BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0013.p (587 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002978509.1| drug resistance transporter, EmrB/QacA subfa... 562 e-158 ref|YP_765353.1| putative transmembrane transport protein [Rhizo... 561 e-157 ref|YP_002284240.1| drug resistance transporter, EmrB/QacA subfa... 548 e-154 ref|YP_001984971.1| multidrug efflux transporter protein [Rhizob... 543 e-152 ref|NP_774599.1| transport protein [Bradyrhizobium japonicum USD... 536 e-150 >ref|YP_002978509.1| drug resistance transporter, EmrB/QacA subfamily [Rhizobium leguminosarum bv. trifolii WSM1325] gb|ACS60758.1| drug resistance transporter, EmrB/QacA subfamily [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 529 Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust. Identities = 285/470 (60%), Positives = 345/470 (73%), Gaps = 59/470 (12%) Query: 10 SAAPRAAAVAADPNRASMAVWISIVAAMIGAFMAILNIQITNASLLNIEGGIGTGVDNGS 69 + A + AV AS WI+++A MIGAFMAILNIQITNASLL+IEGGIGTGVDNG+ Sbjct: 3 TIAATSIAVPQPKTGASTREWIAVLAGMIGAFMAILNIQITNASLLDIEGGIGTGVDNGA 62 Query: 70 WISTSYLIGEIVVIPLTDYLSRVFSFRKIIIGFATLFAIFSVACAFTHDLPSMIAMRGLQ 129 WISTSYLIGEIVVIPLT Y S VFSFR+ I+ + LF +FS+ CAF HDL +MI +RGLQ Sbjct: 63 WISTSYLIGEIVVIPLTAYFSNVFSFRRYILVNSVLFPLFSIGCAFAHDLGTMIVLRGLQ 122 Query: 130 GFFGGVLIPMAFTLVFTKLPKAQQPVGLAMFALAVTFAPAIGPTIGGYLTENYGWQTIFF 189 GF GGVLIPMAFT+V TKLPK QQP+GLA FAL+VTFAPAIGPTIGGYLTENYGWQTIFF Sbjct: 123 GFAGGVLIPMAFTMVLTKLPKHQQPLGLAAFALSVTFAPAIGPTIGGYLTENYGWQTIFF 182 Query: 190 VNVIPTAVMVITLYFTLERQPMQLHLLREGDWLGIVTMAIGLSSLQAVLEEGNKNDWFGS 249 +N IP+A+M + L TL++QPMQL LLREGDW GI++MAIGLS+LQ VLEEGNK DWF S Sbjct: 183 INAIPSAIMAVALALTLDKQPMQLGLLREGDWAGIISMAIGLSALQTVLEEGNKEDWFSS 242 Query: 250 PFVVRLSVIAAVALVAFLIVEFTVEKPLLNLRLLARRNFGFGMLANFLLGIALYGSVFIL 309 PF+V+LS++A V LVAF+ +E TVEKPL+ LRLL +R NF +G+A+ Sbjct: 243 PFIVKLSILAFVFLVAFIWIELTVEKPLVKLRLLKQR--------NFGIGVAVN------ 288 Query: 310 PQYLSRIQGYNAEQIGMVLAWTGLPQLVLIPLVPRLMQRFDPRIIISVGFALFGSVYLLP 369 + VG ALFG+VY+LP Sbjct: 289 ---------------------------------------------VLVGVALFGTVYILP 303 Query: 370 AYLGQVQRYNAEQIGQVLAWTGLPQLILIPLVPKLMQRFDPRFIAFTGMILFAVSSFMNI 