BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0029.p         (115 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001413858.1| quinoprotein glucose dehydrogenase [Parvibac...    88   5e-16
ref|ZP_01616070.1| quinoprotein [marine gamma proteobacterium HT...    82   2e-14
ref|YP_004713262.1| glucose dehydrogenase [Pseudomonas stutzeri ...    81   5e-14
ref|YP_001171530.1| glucose dehydrogenase [Pseudomonas stutzeri ...    81   6e-14
gb|AEA82864.1| glucose dehydrogenase [Pseudomonas stutzeri DSM 4...    80   1e-13

>ref|YP_001413858.1| quinoprotein glucose dehydrogenase [Parvibaculum lavamentivorans
           DS-1]
 gb|ABS64201.1| Quinoprotein glucose dehydrogenase [Parvibaculum lavamentivorans
           DS-1]
          Length = 639

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 54/78 (69%), Gaps = 1/78 (1%)

Query: 11  VGTSEDLAPLGIALNTGTPLVNGVAITAGGLVFTGA-MDAYLRAFDARSGKQLWLGRLPV 69
           +GT  DLAP+ +    GTP   G  +TAGG+VF GA MD YLRAFDA SG++LW GRLP 
Sbjct: 538 LGTVRDLAPVPLPWKLGTPNFGGPIVTAGGVVFIGAAMDDYLRAFDAASGEELWKGRLPA 597

Query: 70  PGVANPMTYLWKGEQYXI 87
            G A PMTY W+G QY +
Sbjct: 598 GGQATPMTYEWEGRQYVV 615


>ref|ZP_01616070.1| quinoprotein [marine gamma proteobacterium HTCC2143]
 gb|EAW33153.1| quinoprotein [marine gamma proteobacterium HTCC2143]
          Length = 676

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/70 (58%), Positives = 51/70 (72%), Gaps = 1/70 (1%)

Query: 10  SVGTSEDLAPLGIALNTGTPLVNGVAITAGGLVFTGA-MDAYLRAFDARSGKQLWLGRLP 68
           ++GT+ DLAPL I LNTGTP + G  +TA G+ F GA MD YLRAFD R+GK++W  RLP
Sbjct: 568 TLGTTRDLAPLPIGLNTGTPNLGGPLMTASGITFIGATMDNYLRAFDNRNGKEVWRTRLP 627

Query: 69  VPGVANPMTY 78
            P  A PM+Y
Sbjct: 628 SPANATPMSY 637



 Score = 34.3 bits (77), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 16  DLAPLGIALNTGTPLVNGVAITAGGLVFTGA-MDA---YLRAFDARSGKQLWLGRLPVPG 71
           ++A +G   +T  P + G  +  GG V  G+ +DA    +RAFDARSGK +W   +  PG
Sbjct: 206 NVAYVGEYQHTSPPAIIGDKVVIGGSVSDGSGIDAPSGVVRAFDARSGKLVWAQDMAPPG 265


>ref|YP_004713262.1| glucose dehydrogenase [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
 gb|AEJ04173.1| glucose dehydrogenase [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
          Length = 796

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/79 (54%), Positives = 56/79 (70%), Gaps = 3/79 (3%)

Query: 12  GTSEDLAPLGIALNTGTPLVNGVAITAGGLVF-TGAMDAYLRAFDARSGKQLWLGRLPVP 70
           GTS D APLGI L  GTP + G  +TAGG+ F +G +D YLRA+D ++GK+LW GRLP  
Sbjct: 694 GTSRDSAPLGIPLPVGTPALGGPIVTAGGVAFMSGTLDYYLRAYDLQNGKELWKGRLPAG 753

Query: 71  GVANPMTYLWK--GEQYXI 87
           G A PMTY+ +  G+QY +
Sbjct: 754 GQATPMTYVSEKTGKQYVV 772


>ref|YP_001171530.1| glucose dehydrogenase [Pseudomonas stutzeri A1501]
 gb|ABP78688.1| glucose dehydrogenase [Pseudomonas stutzeri A1501]
          Length = 796

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/79 (54%), Positives = 56/79 (70%), Gaps = 3/79 (3%)

Query: 12  GTSEDLAPLGIALNTGTPLVNGVAITAGGLVF-TGAMDAYLRAFDARSGKQLWLGRLPVP 70
           GTS D APLGI L  GTP + G  +TAGG+ F +G +D YLRA+D ++GK+LW GRLP  
Sbjct: 694 GTSRDSAPLGIPLPVGTPALGGPIVTAGGVAFMSGTLDYYLRAYDLQNGKELWKGRLPAG 753

Query: 71  GVANPMTYLWK--GEQYXI 87
           G A PMTY+ +  G+QY +
Sbjct: 754 GQATPMTYVSEKTGKQYVV 772


>gb|AEA82864.1| glucose dehydrogenase [Pseudomonas stutzeri DSM 4166]
          Length = 796

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 56/79 (70%), Gaps = 3/79 (3%)

Query: 12  GTSEDLAPLGIALNTGTPLVNGVAITAGGLVF-TGAMDAYLRAFDARSGKQLWLGRLPVP 70
           GTS D APLGI L  GTP + G  +TAGG+ F +G +D YLRA+D ++G++LW GRLP  
Sbjct: 694 GTSRDSAPLGIPLPVGTPALGGPIVTAGGVAFMSGTLDYYLRAYDLQNGRELWKGRLPAG 753

Query: 71  GVANPMTYLWK--GEQYXI 87
           G A PMTY+ +  G+QY +
Sbjct: 754 GQATPMTYVSEKTGKQYVV 772