANR++A LDR+LTA+D+M+IEAGDVLASRVFGKG G Sbjct: 252 FANARSIRNALDRIRLRQANRLIADLDRSLTAEDIMTIEAGDVLASRVFGKGEG 305 >ref|YP_004638450.1| rubisco expressions protein CbbX [Oligotropha carboxidovorans OM5] gb|AEI04495.1| rubisco expressions protein CbbX [Oligotropha carboxidovorans OM4] gb|AEI08123.1| rubisco expressions protein CbbX [Oligotropha carboxidovorans OM5] Length = 308 Score = 502 bits (1292), Expect = e-140, Method: Compositional matrix adjust. Identities = 239/308 (77%), Positives = 270/308 (87%) Query: 1 MTQAQEQIRETPLETIDLRHEFADLGIGDVLDQLDSELIGLKPVKTRIREIASLLLVERI 60 M E P+ IDLR EF+++GIG+VL+QLD ELIGL PVKTRIREIA+LLL+ERI Sbjct: 1 MLSTVENTEGKPVADIDLRKEFSEVGIGEVLEQLDRELIGLAPVKTRIREIAALLLIERI 60 Query: 61 RQKMALATTFPTLHMSFTGNPGTGKTTVALRMAGILHRLGFVRRGHVISVTRDDLVGQYI 120 RQ+M L+ PTLHMSFTGNPGTGKTTVALRMA ILH+LGFVRRGHV+SVTRD+LVGQYI Sbjct: 61 RQRMGLSAETPTLHMSFTGNPGTGKTTVALRMANILHKLGFVRRGHVVSVTRDELVGQYI 120 Query: 121 GHTAPKTKEILKKAMGGVLFIDEAYYLYRPENERDYGQEAIEILLQVMEQQREDLVVILA 180 GHTAPKTKEILKKAMGGVLFIDEAYYLYRP+NERDYGQEAIEILLQVME QR+DLVVILA Sbjct: 121 GHTAPKTKEILKKAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMESQRDDLVVILA 180 Query: 181 GYGDRMEKFFQSNPGFRSRIAHHIDFPDYSHGELLWIAELMLQQQNYRFSPEAREAFIRY 240 GYGDRM+KFF SNPGFRSR+AHHIDFPDY EL+WIAELML++QNY F+ EAR+AF RY Sbjct: 181 GYGDRMDKFFASNPGFRSRVAHHIDFPDYGDSELMWIAELMLKEQNYHFTAEARDAFARY 240 Query: 241 IAVRKEQPLFSNARSIRNALDRIRLRQANRIVAKLDRTLTADDVMSIEAGDVLASRVFGK 300 I +RK QPLFSNARSIRNALDRIRLRQANR+VA LDRT+TADD+ +I+A D+LASRVF K Sbjct: 241 IEIRKTQPLFSNARSIRNALDRIRLRQANRLVADLDRTVTADDIQAIDASDILASRVFDK 300 Query: 301 GAGAPGEG 308 + G+ Sbjct: 301 PSTPEGKS 308 >ref|NP_946907.1| cbbX protein [Rhodopseudomonas palustris CGA009] ref|YP_001990752.1| CbbX protein [Rhodopseudomonas palustris TIE-1] emb|CAE27002.1| cbbX protein homolog [Rhodopseudomonas palustris CGA009] gb|ACF00277.1| CbbX protein [Rhodopseudomonas palustris TIE-1] Length = 308 Score = 501 bits (1290), Expect = e-140, Method: Compositional matrix adjust. Identities = 241/294 (81%), Positives = 269/294 (91%) Query: 10 ETPLETIDLRHEFADLGIGDVLDQLDSELIGLKPVKTRIREIASLLLVERIRQKMALATT 69 + P +DLR EF ++GIG+VLDQLD ELIGLKPVKTRIREIA+LLLVER+R++M LAT Sbjct: 12 DAPPARVDLRAEFNEVGIGEVLDQLDRELIGLKPVKTRIREIAALLLVERLRKRMGLATG 71 Query: 70 FPTLHMSFTGNPGTGKTTVALRMAGILHRLGFVRRGHVISVTRDDLVGQYIGHTAPKTKE 129 PTLHMSFTGNPGTGKTTVALR+A ILH+LGFVRRGHV+SVTRD+LVGQYIGHTAPKTKE Sbjct: 72 NPTLHMSFTGNPGTGKTTVALRIASILHKLGFVRRGHVVSVTRDELVGQYIGHTAPKTKE 131 Query: 130 ILKKAMGGVLFIDEAYYLYRPENERDYGQEAIEILLQVMEQQREDLVVILAGYGDRMEKF 189 +LKKAMGGVLFIDEAYYLYRPENERDYGQEAIEILLQVME QR+DLVVILAGY DRMEKF Sbjct: 132 VLKKAMGGVLFIDEAYYLYRPENERDYGQEAIEILLQVMENQRDDLVVILAGYADRMEKF 191 Query: 190 FQSNPGFRSRIAHHIDFPDYSHGELLWIAELMLQQQNYRFSPEAREAFIRYIAVRKEQPL 249 FQSNPGFRSRIAHHIDFPDY+ GELL IAE ML +QNY F+PEA+ AF RYI +RK QPL Sbjct: 192 FQSNPGFRSRIAHHIDFPDYTDGELLTIAEGMLSEQNYHFAPEAKAAFERYIGIRKTQPL 251 Query: 250 FSNARSIRNALDRIRLRQANRIVAKLDRTLTADDVMSIEAGDVLASRVFGKGAG 303 F+NARSIRNALDRIRLRQANR++A LDR+L+A+D+M+IEAGDVLASRVFGK G Sbjct: 252 FANARSIRNALDRIRLRQANRLIADLDRSLSAEDLMTIEAGDVLASRVFGKEDG 305