429 YLGQVQRYNAEQIG VLAWTGLPQL+LIPLVP +M+RFD R+I F G+ +FA+S FMNI Sbjct: 304 QYLGQVQRYNAEQIGNVLAWTGLPQLLLIPLVPMMMKRFDARYIGFLGISIFAISCFMNI 363 Query: 430 AMSLDYSGDQFFVPNIVRAIGQAIMLAPLSAVSLGSVAPQDAAAASGISN 479 +S D +GDQF++PNIVRAIGQA++L P++A++ +AP DAAAASG++N Sbjct: 364 TLSADTAGDQFWIPNIVRAIGQALVLTPITAITTAGIAPSDAAAASGLTN 413 >ref|YP_765353.1| putative transmembrane transport protein [Rhizobium leguminosarum bv. viciae 3841] emb|CAK03771.1| putative transmembrane transport protein [Rhizobium leguminosarum bv. viciae 3841] Length = 529 Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust. Identities = 284/470 (60%), Positives = 345/470 (73%), Gaps = 59/470 (12%) Query: 10 SAAPRAAAVAADPNRASMAVWISIVAAMIGAFMAILNIQITNASLLNIEGGIGTGVDNGS 69 + A A AV AS WI+++A MIGAFMAILNIQITNASLL+IEGGIGTGVDNG+ Sbjct: 3 TIAATAIAVPQPKTGASTREWIAVLAGMIGAFMAILNIQITNASLLDIEGGIGTGVDNGA 62 Query: 70 WISTSYLIGEIVVIPLTDYLSRVFSFRKIIIGFATLFAIFSVACAFTHDLPSMIAMRGLQ 129 WISTSYLIGEIVVIPLT Y S VFSFR+ I+ + LF +FS+ CAF HDL +MI +RGLQ Sbjct: 63 WISTSYLIGEIVVIPLTAYFSNVFSFRRYILVNSVLFPLFSIGCAFAHDLGTMIVLRGLQ 122 Query: 130 GFFGGVLIPMAFTLVFTKLPKAQQPVGLAMFALAVTFAPAIGPTIGGYLTENYGWQTIFF 189 GF GGVLIPMAFT+V TKLPK QQP+GLA FAL+VTFAPAIGPTIGGYLTENYGWQTIFF Sbjct: 123 GFAGGVLIPMAFTMVLTKLPKHQQPLGLAAFALSVTFAPAIGPTIGGYLTENYGWQTIFF 182 Query: 190 VNVIPTAVMVITLYFTLERQPMQLHLLREGDWLGIVTMAIGLSSLQAVLEEGNKNDWFGS 249 +N +P+A+M + L TL++QPMQL LLREGDW GI++MAIGLS+LQ VLEEGNK DWF S Sbjct: 183 INAVPSAIMAVALALTLDKQPMQLGLLREGDWAGIISMAIGLSALQTVLEEGNKEDWFSS 242 Query: 250 PFVVRLSVIAAVALVAFLIVEFTVEKPLLNLRLLARRNFGFGMLANFLLGIALYGSVFIL 309 PF+V+LS++A V LVAF+ +E TVEKPL+ LRLL +R NF +G+A+ Sbjct: 243 PFIVKLSILAFVFLVAFIWIELTVEKPLVKLRLLKQR--------NFGIGVAVN------ 288 Query: 310 PQYLSRIQGYNAEQIGMVLAWTGLPQLVLIPLVPRLMQRFDPRIIISVGFALFGSVYLLP 369 + VG ALFG+VY+LP Sbjct: 289 ---------------------------------------------VLVGVALFGTVYILP 303 Query: 370 AYLGQVQRYNAEQIGQVLAWTGLPQLILIPLVPKLMQRFDPRFIAFTGMILFAVSSFMNI 429 YLGQVQRYNAEQIG VLAWTGLPQL+LIPLVP +M+RFD R+I F G+ +FA+S FMNI Sbjct: 304 QYLGQVQRYNAEQIGNVLAWTGLPQLLLIPLVPMMMKRFDARYIGFLGISIFAISCFMNI 363 Query: 430 AMSLDYSGDQFFVPNIVRAIGQAIMLAPLSAVSLGSVAPQDAAAASGISN 479 +S D +GDQF++PNI+RAIGQA++L P++A++ +AP DAAAASG++N Sbjct: 364 TLSADTAGDQFWIPNIIRAIGQALVLTPITAITTAGIAPSDAAAASGLTN 413 >ref|YP_002284240.1| drug resistance transporter, EmrB/QacA subfamily [Rhizobium leguminosarum bv. trifolii WSM2304] gb|ACI59369.1| drug resistance transporter, EmrB/QacA subfamily [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 527 Score = 548 bits (1413), Expect = e-154, Method: Compositional matrix adjust. Identities = 300/535 (56%), Positives = 364/535 (68%), Gaps = 86/535 (16%) Query: 15 AAAVAADPN-RASMAVWISIVAAMIGAFMAILNIQITNASLLNIEGGIGTGVDNGSWIST 73 AA A P RAS WI+++A MIGAFMAILNIQITNASLL+IEGGIGTGVDNG+WIST Sbjct: 5 AATAGAIPQPRASTREWIAVLAGMIGAFMAILNIQITNASLLDIEGGIGTGVDNGAWIST 64 Query: 74 SYLIGEIVVIPLTDYLSRVFSFRKIIIGFATLFAIFSVACAFTHDLPSMIAMRGLQGFFG 133 SYLIGEIVVIPLT Y S VFSFR+ I+ + LF +FS+ACAF HDL +MI +RGLQGF G Sbjct: 65 SYLIGEIVVIPLTAYFSSVFSFRRYILVNSILFPLFSIACAFAHDLGTMIVLRGLQGFAG 124 Query: 134 GVLIPMAFTLVFTKLPKAQQPVGLAMFALAVTFAPAIGPTIGGYLTENYGWQTIFFVNVI 193 GVLIPMAFT+V TKLPK QQP+GLA+FAL+VTFAPAIGPTIGGYLTENYGWQTIFF+N I Sbjct: 125 GVLIPMAFTMVLTKLPKPQQPLGLAIFALSVTFAPAIGPTIGGYLTENYGWQTIFFINAI 184 Query: 194 PTAVMVITLYFTLERQPMQLHLLREGDWLGIVTMAIGLSSLQAVLEEGNKNDWFGSPFVV 253 P+A+M + L TL++QPMQLHLLR+GDW GI TMAIGLS+LQ VLEEGNK DWF SPF+V Sbjct: 185 PSAIMAVALALTLDKQPMQLHLLRQGDWAGIFTMAIGLSALQTVLEEGNKEDWFSSPFIV 244 Query: 254 RLSVIAAVALVAFLIVEFTVEKPLLNLRLLARRNFGFGMLANFLLGIALYGSVFILPQYL 313 +LS++A V L AF+ +E TV+KPL+ L LL +R NF +G+A+ Sbjct: 245 KLSILAFVFLAAFIWIELTVKKPLVKLSLLTQR--------NFGIGVAVN---------- 286 Query: 314 SRIQGYNAEQIGMVLAWTGLPQLVLIPLVPRLMQRFDPRIIISVGFALFGSVYLLPAYLG 373 + VG ALFG+VY+LP YLG Sbjct: 287 -----------------------------------------VLVGVALFGTVYILPQYLG 305 Query: 374 QVQRYNAEQIGQVLAWTGLPQLILIPLVPKLMQRFDPRFIAFTGMILFAVSSFMNIAMSL 433 QVQRYNAEQIG VLAWTGLPQL+LIPLVP +M+RFD R+I F G+ +FA+S FMN+ +S Sbjct: 306 QVQRYNAEQIGMVLAWTGLPQLLLIPLVPMMMKRFDARYIGFLGISIFAISCFMNVTLSA 365 Query: 434 DYSGDQFFVPNIVRAIGQAIMLAPLSAVSLGSVAPQDAAAASGISNXRLRAV-------- 485 D +GDQF++PNIVRAIGQA++L P++A++ +A DAAAASG++N LR + Sbjct: 366 DTAGDQFWIPNIVRAIGQALVLTPITAITTAGIAATDAAAASGLTNM-LRNLGGAVGTAT 424 Query: 486 ------RRLQLHEHLHDQ-----------RLCHRPAVLAQHRPCDRPGAGDGAAV 523 +R Q H ++ Q RL A QH D AG A V Sbjct: 425 LGTVLTKREQFHSNIIGQSVTLGRDEVRDRLAQTTAYFMQHGISDPALAGQKAVV 479 >ref|YP_001984971.1| multidrug efflux transporter protein [Rhizobium etli CIAT 652] gb|ACE94421.1| multidrug efflux transporter protein [Rhizobium etli CIAT 652] gb|EGE59223.1| multidrug efflux transporter protein [Rhizobium etli CNPAF512] Length = 527 Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust. Identities = 298/529 (56%), Positives = 362/529 (68%), Gaps = 87/529 (16%) Query: 10 SAAPRAAAVAADPNRASMAVWISIVAAMIGAFMAILNIQITNASLLNIEGGIGTGVDNGS 69 S A A A+A RAS WI+++A MIGAFMAILNIQITNASLL+IEGGIGTGVDNG+ Sbjct: 3 SIAATAGAIAQP--RASTRDWIAVLAGMIGAFMAILNIQITNASLLDIEGGIGTGVDNGA 60 Query: 70 WISTSYLIGEIVVIPLTDYLSRVFSFRKIIIGFATLFAIFSVACAFTHDLPSMIAMRGLQ 129 WISTSYLIGEIVVIPLT Y S VFSFR+ I+ + LF +FS+ACAF HDL +MI +RGLQ Sbjct: 61 WISTSYLIGEIVVIPLTAYFSSVFSFRRYILVNSILFPLFSIACAFAHDLGTMILLRGLQ 120 Query: 130 GFFGGVLIPMAFTLVFTKLPKAQQPVGLAMFALAVTFAPAIGPTIGGYLTENYGWQTIFF 189 GF GGVLIPMAFT+V TKLPK+QQP+GLA+FAL+VTFAPAIGPTIGGYLTENYGWQTIFF Sbjct: 121 GFAGGVLIPMAFTMVLTKLPKSQQPLGLAIFALSVTFAPAIGPTIGGYLTENYGWQTIFF 180 Query: 190 VNVIPTAVMVITLYFTLERQPMQLHLLREGDWLGIVTMAIGLSSLQAVLEEGNKNDWFGS 249 +N IP+AVM L TLE+QPMQL LL+EGDW GIVTMAIGLS+LQ VLEEGNK DWF S Sbjct: 181 INAIPSAVMAAALALTLEKQPMQLGLLKEGDWAGIVTMAIGLSALQTVLEEGNKEDWFAS 240 Query: 250 PFVVRLSVIAAVALVAFLIVEFTVEKPLLNLRLLARRNFGFGMLANFLLGIALYGSVFIL 309 F+V+LS++A V L AF+ +E TV+KPL+ L LL +R NF +G+A+ Sbjct: 241 SFIVKLSILAFVFLAAFIWIELTVKKPLVKLSLLTQR--------NFGIGVAVN------ 286 Query: 310 PQYLSRIQGYNAEQIGMVLAWTGLPQLVLIPLVPRLMQRFDPRIIISVGFALFGSVYLLP 369 + VG ALFG+VY+LP Sbjct: 287 ---------------------------------------------VLVGVALFGTVYILP 301 Query: 370 AYLGQVQRYNAEQIGQVLAWTGLPQLILIPLVPKLMQRFDPRFIAFTGMILFAVSSFMNI 429 YLGQVQRYNAEQIG VLAWTGLPQL+LIPLVP +M+RFD R+I F G+ +FA+S F+NI Sbjct: 302 QYLGQVQRYNAEQIGNVLAWTGLPQLLLIPLVPMMMKRFDARYIGFLGISIFAISCFLNI 361 Query: 430 AMSLDYSGDQFFVPNIVRAIGQAIMLAPLSAVSLGSVAPQDAAAASGISNXRLRAV---- 485 +S D +GDQF++PNIVRA+GQA++L P++A++ +AP DAAAASG++N LR + Sbjct: 362 TLSADTAGDQFWIPNIVRAVGQALVLTPITAITTAGIAPADAAAASGLTNM-LRNLGGAV 