BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0017.p (308 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001203769.1| RuBisCO operon transcriptional regulatory pr... 479 e-133 ref|YP_001242218.1| LysR family transcriptional regulator [Brady... 479 e-133 ref|NP_769220.1| transcriptional regulator [Bradyrhizobium japon... 413 e-113 ref|YP_780292.1| LysR family transcriptional regulator [Rhodopse... 411 e-113 ref|YP_531207.1| LysR family transcriptional regulator [Rhodopse... 408 e-112 >ref|YP_001203769.1| RuBisCO operon transcriptional regulatory protein [Bradyrhizobium sp. ORS 278] emb|CAL75532.1| RuBisCO operon transcriptional regulatory protein, LysR family [Bradyrhizobium sp. ORS 278] Length = 306 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 228/305 (74%), Positives = 267/305 (87%) Query: 1 MAGNFSRDLTIRQLRALSTLHEAGSITSAANRLNLTQPAVTLQLRNLQALAGLPLIQRTG 60 M+ +F+RDLTIRQLRAL + +GS+TSAA RLNLTQPAVTLQ+RNLQ LAGLPLIQRT Sbjct: 1 MSRHFARDLTIRQLRALVAVQNSGSVTSAAGRLNLTQPAVTLQIRNLQELAGLPLIQRTT 60 Query: 61 DGMALTDAGAHVLTLVERIEAALKDCEQSLDMIAGRSGGRVAMGAVSTAKYFVPFAIAAF 120 DGM LT+AG VL L ER+EAAL+DCEQ+LD++AGRSGGRVA+GAVSTAKYFVPFAIA F Sbjct: 61 DGMILTEAGRSVLALAERVEAALQDCEQALDILAGRSGGRVAIGAVSTAKYFVPFAIAEF 120 Query: 121 SRRFPKIEVTLRIGNREEIRDALRGYDLDIAVMGRPPADVEVEMKPLGRHPHFIIAAPDH 180 SRRFPKI+VTLRIGNR+ +R+ALRGYDLDIA+MGRPPAD+ V+M+P G+HPH IIA +H Sbjct: 121 SRRFPKIDVTLRIGNRDSLREALRGYDLDIAIMGRPPADIPVDMRPFGKHPHIIIAPANH 180 Query: 181 RLARRRHVAPSELANETFITREQGSGTRMLMQQYFERVGLEPKLGMAMDSNETIKQAVMA 240 + ARR+ +A +LA E FITRE GSGTR+LM+ +F+R GL+PK M MDSNETIKQAV+A Sbjct: 181 KFARRKRIAAEDLAEEVFITREPGSGTRLLMESFFDRHGLQPKTSMEMDSNETIKQAVIA 240 Query: 241 GLGIAFISQHTVFHELEDGRLVVLKVKGLPIVRQWHAIRRTDKILLPPAQAMLDFLGKEG 300 GLGIAFISQHTV HEL +GRLV LKV GLPI+RQWHA+RR DK+LLPPAQAMLDFLGKEG Sbjct: 241 GLGIAFISQHTVAHELGEGRLVTLKVVGLPIIRQWHAVRRADKLLLPPAQAMLDFLGKEG 300 Query: 301 WRYLP 305 R+LP Sbjct: 301 ARFLP 305 >ref|YP_001242218.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ38312.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1] Length = 306 Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust. Identities = 228/305 (74%), Positives = 265/305 (86%) Query: 1 MAGNFSRDLTIRQLRALSTLHEAGSITSAANRLNLTQPAVTLQLRNLQALAGLPLIQRTG 60 M+ FSRDLTIRQLRAL + +GS+TSAA RL+LTQPAVTLQ+RNLQ LAGLPLIQRT Sbjct: 1 MSRRFSRDLTIRQLRALVAVQNSGSVTSAAGRLHLTQPAVTLQIRNLQELAGLPLIQRTA 60 Query: 61 DGMALTDAGAHVLTLVERIEAALKDCEQSLDMIAGRSGGRVAMGAVSTAKYFVPFAIAAF 120 