BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0001.p (502 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767592.1| hypothetical protein bll0952 [Bradyrhizobium ja... 880 0.0 ref|ZP_08629101.1| tricarboxylate transport membrane protein [Br... 870 0.0 ref|YP_002827143.1| hypothetical protein NGR_c26340 [Sinorhizobi... 562 e-158 ref|NP_773154.1| hypothetical protein bll6514 [Bradyrhizobium ja... 562 e-158 ref|YP_570482.1| hypothetical protein RPD_3357 [Rhodopseudomonas... 557 e-156 >ref|NP_767592.1| hypothetical protein bll0952 [Bradyrhizobium japonicum USDA 110] dbj|BAC46217.1| bll0952 [Bradyrhizobium japonicum USDA 110] Length = 502 Score = 880 bits (2273), Expect = 0.0, Method: Compositional matrix adjust. Identities = 467/502 (93%), Positives = 487/502 (97%) Query: 1 MDTLVNVAHGLGVALLPINLLYCFIGVFIGTLVGVLPGIGPISAMSLLLPVTLSGTPESG 60 MDTLVNVAHG GVALLPINLLYCFIGVFIGTLVGVLPGIGPISAMSLLLPVTLSGTPESG Sbjct: 1 MDTLVNVAHGFGVALLPINLLYCFIGVFIGTLVGVLPGIGPISAMSLLLPVTLSGTPESG 60 Query: 61 IIMMAGIYYGSMYGGSTTSILVNIPGEAASVVTCIDGHQMAKQGRAGPALGISAFGSFIA 120 IIMMAGIYYGSMYGGSTTSILVNIPGEAASVVTCIDGHQMAKQGRAGPALGISAFGSFIA Sbjct: 61 IIMMAGIYYGSMYGGSTTSILVNIPGEAASVVTCIDGHQMAKQGRAGPALGISAFGSFIA 120 Query: 121 GTFALIALMLVAPSLASVAIAFGPAEYFSLMVLGLVVLTFLTQGSMAKALLMACIGVVLG 180 GTFAL+ALMLVAP LAS+AIAFGPAEYFSLMVLGLVVLTFLTQGSM KALLMACIGVVLG Sbjct: 121 GTFALVALMLVAPRLASIAIAFGPAEYFSLMVLGLVVLTFLTQGSMPKALLMACIGVVLG 180 Query: 181 LVGLDSITAQPRLTFGRLELIDGIGLVPVVMGLFGVAEVLLNTEQAIKRDIIKTRINQLL 240 L+GLDSITAQPRLTFGR+ELIDGIGLVPVVMGLFGVAEVLLNTEQAIKRDII +I QLL Sbjct: 181 LIGLDSITAQPRLTFGRMELIDGIGLVPVVMGLFGVAEVLLNTEQAIKRDIINAKITQLL 240 Query: 241 PSKEDWKASAGPVARGTVLGFFLGILPGGGAVVASFASYALEKRLSKHPERFGHGAIEGV 300 P+K DW+ASAGPVARGT+LGF LGILPGGGAVVASFASYALEKRLSK PERFGHGAIEGV Sbjct: 241 PNKADWQASAGPVARGTLLGFLLGILPGGGAVVASFASYALEKRLSKTPERFGHGAIEGV 300 Query: 301 AGPESANNSAAGGAFIPLMTLGIPPNVVMALLLGAFVIHGLQPGPLMISQNPTLFWGIVA 360 AGPESANN+AAGGAFIPLMTLGIPPNVVMALLLGAFVIHGLQPGPL+I+QNP LFWGIVA Sbjct: 301 AGPESANNAAAGGAFIPLMTLGIPPNVVMALLLGAFVIHGLQPGPLLITQNPGLFWGIVA 360 Query: 361 SMYIGNLMLLVLNLPMIGMWVQLLRLPYNVLFPLIILFTIIGVYCSSNNVFDVHVMIAFG 420 SMYIGN+MLL+LNLPMIGMWVQLL+LPYN+LFPLIILFTI+GVYCSSNNVFDV+VMIAFG