BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0007.p (243 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774239.1| amino acid ABC transporter permease protein [Br... 435 e-120 ref|YP_001208012.1| glutamate/aspartate ABC transporter permease... 402 e-110 ref|YP_001771319.1| polar amino acid ABC transporter inner membr... 340 1e-91 ref|YP_002499649.1| polar amino acid ABC transporter inner membr... 339 2e-91 ref|YP_001754934.1| polar amino acid ABC transporter inner membr... 329 2e-88 >ref|NP_774239.1| amino acid ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC52864.1| amino acid ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 243 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 214/243 (88%), Positives = 231/243 (95%) Query: 1 VNYNWNWHIFLEPNPMGTGTYLDLLLAGLVVTIKVSVLAWIIALVSGSVIGVLRTLPSRT 60 +NY+WNW IF EPNPMGTGTYLD+LL+GLV+T+K +VLAWIIALV GS++GV+RTLPS+ Sbjct: 1 MNYHWNWGIFFEPNPMGTGTYLDMLLSGLVLTLKTAVLAWIIALVFGSLVGVMRTLPSKA 60 Query: 61 ASWIGFCWVEFFRNMPLLVQLFLWFFVLPELLPRSAGLWLKQLPNAPFWTAAIGVGFFMS 120 A GFCWVEFFRNMPLLVQLFLWFFVLPELLP+SAGLWLKQLPNAPFWTAAIG+GFFMS Sbjct: 61 AYRFGFCWVEFFRNMPLLVQLFLWFFVLPELLPKSAGLWLKQLPNAPFWTAAIGIGFFMS 120 Query: 121 ARVAVQLQAGITSLPRGQKQASTALGLTTVQTYRYVLLPMAFRIILPPLTSEFLNTIKNS 180 ARVAVQLQAGI SLPRGQK A+TALGLTTVQ YRYVLLPMAFRIILPPLTSEFLNTIKN+ Sbjct: 121 ARVAVQLQAGIGSLPRGQKMAATALGLTTVQGYRYVLLPMAFRIILPPLTSEFLNTIKNT 180 Query: 181 AVAITIGLIELTGQARSMQEFSFQVFEAFTAATVLYLLLNFVVVTAMRFLERYVAIPGYI 240 AVAITIGLIELTGQARSMQEFSFQVFEAFTAAT+LYLL+N VVVTAMRFLERYVAIPGYI Sbjct: 181 AVAITIGLIELTGQARSMQEFSFQVFEAFTAATILYLLVNAVVVTAMRFLERYVAIPGYI 240 Query: 241 TGK 243 TGK Sbjct: 241 TGK 243 >ref|YP_001208012.1| glutamate/aspartate ABC transporter permease [Bradyrhizobium sp. ORS 278] emb|CAL79797.1| glutamate/aspartate ABC transporter (permease protein) [Bradyrhizobium sp. ORS 278] Length = 243 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 193/243 (79%), Positives = 220/243 (90%) Query: 1 VNYNWNWHIFLEPNPMGTGTYLDLLLAGLVVTIKVSVLAWIIALVSGSVIGVLRTLPSRT 60 +NY WNWHIFLEPNP G GTY D+LLAGL VTI S+ AW+IAL+ G+++G+LR+LPS+ Sbjct: 1 MNYTWNWHIFLEPNPTGAGTYFDMLLAGLKVTIVTSLSAWLIALIFGTIVGILRSLPSKL 60 Query: 61 ASWIGFCWVEFFRNMPLLVQLFLWFFVLPELLPRSAGLWLKQLPNAPFWTAAIGVGFFMS 120 A WIGF +VEFFRNMPLLVQLFLWFFVLPELLPR+AGLWLKQ+PNAPF+TAA+G+G FMS Sbjct: 61 AGWIGFLYVEFFRNMPLLVQLFLWFFVLPELLPRAAGLWLKQMPNAPFFTAAVGIGLFMS 120 Query: 121 ARVAVQLQAGITSLPRGQKQASTALGLTTVQTYRYVLLPMAFRIILPPLTSEFLNTIKNS 180 ARVAVQL AGI SLPRGQK A+TALGLTT+Q YRYVLLPMAFRIILPPLTSEFLNT+KNS Sbjct: 121 ARVAVQLAAGIGSLPRGQKMAATALGLTTLQVYRYVLLPMAFRIILPPLTSEFLNTVKNS 180 Query: 181 AVAITIGLIELTGQARSMQEFSFQVFEAFTAATVLYLLLNFVVVTAMRFLERYVAIPGYI 240 AVAITIGLIELTG AR+MQEFSFQVFEAF+AAT++YL++N +VV MR LER VAIPGYI Sbjct: 181 AVAITIGLIELTGAARAMQEFSFQVFEAFSAATLMYLVINIIVVIGMRLLERAVAIPGYI 240 Query: 241 TGK 243 TGK Sbjct: 241 TGK 243 >ref|YP_001771319.1| polar amino acid ABC transporter inner membrane subunit [Methylobacterium sp. 4-46] gb|ACA18885.1| polar amino acid ABC transporter, inner membrane subunit [Methylobacterium sp. 4-46] Length = 240 Score = 340 bits (871), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 165/238 (69%), Positives = 203/238 (85%) Query: 1 