BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0003.p (321 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767594.1| hypothetical protein bll0954 [Bradyrhizobium ja... 577 e-163 ref|ZP_08629096.1| tricarboxylate transport protein [Bradyrhizob... 563 e-158 ref|ZP_08629099.1| tricarboxylate transport protein [Bradyrhizob... 502 e-140 ref|YP_004157594.1| hypothetical protein Varpa_5327 [Variovorax ... 341 1e-91 ref|YP_002946562.1| hypothetical protein Vapar_4691 [Variovorax ... 330 1e-88 >ref|NP_767594.1| hypothetical protein bll0954 [Bradyrhizobium japonicum USDA 110] dbj|BAC46219.1| bll0954 [Bradyrhizobium japonicum USDA 110] Length = 325 Score = 577 bits (1487), Expect = e-163, Method: Compositional matrix adjust. Identities = 276/297 (92%), Positives = 292/297 (98%) Query: 25 QDYPTKPITLIVPWPAGGSTDISMRAIAESASKVLGQPIAVDNKAGGGGTVGPATMAAGA 84 QDYP+KP+TLIVPWPAGGSTDISMRAIA+SASKVLGQPI +DNKAGGGGTVGPATMAA A Sbjct: 29 QDYPSKPVTLIVPWPAGGSTDISMRAIADSASKVLGQPIVIDNKAGGGGTVGPATMAAAA 88 Query: 85 KPDGYTIAQIPITVFRLPLMQEVSWDPAKDFSYIIHLTGYTFGVTTNAESQFKTWQDVVD 144 KPDGYTI+QIPITVFRLPLMQ+VSWDPAKDF+YIIHLTGYTFGVTT+AESQFK+W+DVV+ Sbjct: 89 KPDGYTISQIPITVFRLPLMQDVSWDPAKDFTYIIHLTGYTFGVTTSAESQFKSWKDVVE 148 Query: 145 FAKKNPGKVTYATPGTGTSLHVGMEQIALMAGIKLTQVPFKGGAETNAAVLGQHTMLQAD 204 FAK NPGKVTYATPGTGTSLH+GMEQIA M+GIKLTQVPFKGGAETNAAVLGQHTMLQAD Sbjct: 149 FAKANPGKVTYATPGTGTSLHIGMEQIAAMSGIKLTQVPFKGGAETNAAVLGQHTMLQAD 208 Query: 205 STGWRPLVDAGKLRLLMVWTGARSPNYPDVPTLKELGYPMVYDSPFGIAGPKGMDPKIVA 264 STGWRPLVDAGKL+LLMVWTGARSPNYPDVPTLKELGYPMVYDSPFGIAGPKGMDPKIVA Sbjct: 209 STGWRPLVDAGKLKLLMVWTGARSPNYPDVPTLKELGYPMVYDSPFGIAGPKGMDPKIVA 268 Query: 265 KLHDAFKKAIEDPAVIATLAKYDMVPNYKSTEDYRKFVGEVTESERKVIDTLGLAKK 321 KLHDAFKKA+EDPAVIATLAKYDMVPNYK+TEDYRKFV EVTESERKVIDTLGLAKK Sbjct: 269 KLHDAFKKAVEDPAVIATLAKYDMVPNYKNTEDYRKFVVEVTESERKVIDTLGLAKK 325 >ref|ZP_08629096.1| tricarboxylate transport protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08455.1| tricarboxylate transport protein [Bradyrhizobiaceae bacterium SG-6C] Length = 314 Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust. Identities = 274/312 (87%), Positives = 290/312 (92%) Query: 10 LLAAAGMLVSTAALAQDYPTKPITLIVPWPAGGSTDISMRAIAESASKVLGQPIAVDNKA 69 + AA +S ALAQDYPTKPITLIVPWPAGGSTDISMRAIAESASKVLGQP+ VDNKA Sbjct: 1 MAVAALAALSGVALAQDYPTKPITLIVPWPAGGSTDISMRAIAESASKVLGQPVVVDNKA 60 Query: 70 GGGGTVGPATMAAGAKPDGYTIAQIPITVFRLPLMQEVSWDPAKDFSYIIHLTGYTFGVT 129 GGGGTVGPATMAA AKPDGYTI+QIPITVFRLPLMQ+VSW+ KDF+YI+HLTGYTFGVT Sbjct: 61 