DGM LT+AG VL L ER+EAAL DCEQ+LD++AGRSGGRVA+GAVSTAKYFVPFAIA F Sbjct: 61 DGMILTEAGLSVLALAERVEAALLDCEQALDILAGRSGGRVAIGAVSTAKYFVPFAIAEF 120 Query: 121 SRRFPKIEVTLRIGNREEIRDALRGYDLDIAVMGRPPADVEVEMKPLGRHPHFIIAAPDH 180 SRRFPKI+VTLRIGNR+ +R+ALRGYDLDIA+MGRPPAD+ V+M+P G+HPH IIA H Sbjct: 121 SRRFPKIDVTLRIGNRDSLREALRGYDLDIAIMGRPPADIPVDMRPFGQHPHIIIAPAGH 180 Query: 181 RLARRRHVAPSELANETFITREQGSGTRMLMQQYFERVGLEPKLGMAMDSNETIKQAVMA 240 RLARR+ +A +LA+E FITRE GSGTR+LM+ +FE+ GL PK M MDSNETIKQAV+A Sbjct: 181 RLARRKRIAAEDLADEVFITREPGSGTRLLMETFFEKKGLHPKTSMEMDSNETIKQAVIA 240 Query: 241 GLGIAFISQHTVFHELEDGRLVVLKVKGLPIVRQWHAIRRTDKILLPPAQAMLDFLGKEG 300 GLGIAFISQHTV HEL +GRLV+L+V GLPI+RQWHA+RR DK+LLPPAQAMLDF GKEG Sbjct: 241 GLGIAFISQHTVSHELSEGRLVILRVTGLPIIRQWHAVRRADKLLLPPAQAMLDFFGKEG 300 Query: 301 WRYLP 305 R+LP Sbjct: 301 ARFLP 305 >ref|NP_769220.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gb|AAN61143.1| CbbR [Bradyrhizobium japonicum] dbj|BAC47845.1| cbbR [Bradyrhizobium japonicum USDA 110] Length = 325 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 199/300 (66%), Positives = 243/300 (81%) Query: 7 RDLTIRQLRALSTLHEAGSITSAANRLNLTQPAVTLQLRNLQALAGLPLIQRTGDGMALT 66 R LTIRQLR+L+ L GS+T+A+ L LTQPAVT QLR LQ LAGLPL+QRTGDGM LT Sbjct: 19 RHLTIRQLRSLAALSAKGSVTAASGHLGLTQPAVTQQLRQLQDLAGLPLVQRTGDGMLLT 78 Query: 67 DAGAHVLTLVERIEAALKDCEQSLDMIAGRSGGRVAMGAVSTAKYFVPFAIAAFSRRFPK 126 +AG VL L ER+EAA+ DC+ +LD++AGR+GG V +GAVSTAKYFVP AIAAF++R+PK Sbjct: 79 EAGKEVLALAERVEAAIMDCQGALDLLAGRTGGTVHLGAVSTAKYFVPHAIAAFTKRYPK 138 Query: 127 IEVTLRIGNREEIRDALRGYDLDIAVMGRPPADVEVEMKPLGRHPHFIIAAPDHRLARRR 186 IE+ L IGNREEIR+A+ GYDLD AVMGRPPADV V+++ LGR+PH I+A H L + Sbjct: 139 IEIRLTIGNREEIREAMHGYDLDFAVMGRPPADVSVDVRQLGRNPHIIVARKGHWLEKDS 198 Query: 187 HVAPSELANETFITREQGSGTRMLMQQYFERVGLEPKLGMAMDSNETIKQAVMAGLGIAF 246 ++ ++L +ETF+TRE GSGTR LM+ F++ LEP +GM M SNETIKQAV+AGLGIAF Sbjct: 199 GLSLTDLVHETFLTREPGSGTRTLMEGMFQKSDLEPVIGMEMSSNETIKQAVIAGLGIAF 258 Query: 247 ISQHTVFHELEDGRLVVLKVKGLPIVRQWHAIRRTDKILLPPAQAMLDFLGKEGWRYLPN 306 IS HTV HEL +GRL+VL V GLPIVRQW+ IRR+DK+LLPPAQAM DFLG EG YLP+ Sbjct: 259 ISAHTVAHELAEGRLIVLDVAGLPIVRQWYVIRRSDKVLLPPAQAMFDFLGSEGSNYLPD 318 >ref|YP_780292.1| LysR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gb|ABJ05312.