VNYNWNWHIFLEPNPMGTGTYLDLLLAGLVVTIKVSVLAWIIALVSGSVIGVLRTLPSRT 60 +NYNWNW IF EP+P GTGTY D+LL+GL+ TI ++ AW+IA GSVIGV+RTLP+R Sbjct: 1 MNYNWNWSIFFEPSPEGTGTYADMLLSGLLWTIVTALCAWVIAFAVGSVIGVMRTLPNRF 60 Query: 61 ASWIGFCWVEFFRNMPLLVQLFLWFFVLPELLPRSAGLWLKQLPNAPFWTAAIGVGFFMS 120 A G +VE FRN+PLLVQ+FLWFFVLPE+LP+S G WLKQLP+APF+TA + +GFF + Sbjct: 61 AQAFGNGYVELFRNIPLLVQMFLWFFVLPEMLPQSWGTWLKQLPDAPFYTAVVCLGFFTA 120 Query: 121 ARVAVQLQAGITSLPRGQKQASTALGLTTVQTYRYVLLPMAFRIILPPLTSEFLNTIKNS 180 +RVA Q++AGI +LPRGQ+ A TALGLTT QTYRYVLLP A+RIILPPLTSEFLN +KN+ Sbjct: 121 SRVAEQVRAGIQALPRGQRMAGTALGLTTSQTYRYVLLPNAYRIILPPLTSEFLNNLKNT 180 Query: 181 AVAITIGLIELTGQARSMQEFSFQVFEAFTAATVLYLLLNFVVVTAMRFLERYVAIPG 238 +VA+TIGL+ELT +ARSMQEFSFQVFEAFTAAT+LY+++N +VVTA +LER VAIPG Sbjct: 181 SVALTIGLLELTARARSMQEFSFQVFEAFTAATILYIIINLLVVTAAGYLERKVAIPG 238 >ref|YP_002499649.1| polar amino acid ABC transporter inner membrane subunit [Methylobacterium nodulans ORS 2060] gb|ACL59346.1| polar amino acid ABC transporter, inner membrane subunit [Methylobacterium nodulans ORS 2060] Length = 240 Score = 339 bits (870), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 168/238 (70%), Positives = 201/238 (84%) Query: 1 VNYNWNWHIFLEPNPMGTGTYLDLLLAGLVVTIKVSVLAWIIALVSGSVIGVLRTLPSRT 60 +NYNWNW IF + +P GTGTY D+LL+GLV TI ++ AWIIA GSVIGV+RTLP+R Sbjct: 1 MNYNWNWSIFFDLSPEGTGTYADMLLSGLVWTIVTALCAWIIAFAVGSVIGVMRTLPNRA 60 Query: 61 ASWIGFCWVEFFRNMPLLVQLFLWFFVLPELLPRSAGLWLKQLPNAPFWTAAIGVGFFMS 120 A G +VE FRN+PLLVQ+FLWFFVLPELLP+ G WLKQLP+APF+TA + +GFF + Sbjct: 61 AQAFGNGYVEVFRNIPLLVQMFLWFFVLPELLPQDWGTWLKQLPDAPFYTAVVCLGFFTA 120 Query: 121 ARVAVQLQAGITSLPRGQKQASTALGLTTVQTYRYVLLPMAFRIILPPLTSEFLNTIKNS 180 +RVA Q++AGI SLPRGQ+ A TALGLTT QTYRYVLLP A+RIILPPLTSEFLN +KN+ Sbjct: 121 SRVAEQVRAGIQSLPRGQRMAGTALGLTTGQTYRYVLLPNAYRIILPPLTSEFLNNLKNT 180 Query: 181 AVAITIGLIELTGQARSMQEFSFQVFEAFTAATVLYLLLNFVVVTAMRFLERYVAIPG 238 +VA+TIGL+ELT +ARSMQEFSFQVFEAFTAAT+LY+++N VVVTA FLER VAIPG Sbjct: 181 SVALTIGLLELTARARSMQEFSFQVFEAFTAATILYIIINLVVVTAAGFLERKVAIPG 238 >ref|YP_001754934.1| polar amino acid ABC transporter inner membrane protein [Methylobacterium radiotolerans JCM 2831] gb|ACB24251.1| polar amino acid ABC transporter, inner membrane subunit [Methylobacterium radiotolerans JCM 2831] Length = 240 Score = 329 bits (843), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 157/238 (65%), Positives = 200/238 (84%) Query: 1 VNYNWNWHIFLEPNPMGTGTYLDLLLAGLVVTIKVSVLAWIIALVSGSVIGVLRTLPSRT 60 +NYNWNW IF + +P G GTYLD+LL+GL+ TI ++ +W+IA GS+IGVLRTLPS+ Sbjct: 1 MNYNWNWRIFFDASPEGNGTYLDMLLSGLMWTITTALCSWVIAFFLGSLIGVLRTLPSKP 60 Query: 61 ASWIGFCWVEFFRNMPLLVQLFLWFFVLPELLPRSAGLWLKQLPNAPFWTAAIGVGFFMS 120 A+ IG +VE FRN+PLLVQ+FLW+FVLPE++P G +KQLP+APF+TA + +GFF + Sbjct: 61 ANAIGTAYVELFRNVPLLVQMFLWYFVLPEVVPTRIGDAIKQLPDAPFYTAVVCLGFFTA 120 Query: 121 ARVAVQLQAGITSLPRGQKQASTALGLTTVQTYRYVLLPMAFRIILPPLTSEFLNTIKNS 180 +RVA Q++AGI SLPRGQ+ A TA+G TT QTYRYVLLP A+RIILPP+TSEFLN +KN+ Sbjct: 121 SRVAEQVRAGIQSLPRGQRMAGTAMGFTTYQTYRYVLLPNAYRIILPPMTSEFLNNLKNT 180 Query: 181 AVAITIGLIELTGQARSMQEFSFQVFEAFTAATVLYLLLNFVVVTAMRFLERYVAIPG 238 +VA+TIGL+ELT +ARSMQEFSFQVFEAFTAAT+LY+++N VVVTA FLE+ VAIPG Sbjct: 181 SVALTIGLLELTARARSMQEFSFQVFEAFTAATILYVIINLVVVTAATFLEKAVAIPG 238