GGGGTVGPATMAATAKPDGYTISQIPITVFRLPLMQDVSWNAEKDFTYIVHLTGYTFGVT 120 Query: 130 TNAESQFKTWQDVVDFAKKNPGKVTYATPGTGTSLHVGMEQIALMAGIKLTQVPFKGGAE 189 TNAESQFKTW+DVVDFAK NPGKVTYATPG GTSLH+GMEQIA AGIKLTQVPFKGGAE Sbjct: 121 TNAESQFKTWKDVVDFAKANPGKVTYATPGAGTSLHIGMEQIAGKAGIKLTQVPFKGGAE 180 Query: 190 TNAAVLGQHTMLQADSTGWRPLVDAGKLRLLMVWTGARSPNYPDVPTLKELGYPMVYDSP 249 TNAAVLG+HTMLQADSTGWRPLVDAGKLRLLMVWT RSPN+PD PTLKELGY MVYDSP Sbjct: 181 TNAAVLGKHTMLQADSTGWRPLVDAGKLRLLMVWTSKRSPNFPDAPTLKELGYDMVYDSP 240 Query: 250 FGIAGPKGMDPKIVAKLHDAFKKAIEDPAVIATLAKYDMVPNYKSTEDYRKFVGEVTESE 309 FG+AGPKGMDPKIVAKLHDAFKKAIEDPAVIATLAK+DMV NYK+TEDY+KFVGEV SE Sbjct: 241 FGVAGPKGMDPKIVAKLHDAFKKAIEDPAVIATLAKFDMVANYKNTEDYKKFVGEVIASE 300 Query: 310 RKVIDTLGLAKK 321 RKVIDTLGLAKK Sbjct: 301 RKVIDTLGLAKK 312 >ref|ZP_08629099.1| tricarboxylate transport protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08458.1| tricarboxylate transport protein [Bradyrhizobiaceae bacterium SG-6C] Length = 324 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 241/314 (76%), Positives = 278/314 (88%), Gaps = 4/314 (1%) Query: 8 MVLLAAAGMLVSTAALAQDYPTKPITLIVPWPAGGSTDISMRAIAESASKVLGQPIAVDN 67 V+LAA G + A+AQDYPTKPITLIVPWPAGGSTD+ +RA+AE ASK +GQPI VDN Sbjct: 13 CVVLAALGGI----AVAQDYPTKPITLIVPWPAGGSTDVVLRAMAEVASKDIGQPIIVDN 68 Query: 68 KAGGGGTVGPATMAAGAKPDGYTIAQIPITVFRLPLMQEVSWDPAKDFSYIIHLTGYTFG 127 KAGGGGTVGPATMAA AKPDGYTI+QIPI V RLPLMQ++SWD KDF+YI++LTGYTFG Sbjct: 69 KAGGGGTVGPATMAASAKPDGYTISQIPIPVLRLPLMQDMSWDAGKDFTYILNLTGYTFG 128 Query: 128 VTTNAESQFKTWQDVVDFAKKNPGKVTYATPGTGTSLHVGMEQIALMAGIKLTQVPFKGG 187 VTTN+ESQFKTW+DVV+FAK NPGKVTYATPG+GTSLH+GMEQIA +AGIKLTQVPFKG Sbjct: 129 VTTNSESQFKTWKDVVEFAKANPGKVTYATPGSGTSLHIGMEQIAAIAGIKLTQVPFKGN 188 Query: 188 AETNAAVLGQHTMLQADSTGWRPLVDAGKLRLLMVWTGARSPNYPDVPTLKELGYPMVYD 247 AE+NAAVLG HTMLQ D++GW+PLV+AGKLRLLMVWT R+P++PDVPTL ELGYP+V D Sbjct: 189 AESNAAVLGNHTMLQVDASGWKPLVEAGKLRLLMVWTEKRAPSFPDVPTLTELGYPLVID 248 Query: 248 SPFGIAGPKGMDPKIVAKLHDAFKKAIEDPAVIATLAKYDMVPNYKSTEDYRKFVGEVTE 307 SP+G+AGPKGMDPKIVA+LH+AFKKAI+ P+VIA LAKYDMV NYK+TEDYR FV E Sbjct: 249 SPWGLAGPKGMDPKIVARLHNAFKKAIDAPSVIAVLAKYDMVVNYKNTEDYRAFVAETIA 308 Query: 308 SERKVIDTLGLAKK 321 SE K ++TLGL KK Sbjct: 309 SETKAVETLGLVKK 322 >ref|YP_004157594.1| hypothetical protein Varpa_5327 [Variovorax paradoxus EPS] gb|ADU39483.1| hypothetical protein Varpa_5327 [Variovorax paradoxus EPS] Length = 322 Score = 341 bits (874), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 169/321 (52%), Positives = 222/321 (69%), Gaps = 2/321 (0%) Query: 1 