420 Query: 486 ----------RRLQLHEHLHDQ-----------RLCHRPAVLAQHRPCD 513 +R Q H ++ Q RL A QH D Sbjct: 421 GTATLGTVLTKREQFHSNIIGQSVTLGRDEVRDRLAQTTAYFMQHGVSD 469 >ref|NP_774599.1| transport protein [Bradyrhizobium japonicum USDA 110] dbj|BAC53224.1| blr7959 [Bradyrhizobium japonicum USDA 110] Length = 503 Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust. Identities = 261/330 (79%), Positives = 293/330 (88%) Query: 33 IVAAMIGAFMAILNIQITNASLLNIEGGIGTGVDNGSWISTSYLIGEIVVIPLTDYLSRV 92 ++AAMIG+FMAILNIQITNASLLNIEGGIGTG DNGSWISTSYLIGEI+VIPLTDYLSRV Sbjct: 1 MLAAMIGSFMAILNIQITNASLLNIEGGIGTGADNGSWISTSYLIGEIIVIPLTDYLSRV 60 Query: 93 FSFRKIIIGFATLFAIFSVACAFTHDLPSMIAMRGLQGFFGGVLIPMAFTLVFTKLPKAQ 152 FSFR+ ++ A+LFA FSVACAFTHDLPSMIAMRGLQGF GGVLIPMAFTLV TKLPK Q Sbjct: 61 FSFRRYMLASASLFAAFSVACAFTHDLPSMIAMRGLQGFAGGVLIPMAFTLVLTKLPKPQ 120 Query: 153 QPVGLAMFALAVTFAPAIGPTIGGYLTENYGWQTIFFVNVIPTAVMVITLYFTLERQPMQ 212 QPVGLA+FAL+VTFAPAIGPTIGGYLTE YGW+TIFFVNVIPTAVMV LY TLE+Q MQ Sbjct: 121 QPVGLAIFALSVTFAPAIGPTIGGYLTETYGWRTIFFVNVIPTAVMVAALYLTLEKQKMQ 180 Query: 213 LHLLREGDWLGIVTMAIGLSSLQAVLEEGNKNDWFGSPFVVRLSVIAAVALVAFLIVEFT 272 L LL+EGDW GI TMAIGLS+LQAVLEEGNK+DWF SPF+V+L+VIAAV+L F+ +E T Sbjct: 181 LGLLKEGDWAGIFTMAIGLSALQAVLEEGNKDDWFSSPFIVKLAVIAAVSLTLFVTIELT 240 Query: 273 VEKPLLNLRLLARRNFGFGMLANFLLGIALYGSVFILPQYLSRIQGYNAEQIGMVLAWTG 332 +EKPL+ LRLLA+RNFGFG LA ++G AL+GSV+ILP YL + QGYNAEQIG VLAWTG Sbjct: 241 IEKPLIRLRLLAQRNFGFGTLAMTMVGFALFGSVYILPAYLGQAQGYNAEQIGNVLAWTG 300 Query: 333 LPQLVLIPLVPRLMQRFDPRIIISVGFALF 362 LPQLVLIPL+P+LMQRFD R I G +F Sbjct: 301 LPQLVLIPLIPKLMQRFDTRYIAITGLLIF 330 Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 93/123 (75%), Positives = 109/123 (88%) Query: 357 VGFALFGSVYLLPAYLGQVQRYNAEQIGQVLAWTGLPQLILIPLVPKLMQRFDPRFIAFT 416 VGFALFGSVY+LPAYLGQ Q YNAEQIG VLAWTGLPQL+LIPL+PKLMQRFD R+IA T Sbjct: 266 VGFALFGSVYILPAYLGQAQGYNAEQIGNVLAWTGLPQLVLIPLIPKLMQRFDTRYIAIT 325 Query: 417 GMILFAVSSFMNIAMSLDYSGDQFFVPNIVRAIGQAIMLAPLSAVSLGSVAPQDAAAASG 476 G+++FA S FMN AMS DY+GDQ ++PNIVRA+GQA++L PL++V G +APQDAAAASG Sbjct: 326 GLLIFAYSCFMNTAMSPDYAGDQLWIPNIVRAVGQAMVLTPLTSVLTGGIAPQDAAAASG 385 Query: 477 ISN 479 ISN Sbjct: 386 ISN 388