BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0022.p         (172 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001242213.1| ribulose bisophosphate carboxylase [Bradyrhi...   323   7e-87
ref|YP_001203774.1| ribulose bisophosphate carboxylase [Bradyrhi...   321   2e-86
ref|YP_004110249.1| ribulose-bisphosphate carboxylase [Rhodopseu...   321   3e-86
ref|YP_001990750.1| ribulose bisophosphate carboxylase [Rhodopse...   320   4e-86
ref|YP_780293.1| ribulose bisophosphate carboxylase [Rhodopseudo...   319   1e-85

>ref|YP_001242213.1| ribulose bisophosphate carboxylase [Bradyrhizobium sp. BTAi1]
 sp|A5EQ63.1|RBL1C_BRASB RecName: Full=Ribulose bisphosphate carboxylase large chain 3;
           Short=RuBisCO large subunit 3
 gb|ABQ38307.1| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
           [Bradyrhizobium sp. BTAi1]
          Length = 486

 Score =  323 bits (827), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 153/163 (93%), Positives = 158/163 (96%)

Query: 3   QSITVRGKDRYKSGVMEYKRMGYWEPNYEPKDTDVIALFRVTPQDGVDPTEACAAVAGES 62
           QSITVRGKDRYKSGVMEYK+MGYWEP+Y+PKDTDVIALFRVTPQDGVDP EACAAVAGES
Sbjct: 4   QSITVRGKDRYKSGVMEYKKMGYWEPSYQPKDTDVIALFRVTPQDGVDPVEACAAVAGES 63

Query: 63  STATWTVVWTDRLKAAEKYRAKCYRVDPVPNSPGSYFAYIAYDLDLFEPGSISNLTASII 122
           STATWTVVWTDRL AAEKYRAKCYRV+PVP SPGSYFAYIAYDLDLFEPGSI+NLTASII
Sbjct: 64  STATWTVVWTDRLTAAEKYRAKCYRVEPVPGSPGSYFAYIAYDLDLFEPGSIANLTASII 123

Query: 123 GNVFGFKPLKALRLEDMRLPTAYVKTFQGPATGIVVERERLPK 165
           GNVFGFKPLKALRLEDMRLP AYVKTFQGPATGIVVERERL K
Sbjct: 124 GNVFGFKPLKALRLEDMRLPVAYVKTFQGPATGIVVERERLDK 166


>ref|YP_001203774.1| ribulose bisophosphate carboxylase [Bradyrhizobium sp. ORS 278]
 sp|A4YNR1.1|RBL1A_BRASO RecName: Full=Ribulose bisphosphate carboxylase large chain 1;
           Short=RuBisCO large subunit 1
 emb|CAL75537.1| Ribulose bisphosphate carboxylase large chain (RuBisCO large
           subunit) [Bradyrhizobium sp. ORS 278]
          Length = 486

 Score =  321 bits (823), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 152/163 (93%), Positives = 157/163 (96%)

Query: 3   QSITVRGKDRYKSGVMEYKRMGYWEPNYEPKDTDVIALFRVTPQDGVDPTEACAAVAGES 62
           QSITVRGKDRYKSGVMEYK+MGYWEP+Y+P DTDVIALFRVTPQDGVDP EACAAVAGES
Sbjct: 4   QSITVRGKDRYKSGVMEYKKMGYWEPSYQPNDTDVIALFRVTPQDGVDPVEACAAVAGES 63

Query: 63  STATWTVVWTDRLKAAEKYRAKCYRVDPVPNSPGSYFAYIAYDLDLFEPGSISNLTASII 122
           STATWTVVWTDRL AAEKYRAKCYRV+PVP SPGSYFAYIAYDLDLFEPGSI+NLTASII
Sbjct: 64  STATWTVVWTDRLTAAEKYRAKCYRVEPVPGSPGSYFAYIAYDLDLFEPGSIANLTASII 123

Query: 123 GNVFGFKPLKALRLEDMRLPTAYVKTFQGPATGIVVERERLPK 165
           GNVFGFKPLKALRLEDMRLP AYVKTFQGPATGIVVERERL K
Sbjct: 124 GNVFGFKPLKALRLEDMRLPVAYVKTFQGPATGIVVERERLDK 166


>ref|YP_004110249.1| ribulose-bisphosphate carboxylase [Rhodopseudomonas palustris DX-1]
 gb|ADU45516.1| Ribulose-bisphosphate carboxylase [Rhodopseudomonas palustris DX-1]
          Length = 485

 Score =  321 bits (822), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 151/165 (91%), Positives = 157/165 (95%)