MSHRNRLMV-LLAAAGMLVSTAALAQDYPTKPITLIVPWPAGGSTDISMRAIAESASKVL 59 MS R+ L LAA G+ AALAQ +P KPI L++ +PAGG TDI+MR +A++ASK+L Sbjct: 1 MSRRSLLCAATLAACGLASPLAALAQAFPAKPIKLVIAFPAGGPTDITMRQLADNASKIL 60 Query: 60 GQPIAVDNKAGGGGTVGPATMAAGAKPDGYTIAQIPITVFRLPLMQEVSWDPAKDFSYII 119 GQP+ VDNK G GGT+ PA A+PDGYT+AQIP+ VFRL +++WDP KD +Y++ Sbjct: 61 GQPVIVDNKPGAGGTL-PAQALQTAQPDGYTVAQIPLGVFRLGYTTKINWDPLKDITYVL 119 Query: 120 HLTGYTFGVTTNAESQFKTWQDVVDFAKKNPGKVTYATPGTGTSLHVGMEQIALMAGIKL 179 ++TGY FG+ A S FKTW D V +AK NPGK+TY + G TS H+ E IA AGI+L Sbjct: 120 NVTGYAFGIVVPANSPFKTWADFVAYAKANPGKLTYGSTGNLTSPHLTTEIIAQKAGIEL 179 Query: 180 TQVPFKGGAETNAAVLGQHTMLQADSTGWRPLVDAGKLRLLMVWTGARSPNYPDVPTLKE 239 VP+KG A+ AV+ M ADSTG+ P V+AGKLR+L W R +PD PTLKE Sbjct: 180 QHVPYKGSADLMLAVVSGQLMAAADSTGFAPQVEAGKLRVLNTWGEKRLAKFPDAPTLKE 239 Query: 240 LGYPMVYDSPFGIAGPKGMDPKIVAKLHDAFKKAIEDPAVIATLAKYDMVPNYKSTEDYR 299 LGY +V +SPFGI PKG P++V KLHDAFK+A+E+P+ +A L +YDM+P+Y S+ Y Sbjct: 240 LGYDVVQNSPFGIGAPKGTSPEVVKKLHDAFKQAMEEPSYVAALGRYDMLPDYMSSAQYT 299 Query: 300 KFVGEVTESERKVIDTLGLAK 320 KF + E+ VI+ LGL K Sbjct: 300 KFAQDTVVKEKVVIEKLGLGK 320 >ref|YP_002946562.1| hypothetical protein Vapar_4691 [Variovorax paradoxus S110] gb|ACS21296.1| conserved hypothetical protein [Variovorax paradoxus S110] Length = 324 Score = 330 bits (847), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 167/324 (51%), Positives = 226/324 (69%), Gaps = 4/324 (1%) Query: 1 MSHRN--RLMVLLAAAGMLVSTAALAQD-YPTKPITLIVPWPAGGSTDISMRAIAESASK 57 MS R+ R L AA G+L+S A +P+KP+ L++ +PAGG TDI+MR +A++ASK Sbjct: 1 MSRRSLFRAATLAAACGLLLSPLAALAQAFPSKPVKLVIAFPAGGPTDITMRQLADNASK 60 Query: 58 VLGQPIAVDNKAGGGGTVGPATMAAGAKPDGYTIAQIPITVFRLPLMQEVSWDPAKDFSY 117 +LGQP+ +DNK G GGT+ PA A+PDGYT+AQIP+ VFRL +++WDP KD SY Sbjct: 61 ILGQPVIIDNKPGAGGTL-PAQALQTAQPDGYTVAQIPLGVFRLGYTTKINWDPLKDISY 119 Query: 118 IIHLTGYTFGVTTNAESQFKTWQDVVDFAKKNPGKVTYATPGTGTSLHVGMEQIALMAGI 177 ++++TGY FG+ A+S FKTW D V +AK NPG++TY + G TS H+ E IA AGI Sbjct: 120 VLNVTGYAFGIVVPADSPFKTWADFVAYAKANPGRLTYGSTGNLTSPHLTTELIAQKAGI 179 Query: 178 KLTQVPFKGGAETNAAVLGQHTMLQADSTGWRPLVDAGKLRLLMVWTGARSPNYPDVPTL 237 +L VP+KG A+ AV+ M ADSTG+ P V+AGKLR+L W R +PD PTL Sbjct: 180 QLQHVPYKGSADLMLAVVSGQLMAAADSTGFAPQVEAGKLRVLNTWGEKRLAKFPDAPTL 239 Query: 238 KELGYPMVYDSPFGIAGPKGMDPKIVAKLHDAFKKAIEDPAVIATLAKYDMVPNYKSTED 297 KELGY +V +SPFGI PKG P++V KLHDAFK+A+E+P+ +A+L +YDM+PNY S+ Sbjct: 240 KELGYDIVQNSPFGIGAPKGTPPEVVKKLHDAFKQAMEEPSYVASLGRYDMLPNYMSSAA 299 Query: 298 YRKFVGEVTESERKVIDTLGLAKK 321 Y KF + E+ VI+ LGLAK+ Sbjct: 300 YTKFAQDTVVREKAVIEKLGLAKE 323