Sbjct: 361 SMYIGNVMLLILNLPMIGMWVQLLKLPYNILFPLIILFTILGVYCSSNNVFDVYVMIAFG 420 Query: 421 VIGYFMRKLGYEPAPLVLAFVLGPMLENNLRKSLILSQGDLMTFVERPISAICLAFALLL 480 +IGYFMRKLGYEPAPLVLAFVLGPMLENNLRKSLILSQGDL TFV+RPISA CLA AL L Sbjct: 421 IIGYFMRKLGYEPAPLVLAFVLGPMLENNLRKSLILSQGDLWTFVQRPISAACLALALAL 480 Query: 481 LVGPLLPSLRKKRELVALDEGA 502 LV PLLPSLR+KRELVALDEGA Sbjct: 481 LVAPLLPSLRRKRELVALDEGA 502 >ref|ZP_08629101.1| tricarboxylate transport membrane protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08460.1| tricarboxylate transport membrane protein [Bradyrhizobiaceae bacterium SG-6C] Length = 502 Score = 870 bits (2248), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/502 (90%), Positives = 483/502 (96%) Query: 1 MDTLVNVAHGLGVALLPINLLYCFIGVFIGTLVGVLPGIGPISAMSLLLPVTLSGTPESG 60 MD + NV HGLGVAL P+NLLYCFIGVFIGTLVGVLPGIGPISAMSLLLPVTLSGTPESG Sbjct: 1 MDVIANVMHGLGVALQPVNLLYCFIGVFIGTLVGVLPGIGPISAMSLLLPVTLSGTPESG 60 Query: 61 IIMMAGIYYGSMYGGSTTSILVNIPGEAASVVTCIDGHQMAKQGRAGPALGISAFGSFIA 120 IIMMAGIYYGSMYGGSTTSILVNIPGEAASVVTCIDGHQMAKQG+AGPALGISA GSFIA Sbjct: 61 IIMMAGIYYGSMYGGSTTSILVNIPGEAASVVTCIDGHQMAKQGKAGPALGISALGSFIA 120 Query: 121 GTFALIALMLVAPSLASVAIAFGPAEYFSLMVLGLVVLTFLTQGSMAKALLMACIGVVLG 180 GTFALIALM +APSLASVA+AFGPAEYFSLMVLGLVVLTFLTQGSMAKALLMACIGVVLG Sbjct: 121 GTFALIALMFIAPSLASVAVAFGPAEYFSLMVLGLVVLTFLTQGSMAKALLMACIGVVLG 180 Query: 181 LVGLDSITAQPRLTFGRLELIDGIGLVPVVMGLFGVAEVLLNTEQAIKRDIIKTRINQLL 240 L+GLDSITAQPRLTFGRLELIDGIGLVPVVMGLFGVAEVL+N EQ IKRD+I+T+I QLL Sbjct: 181 LIGLDSITAQPRLTFGRLELIDGIGLVPVVMGLFGVAEVLINIEQVIKRDVIETKITQLL 240 Query: 241 PSKEDWKASAGPVARGTVLGFFLGILPGGGAVVASFASYALEKRLSKHPERFGHGAIEGV 300 P+KE+WKASAGPV RGTVLGFFLGILPGGGAVVASFASYALEKRLSK PERFG GAIEGV Sbjct: 241 PNKEEWKASAGPVGRGTVLGFFLGILPGGGAVVASFASYALEKRLSKTPERFGKGAIEGV 300 Query: 301 AGPESANNSAAGGAFIPLMTLGIPPNVVMALLLGAFVIHGLQPGPLMISQNPTLFWGIVA 360 AGPE+ANN+AAGGAFIPLMTLGIPPNVVMALLLGAFVIHGLQPGPLMI+QNP LFWGI+A Sbjct: 301 AGPEAANNAAAGGAFIPLMTLGIPPNVVMALLLGAFVIHGLQPGPLMITQNPGLFWGIIA 360 Query: 361 SMYIGNLMLLVLNLPMIGMWVQLLRLPYNVLFPLIILFTIIGVYCSSNNVFDVHVMIAFG 420 SMYIGNLMLLVLNLP+IGMWVQLL+LPYNVLFPLI+LFTI+GVYCSSNNVFDV+VMI FG Sbjct: 361 