BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0016.p (548 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_531560.1| multi-sensor hybrid histidine kinase [Rhodopseu... 518 e-144 ref|YP_780714.1| multi-sensor hybrid histidine kinase [Rhodopseu... 508 e-141 ref|YP_001242091.1| sensor histidine kinase [Bradyrhizobium sp. ... 496 e-138 ref|YP_001207640.1| sensor histidine kinase [Bradyrhizobium sp. ... 495 e-138 ref|YP_001243575.1| sensor histidine kinase [Bradyrhizobium sp. ... 491 e-137 >ref|YP_531560.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] gb|ABD87241.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] Length = 926 Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust. Identities = 257/401 (64%), Positives = 318/401 (79%), Gaps = 6/401 (1%) Query: 138 EQMEAEIFMRAREVEAAREQLEAEQKLRQVQKMEAVGHLSGGIAHDFNNILTVITGLIDI 197 E A + + R+V A +E E++L Q QK++A+G L+GG+AHDFNN LTVITG +I Sbjct: 512 EGARAGVVVVYRDVTATKE---IERQLHQSQKLDAIGQLTGGVAHDFNNTLTVITGTAEI 568 Query: 198 LAEAVEHDPALSSVAKMITDAAFRGAEVTKHLLAFSRLQPLQPREANLNTLVQDTARLLR 257 L E++ P L +AKMI DAA RGAE+TKHLLAF+R QPLQPR ++NTLV +TA+LLR Sbjct: 569 LFESLADRPNLQQIAKMIDDAAGRGAELTKHLLAFARRQPLQPRNVDVNTLVLNTAQLLR 628 Query: 258 PSLGEQIEIDTALEPDAWSAFIDPNHMATALLNLAVNARDAMPDGGKLMLETSNVILDEV 317 P+LGEQIEI++ L DA A IDP+ ++TALLNLAVNARDAMP+GGKL LET NV+LDE Sbjct: 629 PTLGEQIEIESMLGNDAEPAHIDPSQLSTALLNLAVNARDAMPNGGKLTLETGNVVLDET 688 Query: 318 YAVANPDVRAGEYVMVAVSDTGGGIPAGIRDKVFEPFFTTKDTGKGTGLGLSMVYGFIKQ 377 YA ANP+V G YVM+AVSD+G GI A I DKVFEPFFTTKD GKGTGLGLSMVYGF+KQ Sbjct: 689 YAHANPEVTPGPYVMIAVSDSGTGISAAILDKVFEPFFTTKDVGKGTGLGLSMVYGFVKQ 748 Query: 378 SNGHLKIYSEEGHGTSIKLYLPRSSGDMIDVEPPPPVDTRGGNESILVVEDDPLVRNYVS 437 SNGH+KIYSEEG+GT+IKLYLPR+S D ++ P P+ +GG+E++LVVEDD +VRN+V Sbjct: 749 SNGHIKIYSEEGYGTTIKLYLPRASADAEELAPTAPI--KGGSETVLVVEDDAMVRNFVV 806 Query: 438 AQLEQLGYRTMVTANGPEALAAVDKGFVCDVLFTDVIMSGGMNGRQVADAVIAKLPSVRV 497 QL LGY+T+ ANG E LA +D G D+LFTDVIM G+NGRQ+A+AV + P+ +V Sbjct: 807 TQLRSLGYKTLTAANGAETLAQIDAGATFDLLFTDVIMP-GLNGRQLAEAVKQRRPATKV 865 Query: 498 LFTSGYTEDAIIHHGRLDPDVTLLPKPYRKSDLARMIRQVL 538 L+TSGYTE+AI+HHGRLDP V LLPKPYRKS+LAR+IR L Sbjct: 866 LYTSGYTENAIVHHGRLDPGVLLLPKPYRKSELARLIRAAL 906 >ref|YP_780714.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] gb|ABJ05734.