BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0023.p         (292 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001242213.1| ribulose bisophosphate carboxylase [Bradyrhi...   584   e-165
ref|YP_001203774.1| ribulose bisophosphate carboxylase [Bradyrhi...   582   e-164
ref|YP_015620.1| ribulose bisophosphate carboxylase [Oligotropha...   571   e-161
ref|NP_769225.1| ribulose bisophosphate carboxylase [Bradyrhizob...   565   e-159
sp|Q9ZI34.1|RBL_BRAJA RecName: Full=Ribulose bisphosphate carbox...   565   e-159

>ref|YP_001242213.1| ribulose bisophosphate carboxylase [Bradyrhizobium sp. BTAi1]
 sp|A5EQ63.1|RBL1C_BRASB RecName: Full=Ribulose bisphosphate carboxylase large chain 3;
           Short=RuBisCO large subunit 3
 gb|ABQ38307.1| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
           [Bradyrhizobium sp. BTAi1]
          Length = 486

 Score =  584 bits (1505), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 275/291 (94%), Positives = 285/291 (97%)

Query: 1   LKGGLDFTKDDENINSQPFMHWRERFLYCMEAVNRAQAATGEIKGTYLNVTAATMEDMYE 60
           LKGGLDFTKDDENINSQPFMHWRERFLYCMEAVN+AQAATGEIKGTYLNVTAATMEDMYE
Sbjct: 195 LKGGLDFTKDDENINSQPFMHWRERFLYCMEAVNKAQAATGEIKGTYLNVTAATMEDMYE 254

Query: 61  RAEFAHELGSNIVMIDLVIGYTAIQSMAKWARRNNMILHLHRAGHSTYTRQRSHGVSFRV 120
           RAEFA ELGS I+MIDLVIGYTAIQSMAKWARRN+MILHLHRAGHSTYTRQR+HGVSFRV
Sbjct: 255 RAEFAKELGSTIIMIDLVIGYTAIQSMAKWARRNDMILHLHRAGHSTYTRQRAHGVSFRV 314

Query: 121 IAKWMRLAGVDHIHAGTVVGKLEGDPNTTRGYYDICREDFNPLHLEHGVFFDQNWASLNK 180
           IAKWMRLAGVDHIHAGTVVGKLEGDPNTTRGYYDICREDFNP+ LEHGVFFDQ+WASLNK
Sbjct: 315 IAKWMRLAGVDHIHAGTVVGKLEGDPNTTRGYYDICREDFNPMRLEHGVFFDQHWASLNK 374

Query: 181 LMPVASGGIHAGQMHQLLDLLGEDVVLQFGGGTIGHPRGIQAGATANRVALEAMILARNE 240
           LMPVASGGIHAGQMHQLLDLLGEDVVLQFGGGTIGHPRGI AGATANRVALEAMILARNE
Sbjct: 375 LMPVASGGIHAGQMHQLLDLLGEDVVLQFGGGTIGHPRGIAAGATANRVALEAMILARNE 434

Query: 241 GRDYVHEGPEILAKAAQTCTPLREALDVWKDVTFNYESTDAPDFVPTPSMA 291
           GRDYVHEGPEILAKAAQTCTPLREAL++WKDVTFNYESTD+PDFVPT + A
Sbjct: 435 GRDYVHEGPEILAKAAQTCTPLREALEIWKDVTFNYESTDSPDFVPTVTPA 485


>ref|YP_001203774.1| ribulose bisophosphate carboxylase [Bradyrhizobium sp. ORS 278]
 sp|A4YNR1.1|RBL1A_BRASO RecName: Full=Ribulose bisphosphate carboxylase large chain 1;
           Short=RuBisCO large subunit 1
 emb|CAL75537.1| Ribulose bisphosphate carboxylase large chain (RuBisCO large
           subunit) [Bradyrhizobium sp. ORS 278]
          Length = 486

 Score =  582 bits (1499), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 273/291 (93%), Positives = 285/291 (97%)

Query: 1   LKGGLDFTKDDENINSQPFMHWRERFLYCMEAVNRAQAATGEIKGTYLNVTAATMEDMYE 60
           LKGGLDFTKDDENINSQPFMHWRERFLYCMEAVN+AQAATGEIKGTYLNVTAATMEDMYE
Sbjct: 195 LKGGLDFTKDDENINSQPFMHWRERFLYCMEAVNKAQAATGEIKGTYLNVTAATMEDMYE 254

Query: 61  RAEFAHELGSNIVMIDLVIGYTAIQSMAKWARRNNMILHLHRAGHSTYTRQRSHGVSFRV 120
           RAEFA ELGSNI+MIDLVIGYTAIQSMAKW+R+N+MILHLHRAGHSTYTRQR+HGVSFRV
Sbjct: 255 RAEFAKELGSNIIMIDLVIGYTAIQSMAKWSRKNDMILHLHRAGHSTYTRQRAHGVSFRV 314