SMYIGNLMLLVLNLPLIGMWVQLLKLPYNVLFPLILLFTIVGVYCSSNNVFDVYVMIGFG 420 Query: 421 VIGYFMRKLGYEPAPLVLAFVLGPMLENNLRKSLILSQGDLMTFVERPISAICLAFALLL 480 +IGY MRK GYEPAPLVLAFVLGP+LENNLRKSLILSQGDLMTFVERPISA+CL A +L Sbjct: 421 IIGYMMRKFGYEPAPLVLAFVLGPLLENNLRKSLILSQGDLMTFVERPISAVCLIAAAIL 480 Query: 481 LVGPLLPSLRKKRELVALDEGA 502 L+GPLLPSLR+KRELVALDEGA Sbjct: 481 LIGPLLPSLRRKRELVALDEGA 502 >ref|YP_002827143.1| hypothetical protein NGR_c26340 [Sinorhizobium fredii NGR234] gb|ACP26390.1| hypothetical protein NGR_c26340 [Sinorhizobium fredii NGR234] Length = 500 Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust. Identities = 284/500 (56%), Positives = 379/500 (75%) Query: 1 MDTLVNVAHGLGVALLPINLLYCFIGVFIGTLVGVLPGIGPISAMSLLLPVTLSGTPESG 60 MD L N+ GL VA NL YC +GVF+GT +GVLPG+GP++ +++LLP+T PES Sbjct: 1 MDMLSNLWLGLTVASTLTNLGYCLLGVFLGTAIGVLPGLGPVATIAMLLPLTFGLPPESA 60 Query: 61 IIMMAGIYYGSMYGGSTTSILVNIPGEAASVVTCIDGHQMAKQGRAGPALGISAFGSFIA 120 +IM+AGIYYG+ YGGSTT+ILVN+PGE +SVVT +DGHQ+A+QG+AG AL +A GSFIA Sbjct: 61 LIMLAGIYYGAQYGGSTTAILVNLPGEPSSVVTALDGHQLARQGQAGRALSTAAIGSFIA 120 Query: 121 GTFALIALMLVAPSLASVAIAFGPAEYFSLMVLGLVVLTFLTQGSMAKALLMACIGVVLG 180 GT + I + L AP+LA VA+ FGPAEYF+LMVLGLV + GS+ AL M +G++LG Sbjct: 121 GTASTILIALFAPALAEVALQFGPAEYFALMVLGLVASVVMASGSLLHALGMILVGLLLG 180 Query: 181 LVGLDSITAQPRLTFGRLELIDGIGLVPVVMGLFGVAEVLLNTEQAIKRDIIKTRINQLL 240 +VG D +A PR TFG L DGI V + MG+FG+ E+ N E +R ++ ++ L+ Sbjct: 181 MVGTDVNSAVPRYTFGVPMLADGINFVVLAMGIFGLGEIAANLENEAERTLLTRKVTNLM 240 Query: 241 PSKEDWKASAGPVARGTVLGFFLGILPGGGAVVASFASYALEKRLSKHPERFGHGAIEGV 300 P+++DWK GP+ARGT LG LGILPGGGA +ASF SY+LEKRLS PERFG GAIEGV Sbjct: 241 PTRDDWKRIVGPIARGTALGSVLGILPGGGAALASFGSYSLEKRLSNEPERFGKGAIEGV 300 Query: 301 AGPESANNSAAGGAFIPLMTLGIPPNVVMALLLGAFVIHGLQPGPLMISQNPTLFWGIVA 360 AGPESANN+ A +FIP++TLG+P N VMAL++GA +I G+QPGP ++++ PTLFWG++A Sbjct: 301 AGPESANNAGAQTSFIPMLTLGLPSNSVMALMIGAMLIQGIQPGPSVMTEQPTLFWGLIA 360 Query: 361 SMYIGNLMLLVLNLPMIGMWVQLLRLPYNVLFPLIILFTIIGVYCSSNNVFDVHVMIAFG 420 SM+IGNLMLLVLNLPMIG+WV+++ +PY+ LFP II IGV+ +N++FDV+ M FG Sbjct: 361 SMWIGNLMLLVLNLPMIGLWVRMIAIPYHFLFPSIIALCAIGVFSVNNSIFDVYAMALFG 420 Query: 421 VIGYFMRKLGYEPAPLVLAFVLGPMLENNLRKSLILSQGDLMTFVERPISAICLAFALLL 