BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0008.p         (232 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001208011.1| glutamate/aspartate ABC transporter permease...   413   e-114
ref|NP_774238.1| amino acid ABC transporter permease protein [Br...   411   e-113
ref|YP_665989.1| polar amino acid ABC transporter, inner membran...   347   6e-94
ref|YP_001771320.1| polar amino acid ABC transporter inner membr...   347   7e-94
ref|YP_002499650.1| polar amino acid ABC transporter inner membr...   334   6e-90

>ref|YP_001208011.1| glutamate/aspartate ABC transporter permease [Bradyrhizobium sp.
           ORS 278]
 emb|CAL79796.1| glutamate/aspartate ABC transporter (permease protein)
           [Bradyrhizobium sp. ORS 278]
          Length = 230

 Score =  413 bits (1062), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/230 (89%), Positives = 221/230 (96%)

Query: 3   MIGSFDFDVIRRSLPYLFLEGMRFTLTLTALAAFGGLVFGTLIALMRLSSYKVLGRIAGF 62
           M+ +FDFDVIRRSL YLF++GM FTLTLTAL+AFGGLVFGTLIA+MRLS Y+V+G IAG 
Sbjct: 1   MLANFDFDVIRRSLSYLFIDGMTFTLTLTALSAFGGLVFGTLIAMMRLSGYRVMGWIAGL 60

Query: 63  YVDFIRSLPLVLVIFWFYFLVPYIGQWLTGASRPITVGAFASSLITFIAFEAAYFSEIMR 122
           YVDF+RSLPLVLVIFWFYFLVPYIGQW+TG+SRPI VGAFASSLITFI FEAAYFSEIMR
Sbjct: 61  YVDFMRSLPLVLVIFWFYFLVPYIGQWITGSSRPIKVGAFASSLITFIMFEAAYFSEIMR 120

Query: 123 AGIQSISKGQPAAASALGLTYAQSMRYVVLPQAFRNMLPVLLTQTIVLFQDTSLVYVLSI 182
           AGIQSIS+GQPAAASALGLTYAQ+MRYVVLPQAFRNMLPVLLTQTIVLFQDTSLVYVLSI
Sbjct: 121 AGIQSISRGQPAAASALGLTYAQTMRYVVLPQAFRNMLPVLLTQTIVLFQDTSLVYVLSI 180

Query: 183 PDFLGAASKVAQRDGRLVEMYLFAALVYFVISCVASYGVRRLQARIAIVR 232
           PDFLGAASKVAQRDGRLVEMYLFAALVYF ISC+ASYGVRRLQ+RIAI+R
Sbjct: 181 PDFLGAASKVAQRDGRLVEMYLFAALVYFTISCIASYGVRRLQSRIAIIR 230


>ref|NP_774238.1| amino acid ABC transporter permease protein [Bradyrhizobium
           japonicum USDA 110]
 dbj|BAC52863.1| amino acid ABC transporter permease protein [Bradyrhizobium
           japonicum USDA 110]
          Length = 230

 Score =  411 bits (1056), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/230 (89%), Positives = 219/230 (95%)

Query: 3   MIGSFDFDVIRRSLPYLFLEGMRFTLTLTALAAFGGLVFGTLIALMRLSSYKVLGRIAGF 62
           M G+ DFDVIRR+LPYLF EGM FT+TLTALA  GGL+FGT IALMRLS +KVLGRIAG 
Sbjct: 1   MFGNLDFDVIRRALPYLFYEGMTFTVTLTALAGLGGLIFGTAIALMRLSGFKVLGRIAGV 60

Query: 63  YVDFIRSLPLVLVIFWFYFLVPYIGQWLTGASRPITVGAFASSLITFIAFEAAYFSEIMR 122
           YVDF+RSLPLVLVIFWFYFLVPYIGQW+TGASRPI+VGAFASSLITFI FEAAYFSEIMR
Sbjct: 61  YVDFMRSLPLVLVIFWFYFLVPYIGQWVTGASRPISVGAFASSLITFIMFEAAYFSEIMR 120