Query: 121 IAKWMRLAGVDHIHAGTVVGKLEGDPNTTRGYYDICREDFNPLHLEHGVFFDQNWASLNK 180
           IAKWMRLAGVDHIHAGTVVGKLEGDPNTTRGYYDICREDFNP+ LEHGVFFDQ+WASLNK
Sbjct: 315 IAKWMRLAGVDHIHAGTVVGKLEGDPNTTRGYYDICREDFNPMRLEHGVFFDQHWASLNK 374

Query: 181 LMPVASGGIHAGQMHQLLDLLGEDVVLQFGGGTIGHPRGIQAGATANRVALEAMILARNE 240
           LMPVASGGIHAGQMHQLLDLLGEDVVLQFGGGTIGHPRGI AGATANRVALEAMILARNE
Sbjct: 375 LMPVASGGIHAGQMHQLLDLLGEDVVLQFGGGTIGHPRGIAAGATANRVALEAMILARNE 434

Query: 241 GRDYVHEGPEILAKAAQTCTPLREALDVWKDVTFNYESTDAPDFVPTPSMA 291
           GRDYVHEGPEILAKAA TCTPLREAL++WKDVTFNYESTD+PDFVPT + A
Sbjct: 435 GRDYVHEGPEILAKAAMTCTPLREALEIWKDVTFNYESTDSPDFVPTVTPA 485


>ref|YP_015620.1| ribulose bisophosphate carboxylase [Oligotropha carboxidovorans
           OM5]
 ref|YP_004638448.1| ribulose bisphosphate carboxylase large chain CbbL [Oligotropha
           carboxidovorans OM5]
 sp|Q6LBA6.1|RBL_OLICO RecName: Full=Ribulose bisphosphate carboxylase large chain;
           Short=RuBisCO large subunit
 gb|AEI04493.1| ribulose bisphosphate carboxylase large chain CbbL [Oligotropha
           carboxidovorans OM4]
 gb|AEI08121.1| ribulose bisphosphate carboxylase large chain CbbL [Oligotropha
           carboxidovorans OM5]
          Length = 486

 Score =  571 bits (1471), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 269/292 (92%), Positives = 280/292 (95%)

Query: 1   LKGGLDFTKDDENINSQPFMHWRERFLYCMEAVNRAQAATGEIKGTYLNVTAATMEDMYE 60
           LKGGLDFTKDDENINSQPFMHWRERFLYCMEAVNRAQAA+GE+KGTYLNVTAATMEDMYE
Sbjct: 195 LKGGLDFTKDDENINSQPFMHWRERFLYCMEAVNRAQAASGEVKGTYLNVTAATMEDMYE 254

Query: 61  RAEFAHELGSNIVMIDLVIGYTAIQSMAKWARRNNMILHLHRAGHSTYTRQRSHGVSFRV 120
           RAEFA ELGS IVMIDLVIGYTAIQSMAKWAR+N+MILHLHRAGHSTYTRQ++HGVSFRV
Sbjct: 255 RAEFAKELGSCIVMIDLVIGYTAIQSMAKWARKNDMILHLHRAGHSTYTRQKNHGVSFRV 314

Query: 121 IAKWMRLAGVDHIHAGTVVGKLEGDPNTTRGYYDICREDFNPLHLEHGVFFDQNWASLNK 180
           IAKWMRLAGVDHIHAGTVVGKLEGDPNTTRGYYDICRE+FNP  LEHG+FFDQNWASLNK
Sbjct: 315 IAKWMRLAGVDHIHAGTVVGKLEGDPNTTRGYYDICREEFNPTKLEHGIFFDQNWASLNK 374

Query: 181 LMPVASGGIHAGQMHQLLDLLGEDVVLQFGGGTIGHPRGIQAGATANRVALEAMILARNE 240
           +MPVASGGIHAGQMHQLLDLLGEDVVLQFGGGTIGHP GIQAGA ANRVALEAMILARNE
Sbjct: 375 MMPVASGGIHAGQMHQLLDLLGEDVVLQFGGGTIGHPMGIQAGAIANRVALEAMILARNE 434

Query: 241 GRDYVHEGPEILAKAAQTCTPLREALDVWKDVTFNYESTDAPDFVPTPSMAV 292
           GRDYV EGPEILAKAA TCTPL+ AL+VWKDVTFNYESTDAPDFVPT   AV
Sbjct: 435 GRDYVAEGPEILAKAAATCTPLKSALEVWKDVTFNYESTDAPDFVPTAIAAV 486


>ref|NP_769225.1| ribulose bisophosphate carboxylase [Bradyrhizobium japonicum USDA
           110]
 gb|AAN61148.1| CbbL [Bradyrhizobium japonicum]
 dbj|BAC47850.1| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
           [Bradyrhizobium japonicum USDA 110]
          Length = 486

 Score =  565 bits (1456), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 263/287 (91%), Positives = 277/287 (96%)