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] Length = 931 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 255/392 (65%), Positives = 306/392 (78%), Gaps = 9/392 (2%) Query: 149 REVEAAREQLEAEQKLRQVQKMEAVGHLSGGIAHDFNNILTVITGLIDILAEAVEHDPAL 208 R+V A++E E+ LRQ QK++A+G L+GGIAHDFNN LTVITG +IL + + P L Sbjct: 522 RDVTASKE---TERLLRQSQKLDAIGQLTGGIAHDFNNTLTVITGTAEILVDNLADRPDL 578 Query: 209 SSVAKMITDAAFRGAEVTKHLLAFSRLQPLQPREANLNTLVQDTARLLRPSLGEQIEIDT 268 +AK+I +AA RGAE+TKHLLAF+R QPLQPR ++NTLV DTARLLRP+LGE IEI++ Sbjct: 579 LHIAKLIDEAAGRGAELTKHLLAFARRQPLQPRNVDVNTLVLDTARLLRPTLGEHIEIES 638 Query: 269 ALEPDAWSAFIDPNHMATALLNLAVNARDAMPDGGKLMLETSNVILDEVYAVANPDVRAG 328 L DA A +DP+ ++TALLNLAVNARDAMP GGKL LETSNV+LDE YA NP + G Sbjct: 639 MLGNDAEPAHVDPSQLSTALLNLAVNARDAMPGGGKLTLETSNVVLDEAYAHNNPGAQPG 698 Query: 329 EYVMVAVSDTGGGIPAGIRDKVFEPFFTTKDTGKGTGLGLSMVYGFIKQSNGHLKIYSEE 388 YVM+AVSDTG GI A RDKVFEPFFTTK+ GKGTGLGLSMVYGF+ QSNGH+KIYSEE Sbjct: 699 AYVMIAVSDTGTGIAASARDKVFEPFFTTKEVGKGTGLGLSMVYGFVNQSNGHIKIYSEE 758 Query: 389 GHGTSIKLYLPR--SSGDMIDVEPPPPVDTRGGNESILVVEDDPLVRNYVSAQLEQLGYR 446 G+GT+IKLYLPR + +M+ V P GG E+ILVVEDD +VRN+V AQL LGYR Sbjct: 759 GYGTTIKLYLPRADAQAEMLPVAEP----IEGGTETILVVEDDAMVRNFVVAQLRSLGYR 814 Query: 447 TMVTANGPEALAAVDKGFVCDVLFTDVIMSGGMNGRQVADAVIAKLPSVRVLFTSGYTED 506 T A+G AL VD G D+LFTDVIM GGMNGRQ+ADAV+ + P ++VL+TSGYTE+ Sbjct: 815 TYTAASGAAALTEVDSGASFDLLFTDVIMPGGMNGRQLADAVLQRRPGIKVLYTSGYTEN 874 Query: 507 AIIHHGRLDPDVTLLPKPYRKSDLARMIRQVL 538 AI+HHGRLD V LLPKPYRKS+LARM+R L Sbjct: 875 AIVHHGRLDAGVFLLPKPYRKSELARMVRAAL 906 >ref|YP_001242091.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1] gb|ABQ38185.1| putative sensor histidine kinase with a response regulator receiver domain [Bradyrhizobium sp. BTAi1] Length = 490 Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust. Identities = 254/418 (60%), Positives = 315/418 (75%), Gaps = 19/418 (4%) Query: 127 DQLTDRLRERTEQMEAEIFMRAREVEAAREQLEAEQKLRQVQKMEAVGHLSGGIAHDFNN 186 DQL + +R+R + + R +E+EA E ++RQ QKMEA+G L+GG+AHDFNN Sbjct: 84 DQLEEEIRQR--RAAEAMVRRFQEIEAN------EAQVRQAQKMEAIGQLTGGVAHDFNN 135 Query: 187 ILTVITGLIDILAEAVEHDPALSSVAKMITDAAFRGAEVTKHLLAFSRLQPLQPREANLN 246 ILTVITG I+ILA+AV+ P L+S+A MI+ AA RGA++T+HLLAFSR QPLQPR ++N Sbjct: 136 ILTVITGTIEILADAVKDRPQLASIANMISAAAERGADLTRHLLAFSRRQPLQPRATDIN 195 Query: 