Query: 123 AGIQSISKGQPAAASALGLTYAQSMRYVVLPQAFRNMLPVLLTQTIVLFQDTSLVYVLSI 182
           AGIQSIS+GQPAAA+ALGLTYAQ+MRYVVLPQAFRNMLPVLLTQTIVLFQDTSLVYVLSI
Sbjct: 121 AGIQSISRGQPAAANALGLTYAQTMRYVVLPQAFRNMLPVLLTQTIVLFQDTSLVYVLSI 180

Query: 183 PDFLGAASKVAQRDGRLVEMYLFAALVYFVISCVASYGVRRLQARIAIVR 232
           PDFLGAASKVAQRDGRLVEMYLFAA+VYF ISCVAS+GVRRLQARIAI+R
Sbjct: 181 PDFLGAASKVAQRDGRLVEMYLFAAVVYFTISCVASFGVRRLQARIAIIR 230


>ref|YP_665989.1| polar amino acid ABC transporter, inner membrane subunit
           [Mesorhizobium sp. BNC1]
 gb|ABG61342.1| L-aspartate ABC transporter membrane protein / L-glutamate ABC
           transporter membrane protein [Chelativorans sp. BNC1]
          Length = 230

 Score =  347 bits (891), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 176/230 (76%), Positives = 198/230 (86%)

Query: 3   MIGSFDFDVIRRSLPYLFLEGMRFTLTLTALAAFGGLVFGTLIALMRLSSYKVLGRIAGF 62
           M  SFDFDVI RSLPYLF +GMRFTL LTALA  GG+V GTL+ALMRLSS K L  +AG 
Sbjct: 1   MFYSFDFDVIARSLPYLFWDGMRFTLLLTALATIGGIVLGTLLALMRLSSIKALSTLAGG 60

Query: 63  YVDFIRSLPLVLVIFWFYFLVPYIGQWLTGASRPITVGAFASSLITFIAFEAAYFSEIMR 122
           YV+ +RSLPLVLVIFWFYFLVPYIG WL GAS+PI VGAFAS+LITF  FEAAYFSEIMR
Sbjct: 61  YVNLMRSLPLVLVIFWFYFLVPYIGAWLIGASQPIAVGAFASALITFTLFEAAYFSEIMR 120

Query: 123 AGIQSISKGQPAAASALGLTYAQSMRYVVLPQAFRNMLPVLLTQTIVLFQDTSLVYVLSI 182
           AGIQSI +GQ  A  A+GL Y+Q M Y+VLPQAFRNMLPV+LTQTI+LFQDTSLVYV+S+
Sbjct: 121 AGIQSIPRGQTGAGYAIGLNYSQVMGYIVLPQAFRNMLPVMLTQTIILFQDTSLVYVISL 180

Query: 183 PDFLGAASKVAQRDGRLVEMYLFAALVYFVISCVASYGVRRLQARIAIVR 232
            DFLGAASKVAQRDGRLVEMYLFAA++YFVIS  AS+ V+RL+AR AI+R
Sbjct: 181 TDFLGAASKVAQRDGRLVEMYLFAAIIYFVISFAASFLVKRLEARTAIIR 230


>ref|YP_001771320.1| polar amino acid ABC transporter inner membrane subunit
           [Methylobacterium sp. 4-46]
 gb|ACA18886.1| polar amino acid ABC transporter, inner membrane subunit
           [Methylobacterium sp. 4-46]
          Length = 230

 Score =  347 bits (891), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 182/230 (79%), Positives = 195/230 (84%)

