BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0015.p (234 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774597.1| transcriptional regulator [Bradyrhizobium japon... 197 9e-49 ref|YP_765351.1| TetR family transcriptional regulator [Rhizobiu... 196 3e-48 ref|YP_002978511.1| transcriptional regulator, TetR family [Rhiz... 192 2e-47 ref|ZP_03513711.1| multidrug efflux transcriptional regulator pr... 191 1e-46 ref|YP_001984973.1| TetR family multidrug efflux transcriptional... 187 1e-45 >ref|NP_774597.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC53222.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 217 Score = 197 bits (502), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 107/204 (52%), Positives = 142/204 (69%) Query: 17 RGRGRPQLRSDDETRALIYDAARREFSERGFAAANIADVACRAGVSTKTLYRLIPTKLAL 76 R RGRP +RSD+ET+ ++ +AAR+ F+ G+AA + ++A RAG+STKTLYRL P K AL Sbjct: 11 RPRGRPPVRSDEETKGIVLEAARQAFAGDGYAATSTEELARRAGISTKTLYRLFPGKAAL 70 Query: 77 FEGTVTDRMDRFISAVNLGACDGRDIAAALEAALSSCGELILDAEVIALQRIILADSDKF 136 FE DR++R +SAV+L A D DI L AAL +C +L LD EV+ALQR++L +S F Sbjct: 71 FEAMCADRLERLLSAVDLQASDEVDIEKGLRAALLACADLALDPEVVALQRMVLQESAAF 130 Query: 137 PDIAEMFYEKAMQRTLGALAAWLSVQQRRGRIAVDDAQAAAGMLLGMLVFQPQRDVMYGH 196 P++A FY+ + RT+ ALA WL Q ++ RIA+DD + AAGML+GM+ PQR +YG Sbjct: 131 PELAAHFYKNGISRTVTALAGWLRAQVKKKRIALDDVEEAAGMLIGMVASAPQRAAIYGG 190 Query: 197 RPPPSRAQIEARAKACAALFLSGC 220 PSR IE R K CAALFL GC Sbjct: 191 LALPSRKDIERRVKTCAALFLDGC 214 >ref|YP_765351.1| TetR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] emb|CAK03769.1| putative TetR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 215 Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 103/210 (49%), Positives = 138/210 (65%), Gaps = 6/210 (2%) Query: 16 RRGRGRPQLRSDDETRALIYDAARREFSERGFAAANIADVACRAGVSTKTLYRLIPTKLA 75 +R RGRPQLR DD+TR LI +AA +F + G+AAA+IA +A AGVSTKTLYRL PTK Sbjct: 9 KRPRGRPQLRCDDDTRNLIVEAADTQFHDNGYAAASIATIAQEAGVSTKTLYRLFPTKAD 68 Query: 76 LFEGTVTDRMDRFISAVN---LGACDGRDIAAALEAALSSCGELILDAEVIALQRIILAD 132 LF V++R+ RF+ A++ L A D RD LE L++ G L L + + + R+++A+ Sbjct: 69 LFASVVSERISRFLLALDPPMLAAADLRD---GLERMLTAYGMLTLSEDTVTIMRLVIAE 125 Query: 133 SDKFPDIAEMFYEKAMQRTLGALAAWLSVQQRRGRIAVDDAQAAAGMLLGMLVFQPQRDV 192 SD+FP+IA FYE+A+ RT + WL +Q RG IA+DD A GML GM+ +PQR Sbjct: 126 SDRFPEIATSFYEQAILRTNALMENWLRLQVDRGLIALDDPHLACGMLRGMMTMEPQRAA 185 Query: 193 MYGHRPPPSRAQIEARAKACAALFLSGCAV 222 + PP I+ARAK CA LFL GCA+ Sbjct: 186 ILRQETPPKIEAIQARAKMCADLFLKGCAL 215 >ref|YP_002978511.1| transcriptional regulator, TetR family [Rhizobium leguminosarum bv. trifolii WSM1325] gb|ACS60760.1| transcriptional regulator, TetR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 215 Score = 192 bits (489), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 