247 TLVQDTARLLRPSLGEQIEIDTALEPDAWSAFIDPNHMATALLNLAVNARDAMPDGGKLM 306 LV D ARLLRP+LGEQIEI++ L D+ A IDP+ ++TA+LNLA+NARDAMPDGGKL Sbjct: 196 ALVVDAARLLRPTLGEQIEIESMLAHDSAPALIDPSQLSTAILNLALNARDAMPDGGKLT 255 Query: 307 LETSNVILDEVYAVANPDVRAGEYVMVAVSDTGGGIPAGIRDKVFEPFFTTKDTGKGTGL 366 LET NV+LDE YA N DV+ G YVM+AVSDTG GIP + DKVFEPFFTTKD GKG+GL Sbjct: 256 LETKNVVLDEDYARLNNDVKPGNYVMIAVSDTGQGIPPALMDKVFEPFFTTKDAGKGSGL 315 Query: 367 GLSMVYGFIKQSNGHLKIYSEEGHGTSIKLYLPRSSGDMIDVEPPPPVDTRG------GN 420 GLSMVYGF+KQSNGH+KIYSE HGT++KLYLPR++ P PV G G+ Sbjct: 316 GLSMVYGFVKQSNGHVKIYSEPDHGTTVKLYLPRAAE-----APVLPVADTGRPAVARGD 370 Query: 421 ESILVVEDDPLVRNYVSAQLEQLGYRTMVTANGPEALAAVDKGFVCDVLFTDVIMSGGMN 480 E+ILVVEDD LVR+YV AQ+ +LGYRT+ +N E LA +D D+LFTDVI+ GGMN Sbjct: 371 ETILVVEDDALVRDYVVAQVRRLGYRTLSASNAVEGLALIDNPERIDLLFTDVIIPGGMN 430 Query: 481 GRQVADAVIAKLPSVRVLFTSGYTEDAIIHHGRLDPDVTLLPKPYRKSDLARMIRQVL 538 GRQ+A + P ++VL+TSGYTE+AI+HHGRLD DV LL KPY +DLARMIR L Sbjct: 431 GRQLALEAEKRRPGLKVLYTSGYTENAIVHHGRLDADVLLLAKPYLSADLARMIRTAL 488 >ref|YP_001207640.1| sensor histidine kinase [Bradyrhizobium sp. ORS 278] emb|CAL79423.1| putative sensor histidine kinase with a response regulator receiver domain [Bradyrhizobium sp. ORS 278] Length = 490 Score = 495 bits (1274), Expect = e-138, Method: Compositional matrix adjust. Identities = 252/411 (61%), Positives = 316/411 (76%), Gaps = 6/411 (1%) Query: 133 LRERTEQMEAEIFMR-AREVEAAR-EQLEA-EQKLRQVQKMEAVGHLSGGIAHDFNNILT 189 L++ Q+E E+ R A E R +++EA E ++RQ QKMEA+G L+GG+AHDFNNILT Sbjct: 79 LQKAYAQLEEEVRQRRAAEAMVRRFQEIEANEAQVRQAQKMEAIGQLTGGVAHDFNNILT 138 Query: 190 VITGLIDILAEAVEHDPALSSVAKMITDAAFRGAEVTKHLLAFSRLQPLQPREANLNTLV 249 VITG I+ILA+AV+ P L+ +A MI+ AA RGA++T+HLLAFSR QPLQPR ++N LV Sbjct: 139 VITGTIEILADAVKDKPQLAGIAAMISAAAERGADLTRHLLAFSRRQPLQPRATDINALV 198 Query: 250 QDTARLLRPSLGEQIEIDTALEPDAWSAFIDPNHMATALLNLAVNARDAMPDGGKLMLET 309 D ARLLRP+LGEQIEI++ L D+ A IDP+ ++TA+LNLA+NARDAMPDGGKL LET Sbjct: 199 VDAARLLRPTLGEQIEIESMLSHDSAPALIDPSQLSTAILNLAINARDAMPDGGKLTLET 258 Query: 310 SNVILDEVYAVANPDVRAGEYVMVAVSDTGGGIPAGIRDKVFEPFFTTKDTGKGTGLGLS 369 N+ LDE YA N D + G YVM+AVSDTG GIPA + DKVFEPFFTTKD GKG+GLGLS Sbjct: 259 KNITLDEDYARLNRDAKPGGYVMIAVSDTGQGIPASLLDKVFEPFFTTKDVGKGSGLGLS 318 Query: 370 MVYGFIKQSNGHLKIYSEEGHGTSIKLYLPR--SSGDMIDVEPPPPVDTRGGNESILVVE 427 