Query: 3   MIGSFDFDVIRRSLPYLFLEGMRFTLTLTALAAFGGLVFGTLIALMRLSSYKVLGRIAGF 62
           M+ +FDF VI  +LPYLFL GM FTLTLTALAA  G + GTLIA+MRLS   VL  +A  
Sbjct: 1   MLSNFDFSVIVSALPYLFLTGMTFTLTLTALAAVSGTILGTLIAMMRLSGLPVLPLVAKG 60

Query: 63  YVDFIRSLPLVLVIFWFYFLVPYIGQWLTGASRPITVGAFASSLITFIAFEAAYFSEIMR 122
           YV+F+RSLPLVLVIFWFYFLVPY+GQWL GA RPI VGAF SSL+TF  FEAAYFSEIMR
Sbjct: 61  YVNFMRSLPLVLVIFWFYFLVPYLGQWLIGAERPIQVGAFTSSLVTFTLFEAAYFSEIMR 120

Query: 123 AGIQSISKGQPAAASALGLTYAQSMRYVVLPQAFRNMLPVLLTQTIVLFQDTSLVYVLSI 182
           AGIQSI KGQ AAASALGLTY QSM  V+LPQAFRNMLPVLLTQTIVLFQDTSLVYVLSI
Sbjct: 121 AGIQSIPKGQAAAASALGLTYWQSMGSVILPQAFRNMLPVLLTQTIVLFQDTSLVYVLSI 180

Query: 183 PDFLGAASKVAQRDGRLVEMYLFAALVYFVISCVASYGVRRLQARIAIVR 232
            DFLGAASKVAQRDGRLVEMYLFAALVYF I  +AS  VRRLQ RIAI+R
Sbjct: 181 TDFLGAASKVAQRDGRLVEMYLFAALVYFAICFLASILVRRLQRRIAIIR 230


>ref|YP_002499650.1| polar amino acid ABC transporter inner membrane subunit
           [Methylobacterium nodulans ORS 2060]
 gb|ACL59347.1| polar amino acid ABC transporter, inner membrane subunit
           [Methylobacterium nodulans ORS 2060]
          Length = 230

 Score =  334 bits (856), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 183/230 (79%), Positives = 197/230 (85%)

Query: 3   MIGSFDFDVIRRSLPYLFLEGMRFTLTLTALAAFGGLVFGTLIALMRLSSYKVLGRIAGF 62
           M+ +FDF VI  +LPYLFL GM FTLTLTALAA GG++ GTLIA+MRLS   V   +A  
Sbjct: 1   MLANFDFSVIVNALPYLFLTGMTFTLTLTALAALGGVILGTLIAMMRLSGLPVAPVVAKG 60

Query: 63  YVDFIRSLPLVLVIFWFYFLVPYIGQWLTGASRPITVGAFASSLITFIAFEAAYFSEIMR 122
           YV+F+RSLPLVLVIFWFYFLVPYIGQWLTGA RPI VGAF SSL+TF  FEAAYFSEIMR
Sbjct: 61  YVNFMRSLPLVLVIFWFYFLVPYIGQWLTGADRPIQVGAFTSSLVTFTLFEAAYFSEIMR 120

Query: 123 AGIQSISKGQPAAASALGLTYAQSMRYVVLPQAFRNMLPVLLTQTIVLFQDTSLVYVLSI 182
           AGIQSI KGQ AAASALGLTY QSM  ++LPQAFRNMLPVLLTQTIVLFQDTSLVYVLSI
Sbjct: 121 AGIQSIPKGQSAAASALGLTYWQSMSNIILPQAFRNMLPVLLTQTIVLFQDTSLVYVLSI 180

Query: 183 PDFLGAASKVAQRDGRLVEMYLFAALVYFVISCVASYGVRRLQARIAIVR 232
            DFLGAASKVAQRDGRLVEMYLFAA+VYFVI   AS  VRRLQ RIAI+R
Sbjct: 181 TDFLGAASKVAQRDGRLVEMYLFAAVVYFVICFFASTLVRRLQRRIAIIR 230