Query: 1   LKGGLDFTKDDENINSQPFMHWRERFLYCMEAVNRAQAATGEIKGTYLNVTAATMEDMYE 60
           LKGGLDFTKDDENINSQPFMHWR+RFLYC+EAVNRAQAA+GE+KGTYLN+TA TMEDMYE
Sbjct: 195 LKGGLDFTKDDENINSQPFMHWRDRFLYCIEAVNRAQAASGEVKGTYLNITAGTMEDMYE 254

Query: 61  RAEFAHELGSNIVMIDLVIGYTAIQSMAKWARRNNMILHLHRAGHSTYTRQRSHGVSFRV 120
           RAEFA ELGS IVMIDLVIGYTAIQSMAKWARRN+MILHLHRAGHSTYTRQ+SHGVSFRV
Sbjct: 255 RAEFAKELGSCIVMIDLVIGYTAIQSMAKWARRNDMILHLHRAGHSTYTRQKSHGVSFRV 314

Query: 121 IAKWMRLAGVDHIHAGTVVGKLEGDPNTTRGYYDICREDFNPLHLEHGVFFDQNWASLNK 180
           IAKWMRLAGVDHIHAGTVVGKLEGDPNTTRGYYD+CREDFNP  LEHG+FFDQ+WASLNK
Sbjct: 315 IAKWMRLAGVDHIHAGTVVGKLEGDPNTTRGYYDVCREDFNPTKLEHGLFFDQSWASLNK 374

Query: 181 LMPVASGGIHAGQMHQLLDLLGEDVVLQFGGGTIGHPRGIQAGATANRVALEAMILARNE 240
           +MPVASGGIHAGQMHQLLDLLGEDVVLQFGGGTIGHP GI AGA ANRVALEAMILARNE
Sbjct: 375 MMPVASGGIHAGQMHQLLDLLGEDVVLQFGGGTIGHPMGIAAGAIANRVALEAMILARNE 434

Query: 241 GRDYVHEGPEILAKAAQTCTPLREALDVWKDVTFNYESTDAPDFVPT 287
           GRDYVHEGPEILAKAAQTCTPL+ AL+VWKDVTFNY+STD PDFVPT
Sbjct: 435 GRDYVHEGPEILAKAAQTCTPLKSALEVWKDVTFNYQSTDTPDFVPT 481


>sp|Q9ZI34.1|RBL_BRAJA RecName: Full=Ribulose bisphosphate carboxylase large chain;
           Short=RuBisCO large subunit
 gb|AAD05386.1| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
           [Bradyrhizobium japonicum]
          Length = 486

 Score =  565 bits (1455), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 263/287 (91%), Positives = 277/287 (96%)

Query: 1   LKGGLDFTKDDENINSQPFMHWRERFLYCMEAVNRAQAATGEIKGTYLNVTAATMEDMYE 60
           LKGGLDFTKDDENINSQPFMHWR+RFLYC+EAVNRAQAA+GE+KGTYLN+TA TMEDMYE
Sbjct: 195 LKGGLDFTKDDENINSQPFMHWRDRFLYCIEAVNRAQAASGEVKGTYLNITAGTMEDMYE 254

Query: 61  RAEFAHELGSNIVMIDLVIGYTAIQSMAKWARRNNMILHLHRAGHSTYTRQRSHGVSFRV 120
           RAEFA ELGS IVMIDLVIGYTAIQSMAKWARRN+MILHLHRAGHSTYTRQ+SHGVSFRV
Sbjct: 255 RAEFAKELGSCIVMIDLVIGYTAIQSMAKWARRNDMILHLHRAGHSTYTRQKSHGVSFRV 314

Query: 121 IAKWMRLAGVDHIHAGTVVGKLEGDPNTTRGYYDICREDFNPLHLEHGVFFDQNWASLNK 180
           IAKWMRLAGVDHIHAGTVVGKLEGDPNTTRGYYD+CREDFNP  LEHG+FFDQ+WASLNK
Sbjct: 315 IAKWMRLAGVDHIHAGTVVGKLEGDPNTTRGYYDVCREDFNPTKLEHGLFFDQSWASLNK 374

Query: 181 LMPVASGGIHAGQMHQLLDLLGEDVVLQFGGGTIGHPRGIQAGATANRVALEAMILARNE 240
           +MPVASGGIHAGQMHQLLDLLGEDVVLQFGGGTIGHP GI AGA ANRVALEAMILARNE
Sbjct: 375 MMPVASGGIHAGQMHQLLDLLGEDVVLQFGGGTIGHPMGIAAGAIANRVALEAMILARNE 434

Query: 241 GRDYVHEGPEILAKAAQTCTPLREALDVWKDVTFNYESTDAPDFVPT 287
           GRDYVHEGPEILAKAAQTCTPL+ AL+VWKDVTFNY+STD PDFVPT
Sbjct: 435 GRDYVHEGPEILAKAAQTCTPLKSALEVWKDVTFNYQSTDTPDFVPT 481