Query: 1   MQQSITVRGKDRYKSGVMEYKRMGYWEPNYEPKDTDVIALFRVTPQDGVDPTEACAAVAG 60
           M ++ T+RGKDRYKSGVMEYK+MGYWEP+YEPKDTDVIALFRVTPQDGVDP EA AAVAG
Sbjct: 1   MNETTTIRGKDRYKSGVMEYKKMGYWEPDYEPKDTDVIALFRVTPQDGVDPIEAAAAVAG 60

Query: 61  ESSTATWTVVWTDRLKAAEKYRAKCYRVDPVPNSPGSYFAYIAYDLDLFEPGSISNLTAS 120
           ESSTATWTVVWTDRL AAEKYRAKCYRVDPVPNSPG YFAYIAYDLDLFEPGSISNLTAS
Sbjct: 61  ESSTATWTVVWTDRLTAAEKYRAKCYRVDPVPNSPGQYFAYIAYDLDLFEPGSISNLTAS 120

Query: 121 IIGNVFGFKPLKALRLEDMRLPTAYVKTFQGPATGIVVERERLPK 165
           IIGNVFGFKPLKALRLEDMRLP AYVKTFQGPATGIVVERER+ K
Sbjct: 121 IIGNVFGFKPLKALRLEDMRLPIAYVKTFQGPATGIVVERERMDK 165


>ref|YP_001990750.1| ribulose bisophosphate carboxylase [Rhodopseudomonas palustris
           TIE-1]
 sp|B3Q7E1.1|RBL_RHOPT RecName: Full=Ribulose bisphosphate carboxylase large chain;
           Short=RuBisCO large subunit
 gb|ACF00275.1| Ribulose-bisphosphate carboxylase [Rhodopseudomonas palustris
           TIE-1]
          Length = 485

 Score =  320 bits (821), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 150/165 (90%), Positives = 158/165 (95%)

Query: 1   MQQSITVRGKDRYKSGVMEYKRMGYWEPNYEPKDTDVIALFRVTPQDGVDPTEACAAVAG 60
           M +++T+RGK+RYKSGVMEYK+MGYWEP+YEPKDTDVIALFRVTPQDGVDP EA AAVAG
Sbjct: 1   MNEAVTIRGKERYKSGVMEYKKMGYWEPDYEPKDTDVIALFRVTPQDGVDPIEAAAAVAG 60

Query: 61  ESSTATWTVVWTDRLKAAEKYRAKCYRVDPVPNSPGSYFAYIAYDLDLFEPGSISNLTAS 120
           ESSTATWTVVWTDRL AAEKYRAKCYRVDPVPNSPG YFAYIAYDLDLFEPGSISNLTAS
Sbjct: 61  ESSTATWTVVWTDRLTAAEKYRAKCYRVDPVPNSPGQYFAYIAYDLDLFEPGSISNLTAS 120

Query: 121 IIGNVFGFKPLKALRLEDMRLPTAYVKTFQGPATGIVVERERLPK 165
           IIGNVFGFKPLKALRLEDMRLP AYVKTFQGPATGIVVERER+ K
Sbjct: 121 IIGNVFGFKPLKALRLEDMRLPIAYVKTFQGPATGIVVERERMDK 165


>ref|YP_780293.1| ribulose bisophosphate carboxylase [Rhodopseudomonas palustris
           BisA53]
 sp|Q07RX1.1|RBL_RHOP5 RecName: Full=Ribulose bisphosphate carboxylase large chain;
           Short=RuBisCO large subunit
 gb|ABJ05313.1| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
           [Rhodopseudomonas palustris BisA53]
          Length = 485

 Score =  319 bits (817), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 150/165 (90%), Positives = 157/165 (95%)

Query: 1   MQQSITVRGKDRYKSGVMEYKRMGYWEPNYEPKDTDVIALFRVTPQDGVDPTEACAAVAG 60
           M +S+TVRGKDRYKSGVMEYK+MGYWEP+YEPKDTDVIALFRVTPQDGVDP EA AAVAG
Sbjct: 1   MNESVTVRGKDRYKSGVMEYKKMGYWEPDYEPKDTDVIALFRVTPQDGVDPIEASAAVAG 60

Query: 61  ESSTATWTVVWTDRLKAAEKYRAKCYRVDPVPNSPGSYFAYIAYDLDLFEPGSISNLTAS 120
           ESSTATWTVVWTDRL AAEKYRAKCYRVDPVPNSPG YFAYIAYDLDLFE GSI+NL+AS
Sbjct: 61  ESSTATWTVVWTDRLTAAEKYRAKCYRVDPVPNSPGQYFAYIAYDLDLFENGSIANLSAS 120

Query: 121 IIGNVFGFKPLKALRLEDMRLPTAYVKTFQGPATGIVVERERLPK 165
           IIGNVFGFKPLKALRLEDMRLP AYVKTFQGPATGIVVERER+ K
Sbjct: 121 IIGNVFGFKPLKALRLEDMRLPVAYVKTFQGPATGIVVERERMDK 165