102/210 (48%), Positives = 137/210 (65%), Gaps = 6/210 (2%) Query: 16 RRGRGRPQLRSDDETRALIYDAARREFSERGFAAANIADVACRAGVSTKTLYRLIPTKLA 75 +R RGRPQ+R DD+TR LI +AA +F + G+AAA+IA +A AGVSTKTLYRL PTK Sbjct: 9 KRPRGRPQIRCDDDTRNLIVEAADTQFHDNGYAAASIATIAQEAGVSTKTLYRLFPTKAD 68 Query: 76 LFEGTVTDRMDRFISAVN---LGACDGRDIAAALEAALSSCGELILDAEVIALQRIILAD 132 LF V++R+ RF+ A++ L A D RD LE L + G L L + + + R+++A+ Sbjct: 69 LFASVVSERISRFLLALDPPMLAAADLRD---GLERMLMAYGMLTLSEDTVTIMRLVIAE 125 Query: 133 SDKFPDIAEMFYEKAMQRTLGALAAWLSVQQRRGRIAVDDAQAAAGMLLGMLVFQPQRDV 192 SD+FP+IA FYE+A+ RT + WL +Q RG IA+DD A GML GM+ +PQR Sbjct: 126 SDRFPEIATSFYERAILRTNALMEDWLRLQVDRGLIALDDPHLACGMLRGMMAMEPQRAA 185 Query: 193 MYGHRPPPSRAQIEARAKACAALFLSGCAV 222 + PPP I+ARAK A LFL GCA+ Sbjct: 186 ILRQEPPPKIEAIQARAKMSADLFLKGCAL 215 >ref|ZP_03513711.1| multidrug efflux transcriptional regulator protein, TetR family [Rhizobium etli 8C-3] Length = 215 Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 102/207 (49%), Positives = 138/207 (66%) Query: 16 RRGRGRPQLRSDDETRALIYDAARREFSERGFAAANIADVACRAGVSTKTLYRLIPTKLA 75 +R RGRPQ+R DD+TR++I +AA R+F E G+AAA+IA +A AGVSTKTLYRL PTK Sbjct: 9 KRPRGRPQIRCDDDTRSVIIEAANRQFHESGYAAASIAAIAQAAGVSTKTLYRLFPTKAD 68 Query: 76 LFEGTVTDRMDRFISAVNLGACDGRDIAAALEAALSSCGELILDAEVIALQRIILADSDK 135 LF +T+R RF+ A++ G D+ LE L++ G L L + I + R+++++SD+ Sbjct: 69 LFSEMITERTGRFLIALDPGTLAVADLRQGLERMLTAYGMLTLSLDTITVTRLVISESDR 128 Query: 136 FPDIAEMFYEKAMQRTLGALAAWLSVQQRRGRIAVDDAQAAAGMLLGMLVFQPQRDVMYG 195 FP+IA FYEKA+ RT + WL Q G IA+DD AA GML GM++ +PQR M Sbjct: 129 FPEIATSFYEKAIVRTNTLMEDWLRRQIDHGLIALDDPHAACGMLRGMMIMEPQRAAMLR 188 Query: 196 HRPPPSRAQIEARAKACAALFLSGCAV 222 +PPP +I ARAK C LFL GCA+ Sbjct: 189 QQPPPGVEEIAARAKMCTNLFLKGCAL 215 >ref|YP_001984973.1| TetR family multidrug efflux transcriptional regulator [Rhizobium etli CIAT 652] gb|ACE94423.1| multidrug efflux transcriptional regulator protein, TetR family [Rhizobium etli CIAT 652] Length = 226 Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 101/207 (48%), Positives = 137/207 (66%) Query: 16 RRGRGRPQLRSDDETRALIYDAARREFSERGFAAANIADVACRAGVSTKTLYRLIPTKLA 75 +R RGRPQ+R DD+TR++I +AA R+F E G+AAA+IA +A AGVSTKTLYRL PTK Sbjct: 18 KRPRGRPQIRCDDDTRSVIIEAANRQFHESGYAAASIAAIAQAAGVSTKTLYRLFPTKAD 77 Query: 76 LFEGTVTDRMDRFISAVNLGACDGRDIAAALEAALSSCGELILDAEVIALQRIILADSDK 135 LF +T+R RF+ A++ D+ LE L++ G L L + I + R+++++SD+ Sbjct: 78 LFSEMITERTGRFLIALDPATLAVADLRQGLERMLTAYGMLTLSLDTITVTRLVISESDR 137 Query: 136 FPDIAEMFYEKAMQRTLGALAAWLSVQQRRGRIAVDDAQAAAGMLLGMLVFQPQRDVMYG 195 FP+IA FYEKA+ RT + WL Q G IA+DD AA GML GM++ +PQR M Sbjct: 138 FPEIATSFYEKAIVRTNMLMEDWLRRQIAHGLIALDDPHAACGMLRGMMIMEPQRAAMLR 197 Query: 196 HRPPPSRAQIEARAKACAALFLSGCAV 222 +PPP +I ARAK C LFL GCA+ Sbjct: 198 QQPPPGVEEIAARAKMCTDLFLKGCAL 224