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris BisA53] Length = 322 Score = 411 bits (1056), Expect = e-113, Method: Compositional matrix adjust. Identities = 201/308 (65%), Positives = 245/308 (79%), Gaps = 1/308 (0%) Query: 1 MAGNFSRDLTIRQLRALSTLHEAGSITSAANRLNLTQPAVTLQLRNLQALAGLPLIQRTG 60 MA F R ++IRQLRAL+ L GSIT+AAN+L+LTQPAVTLQLRNLQ +AGLPLIQRT Sbjct: 1 MAKQF-RTVSIRQLRALAALSANGSITAAANKLHLTQPAVTLQLRNLQDIAGLPLIQRTS 59 Query: 61 DGMALTDAGAHVLTLVERIEAALKDCEQSLDMIAGRSGGRVAMGAVSTAKYFVPFAIAAF 120 DGM LTDAG VL L ERIEAA+ CE SLDMIAG++ GR+++GAVSTAKYFVPFAI+AF Sbjct: 60 DGMLLTDAGREVLALSERIEAAIAACETSLDMIAGKTAGRISIGAVSTAKYFVPFAISAF 119 Query: 121 SRRFPKIEVTLRIGNREEIRDALRGYDLDIAVMGRPPADVEVEMKPLGRHPHFIIAAPDH 180 + PK+++ L IGNR+EI +ALR Y+LDIA+MGRPP D+E+ + +G HPH IIA H Sbjct: 120 QKLHPKVDIRLSIGNRQEIGNALRNYELDIAIMGRPPVDMEMAVHLIGDHPHVIIAPTAH 179 Query: 181 RLARRRHVAPSELANETFITREQGSGTRMLMQQYFERVGLEPKLGMAMDSNETIKQAVMA 240 RLAR+ + +ELA ETF+TRE GSGTR LM+Q FE G+ P +GM M SNETIKQAV+A Sbjct: 180 RLARKLRLPVTELAGETFLTREPGSGTRSLMEQLFESAGIRPSIGMEMSSNETIKQAVIA 239 Query: 241 GLGIAFISQHTVFHELEDGRLVVLKVKGLPIVRQWHAIRRTDKILLPPAQAMLDFLGKEG 300 GLGIAFIS HTV EL++ RLV+L V GLP++RQW + RTDK+LLPPAQAMLDFLG +G Sbjct: 240 GLGIAFISAHTVATELDERRLVILDVVGLPVIRQWFVVSRTDKVLLPPAQAMLDFLGAKG 299 Query: 301 WRYLPNSN 308 +LP + Sbjct: 300 AEFLPRTQ 307 >ref|YP_531207.1| LysR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gb|ABD86888.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris BisB18] Length = 322 Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust. Identities = 196/302 (64%), Positives = 242/302 (80%) Query: 7 RDLTIRQLRALSTLHEAGSITSAANRLNLTQPAVTLQLRNLQALAGLPLIQRTGDGMALT 66 R ++IRQLRAL+ L +GSIT+AAN+L+LTQPAVTLQLRNLQALAGLPLIQR DGMALT Sbjct: 6 RTVSIRQLRALAALAGSGSITAAANKLHLTQPAVTLQLRNLQALAGLPLIQRKSDGMALT 65 Query: 67 DAGAHVLTLVERIEAALKDCEQSLDMIAGRSGGRVAMGAVSTAKYFVPFAIAAFSRRFPK 126 DAGA VL L ERIEAA+ CE SLDMIAG++ GR+++GAVSTAKYFVPF I+AF + PK Sbjct: 66 DAGAEVLALCERIEAAIAACETSLDMIAGKTAGRISIGAVSTAKYFVPFMISAFQKLHPK 125 Query: 127 IEVTLRIGNREEIRDALRGYDLDIAVMGRPPADVEVEMKPLGRHPHFIIAAPDHRLARRR 186 I+V L IGNREE+ +AL+GY+LDIA+MGRPP +++++ +G HPH IIA HRLAR+ Sbjct: 126 IDVKLSIGNREEVSNALKGYELDIAIMGRPPVGIDMDVHLIGDHPHVIIAPTAHRLARKH 185 Query: 187 HVAPSELANETFITREQGSGTRMLMQQYFERVGLEPKLGMAMDSNETIKQAVMAGLGIAF 246 +A ELA ETF+TRE GSGTR LM+Q FE + P +GM M SNETIKQAV+AGLGIAF Sbjct: 186 RIALGELAKETFLTREPGSGTRSLMEQLFEAANIRPTIGMEMSSNETIKQAVIAGLGIAF 245 Query: 247 ISQHTVFHELEDGRLVVLKVKGLPIVRQWHAIRRTDKILLPPAQAMLDFLGKEGWRYLPN 306 +S HTV EL++ RLV+L V GLP+VRQW + R DK+LLPPA+AMLDF +G ++LP Sbjct: 246 LSAHTVATELDERRLVILDVVGLPVVRQWFVLSRKDKVLLPPARAMLDFFSAKGAQFLPR 305 Query: 307 SN 308 + Sbjct: 306 TQ 307