MVYGF+KQSNGH+KIYSE+GHGT++KLYLPR S+ ++ E P R G+E+IL+VE Sbjct: 319 MVYGFVKQSNGHVKIYSEQGHGTTVKLYLPRAASAPELPAAESGRPAVAR-GDETILIVE 377 Query: 428 DDPLVRNYVSAQLEQLGYRTMVTANGPEALAAVDKGFVCDVLFTDVIMSGGMNGRQVADA 487 DD LVR+YV AQ+ +LGYRT+ +N E LA +D D+LFTDVI+ GG NGRQ+A Sbjct: 378 DDALVRDYVVAQVRRLGYRTLSASNAAEGLAIIDSPERIDLLFTDVIIPGGKNGRQLAIE 437 Query: 488 VIAKLPSVRVLFTSGYTEDAIIHHGRLDPDVTLLPKPYRKSDLARMIRQVL 538 + P ++VL+TSGYTE+AI+HHGRLD DV LL KPY +DLARMIR L Sbjct: 438 AEKRRPGLKVLYTSGYTENAIVHHGRLDADVLLLAKPYLSADLARMIRTAL 488 >ref|YP_001243575.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1] gb|ABQ39669.1| putative sensor histidine kinase with a response regulator receiver domain [Bradyrhizobium sp. BTAi1] Length = 529 Score = 491 bits (1265), Expect = e-137, Method: Compositional matrix adjust. Identities = 245/412 (59%), Positives = 308/412 (74%), Gaps = 9/412 (2%) Query: 128 QLTDRLRERTEQMEAEIFMRAREVEAAREQLEAEQKLRQVQKMEAVGHLSGGIAHDFNNI 187 QL + R+R + + R +E+EA E ++RQ QKMEA+G L+GG+AHDFNNI Sbjct: 124 QLEEETRQR--RTAEAMVKRFQEIEAT------EAQVRQAQKMEAIGQLTGGVAHDFNNI 175 Query: 188 LTVITGLIDILAEAVEHDPALSSVAKMITDAAFRGAEVTKHLLAFSRLQPLQPREANLNT 247 LTVITG I+ILAEAV+ P L + +I AA RGA++TKHLLAF+R QPLQPR ++N Sbjct: 176 LTVITGTIEILAEAVKDRPQLVQITSLINSAAARGADLTKHLLAFARRQPLQPRSVDING 235 Query: 248 LVQDTARLLRPSLGEQIEIDTALEPDAWSAFIDPNHMATALLNLAVNARDAMPDGGKLML 307 LV DTARLLR +LGEQIEI++ L D+ A IDP+ ++TA+LNLA+NARDAMP+GGKL L Sbjct: 236 LVVDTARLLRRTLGEQIEIESMLAHDSAPAMIDPSQLSTAILNLALNARDAMPNGGKLTL 295 Query: 308 ETSNVILDEVYAVANPDVRAGEYVMVAVSDTGGGIPAGIRDKVFEPFFTTKDTGKGTGLG 367 ET NV+LD YA NP+V G YVM+AVSDTG GIPA + DKVFEPFFTTKD GKG GLG Sbjct: 296 ETKNVLLDAAYARMNPEVVPGNYVMIAVSDTGEGIPANLLDKVFEPFFTTKDVGKGVGLG 355 Query: 368 LSMVYGFIKQSNGHLKIYSEEGHGTSIKLYLPRSSGDM-IDVEPPPPVDTRGGNESILVV 426 LSMVYGF+KQSNGH+KIYSE HGTS+KLYLP+++ D + + G+E+IL+V Sbjct: 356 LSMVYGFVKQSNGHIKIYSEPEHGTSVKLYLPQATADSDLLLSETSTAGMERGDETILIV 415 Query: 427 EDDPLVRNYVSAQLEQLGYRTMVTANGPEALAAVDKGFVCDVLFTDVIMSGGMNGRQVAD 486 EDD LVR YV+AQ+++LGY T+ + EALA +D D+LFTD+IM GGMNGRQ+A Sbjct: 416 EDDSLVREYVTAQIKRLGYTTLAASKADEALAIIDSATRIDLLFTDIIMPGGMNGRQLAI 475 Query: 487 AVIAKLPSVRVLFTSGYTEDAIIHHGRLDPDVTLLPKPYRKSDLARMIRQVL 538 + + P +RVL+TSGYTE+AI+HHGRLD V LL KPY+ +DLARMIR L Sbjct: 476 EAVRRRPDLRVLYTSGYTENAIVHHGRLDAGVLLLTKPYQSADLARMIRTAL 527