480 V+GY RKL EPAP++LAF+LGPM+E LR++L+ S+GD F+ RP+SA+ LA A +L Sbjct: 421 VVGYLFRKLDAEPAPMLLAFILGPMMEEFLRRTLLFSKGDPSVFLTRPLSAVLLAIAAIL 480 Query: 481 LVGPLLPSLRKKRELVALDE 500 L+ LP++R+KRE +E Sbjct: 481 LLLVALPAVRRKREEAFQEE 500 >ref|NP_773154.1| hypothetical protein bll6514 [Bradyrhizobium japonicum USDA 110] dbj|BAC51779.1| bll6514 [Bradyrhizobium japonicum USDA 110] Length = 505 Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust. Identities = 278/498 (55%), Positives = 374/498 (75%), Gaps = 2/498 (0%) Query: 1 MDTLVNVAHGLGVALLPINLLYCFIGVFIGTLVGVLPGIGPISAMSLLLPVTLSGTPESG 60 MD N+AHG VAL PINLL C IG +GTLVGVLPGIG I+ +++LLP+T P Sbjct: 2 MDIFANLAHGFAVALSPINLLMCLIGALVGTLVGVLPGIGTIATVAMLLPITFGLPPVGA 61 Query: 61 IIMMAGIYYGSMYGGSTTSILVNIPGEAASVVTCIDGHQMAKQGRAGPALGISAFGSFIA 120 +IM+AGIYYG+ YGGSTTSILVNIPGEA SVVT IDGHQMAKQGRAGPAL I+A GSF A Sbjct: 62 LIMLAGIYYGAQYGGSTTSILVNIPGEATSVVTAIDGHQMAKQGRAGPALAIAAIGSFFA 121 Query: 121 GTFALIALMLVAPSLASVAIAFGPAEYFSLMVLGLVVLTFLTQGSMAKALLMACIGVVLG 180 G A + + ++ L +A+AFGPAEYFSLMVLGL+ L +GS+ KA+ M +G+++ Sbjct: 122 GCVATVLIAVLGAPLTKLALAFGPAEYFSLMVLGLIFAVVLAKGSVLKAIAMIVLGLLMS 181 Query: 181 LVGLDSITAQPRLTFGRLELIDGIGLVPVVMGLFGVAEVLLNTEQA--IKRDIIKTRINQ 238 +VG D T R+ F EL DG+G V MG+FG AE++ N + + RD+++ +I Sbjct: 182 MVGSDIETGASRMAFNIPELADGLGFATVAMGVFGFAEIIRNLDAGAEMNRDLVQQKITG 241 Query: 239 LLPSKEDWKASAGPVARGTVLGFFLGILPGGGAVVASFASYALEKRLSKHPERFGHGAIE 298 L+P+++D + SA + RGTVLG LGILPGGGAV+ASFA+Y LEK+++K+P RFG GAIE Sbjct: 242 LMPTRKDLRDSAPAILRGTVLGSILGILPGGGAVIASFAAYTLEKKIAKNPSRFGRGAIE 301 Query: 299 GVAGPESANNSAAGGAFIPLMTLGIPPNVVMALLLGAFVIHGLQPGPLMISQNPTLFWGI 358 GVA PESANN+AA +FIPL+TLGIPPN VMAL++GA IHG+ PGP ++ + P L WG+ Sbjct: 302 GVAAPESANNAAAQTSFIPLLTLGIPPNAVMALMVGAMTIHGIVPGPQVMQKQPDLVWGM 361 Query: 359 VASMYIGNLMLLVLNLPMIGMWVQLLRLPYNVLFPLIILFTIIGVYCSSNNVFDVHVMIA 418 +ASM+IGNLML+++NLP++G+WV+LLR+PY ++FP I++F IG+Y +N DV + Sbjct: 362 IASMWIGNLMLIIINLPLVGIWVRLLRVPYRLMFPSIVIFCAIGIYSVNNAPVDVILAGV 421 Query: 419 FGVIGYFMRKLGYEPAPLVLAFVLGPMLENNLRKSLILSQGDLMTFVERPISAICLAFAL 478 FG++GY++ K +EPAPL+L VLGP++E NLR++L++S+GD F+ RP+SA+ LA A Sbjct: 422 FGLVGYWLIKHDFEPAPLLLGMVLGPLMEENLRRALLISRGDWSVFLTRPLSAVLLAIAA 