BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0018.p         (91 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_487355.1| hypothetical protein RPB_3750 [Rhodopseudomonas...   100   8e-20
ref|YP_568859.1| hypothetical protein RPD_1722 [Rhodopseudomonas...    96   2e-18
ref|YP_780513.1| hypothetical protein RPE_1584 [Rhodopseudomonas...    91   4e-17
ref|YP_531424.1| hypothetical protein RPC_1543 [Rhodopseudomonas...    85   3e-15
ref|YP_004107845.1| hypothetical protein Rpdx1_1491 [Rhodopseudo...    84   5e-15

>ref|YP_487355.1| hypothetical protein RPB_3750 [Rhodopseudomonas palustris HaA2]
 gb|ABD08444.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 93

 Score =  100 bits (249), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 48/66 (72%), Positives = 55/66 (83%)

Query: 2  VLLSAPAYAQMPNVNLMPEVKTKTQEEKEQDAVRDKAYKDSLSKIPDAKGSSDPWGVVRS 61
          VLL+ PAYAQMPNVNLMPEV+ K+ EEK QDA+RDKAY++SL KIPDAK  SDPWG VRS
Sbjct: 11 VLLAGPAYAQMPNVNLMPEVQHKSPEEKAQDAIRDKAYRESLRKIPDAKAPSDPWGDVRS 70

Query: 62 DPPKAA 67
          + P  A
Sbjct: 71 NEPATA 76


>ref|YP_568859.1| hypothetical protein RPD_1722 [Rhodopseudomonas palustris BisB5]
 gb|ABE38958.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 95

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/89 (60%), Positives = 65/89 (73%), Gaps = 8/89 (8%)

Query: 2  VLLSAPAYAQ-MPNVNLMPEVKTKTQEEKEQDAVRDKAYKDSLSKIPDAKGSSDPWGVVR 60
          VLL+ PAYAQ MPNVNL+PE++ KT EEK QDA+R+KAY++SL KIPDAK S+DPWG VR
Sbjct: 11 VLLAGPAYAQGMPNVNLVPEIQHKTPEEKAQDAIREKAYRESLRKIPDAKASNDPWGDVR 70

Query: 61 SDPPKAAAHPAKPKTKTGSSAQP--GSAA 87
          S    A      PK KT ++ Q   GSAA
Sbjct: 71 SGDSSAT-----PKAKTATTKQKKNGSAA 94


>ref|YP_780513.1| hypothetical protein RPE_1584 [Rhodopseudomonas palustris BisA53]
 gb|ABJ05533.1| hypothetical protein RPE_1584 [Rhodopseudomonas palustris BisA53]
          Length = 110

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/82 (59%), Positives = 63/82 (76%), Gaps = 3/82 (3%)

Query: 2   VLLSAPAYAQMPNVNLMPEVKTKTQEEKEQDAVRDKAYKDSLSKIPDAKGSSDPWGVVRS 61
           V  S+ A AQMPNVNL+PE+++KT E+ EQD +  KAY+DSL KIPD+K +SDPWG VRS
Sbjct: 31  VSWSSAARAQMPNVNLIPELESKTPEQIEQDKITQKAYRDSLRKIPDSKAASDPWGDVRS 90

Query: 62  -DPPKAAAHPAKPKTKTGSSAQ 82
             PPK  +  AKPK +TG++AQ
Sbjct: 91  AAPPKTTS--AKPKARTGNAAQ 110


>ref|YP_531424.1| hypothetical protein RPC_1543 [Rhodopseudomonas palustris BisB18]
 gb|ABD87105.1| hypothetical protein RPC_1543 [Rhodopseudomonas palustris BisB18]
          Length = 111

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 56/76 (73%), Gaps = 3/76 (3%)

Query: 8   AYAQMPNVNLMPEVKTKTQEEKEQDAVRDKAYKDSLSKIPDAKGSSDPWGVVRS-DPPKA 66
           A AQ PNVNL+PE+K+KT EE EQD + +KAYKDSL KIPD K SSDPWG VRS D P+ 
Sbjct: 38  AEAQTPNVNLIPELKSKTPEEIEQDRITEKAYKDSLRKIPDVKASSDPWGDVRSADTPRT 97

Query: 67  AAHPAKPKTKTGSSAQ 82
           A  PAK K++   SA 
Sbjct: 98  A--PAKSKSRPSHSAN 111


>ref|YP_004107845.1| hypothetical protein Rpdx1_1491 [Rhodopseudomonas palustris DX-1]
 gb|ADU43112.1| hypothetical protein Rpdx1_1491 [Rhodopseudomonas palustris DX-1]
          Length = 88

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 58/82 (70%), Gaps = 6/82 (7%)

Query: 1  VVLLSAPAYAQM--PNVNLMPEVKTKTQEEKEQDAVRDKAYKDSLSKIPDAKGSSDPWGV 58
          + LL+ PA+AQ   P+VNL+PE++ KT EEK QDA+R KAY++SL KIPDA+G SDPWG 
Sbjct: 10 LALLAGPAFAQSEGPHVNLVPEIQHKTPEEKAQDAIRQKAYQESLRKIPDAQGPSDPWGG 69

Query: 59 VRSDPPKAAAHPAKPKTKTGSS 80
          VR     A A   K K KTG +
Sbjct: 70 VRG----AEATQPKAKRKTGQT 87