481 Query: 479 LLLVGPLLPSLRKKRELV 496 LL+ +LP+LR KR+ V Sbjct: 482 SLLILTVLPALRAKRDEV 499 >ref|YP_570482.1| hypothetical protein RPD_3357 [Rhodopseudomonas palustris BisB5] gb|ABE40581.1| protein of unknown function DUF112, transmembrane [Rhodopseudomonas palustris BisB5] Length = 504 Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust. Identities = 282/502 (56%), Positives = 375/502 (74%), Gaps = 2/502 (0%) Query: 1 MDTLVNVAHGLGVALLPINLLYCFIGVFIGTLVGVLPGIGPISAMSLLLPVTLSGTPESG 60 +D N+A G VA P+NL C +G +GTLVGVLPGIG I+ +++LLP+T P Sbjct: 2 LDLFSNLALGFQVAASPMNLGLCLVGALVGTLVGVLPGIGTIATVAMLLPITFGLPPIGA 61 Query: 61 IIMMAGIYYGSMYGGSTTSILVNIPGEAASVVTCIDGHQMAKQGRAGPALGISAFGSFIA 120 +IM+AGIYYG+ YGGSTTSILVNIPGEA SVVT +DG QMAKQGRAGPAL I+A GSF+A Sbjct: 62 LIMLAGIYYGAQYGGSTTSILVNIPGEATSVVTTLDGFQMAKQGRAGPALAIAAIGSFVA 121 Query: 121 GTFALIALMLVAPSLASVAIAFGPAEYFSLMVLGLVVLTFLTQGSMAKALLMACIGVVLG 180 G FA + + ++ L VA+AFGPAEYFSLMVLGL+ L +GS+ KA++M G++L Sbjct: 122 GCFATVLIAILGAPLTKVALAFGPAEYFSLMVLGLIFAVVLAKGSVLKAIIMIVFGLLLS 181 Query: 181 LVGLDSITAQPRLTFGRLELIDGIGLVPVVMGLFGVAEVLLNTEQAIK--RDIIKTRINQ 238 +VG D T R+TFG EL DG+G V MG+FG AE++ N + + R +++ +I Sbjct: 182 MVGSDLETGASRMTFGIPELADGLGFATVAMGVFGFAEIIRNLDAGSESDRQLVQQKITG 241 Query: 239 LLPSKEDWKASAGPVARGTVLGFFLGILPGGGAVVASFASYALEKRLSKHPERFGHGAIE 298 L+P+K+D SA +ARGT+LG LGILPGGGAV+ASFA+Y LEK++S+ PERFG GAIE Sbjct: 242 LMPTKKDLVDSAPAIARGTMLGSILGILPGGGAVIASFAAYTLEKKISRTPERFGRGAIE 301 Query: 299 GVAGPESANNSAAGGAFIPLMTLGIPPNVVMALLLGAFVIHGLQPGPLMISQNPTLFWGI 358 GVA PESANN+AA +FIPL+TLGIPPN VMAL++GA IHG+ PGP ++ + P L WG+ Sbjct: 302 GVAAPESANNAAAQTSFIPLLTLGIPPNAVMALMVGAMTIHGIVPGPQVMQKQPELVWGM 361 Query: 359 VASMYIGNLMLLVLNLPMIGMWVQLLRLPYNVLFPLIILFTIIGVYCSSNNVFDVHVMIA 418 +ASM+IGNLMLL++NLPM+G+WV+LLR+PY ++FP I++F IG+Y +N DV + Sbjct: 362 IASMWIGNLMLLIINLPMVGIWVRLLRVPYRLMFPAIVVFCAIGIYSVNNAPTDVVLAGI 421 Query: 419 FGVIGYFMRKLGYEPAPLVLAFVLGPMLENNLRKSLILSQGDLMTFVERPISAICLAFAL 478 FG+IGY++ K +EPAPL+L VLGP++E NLR++L++S+GD FV RP+SA LA A Sbjct: 422 FGLIGYWLVKHDFEPAPLLLGMVLGPLMEENLRRALLISRGDASVFVSRPLSATLLAIAA 481 Query: 479 LLLVGPLLPSLRKKRELVALDE 500 LL+ +LPSLR+KRE V ++ Sbjct: 482 GLLILAVLPSLRRKREEVFVES 503