BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0012.p (327 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772394.1| hypothetical protein bll5754 [Bradyrhizobium ja... 296 3e-78 ref|YP_001241323.1| hypothetical protein BBta_5452 [Bradyrhizobi... 225 1e-56 ref|YP_003888053.1| ECF subfamily RNA polymerase sigma-24 factor... 102 1e-19 ref|YP_001525979.1| hypothetical protein AZC_3063 [Azorhizobium ... 100 5e-19 ref|YP_004012626.1| hypothetical protein Rvan_2303 [Rhodomicrobi... 97 3e-18 >ref|NP_772394.1| hypothetical protein bll5754 [Bradyrhizobium japonicum USDA 110] dbj|BAC51019.1| bll5754 [Bradyrhizobium japonicum USDA 110] Length = 338 Score = 296 bits (758), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 164/330 (49%), Positives = 209/330 (63%), Gaps = 5/330 (1%) Query: 1 MKRLILTSPSGLTLARSGFAEVAVTSAFRFVGGPLPSPGELEAYF-GSRSDKNPVGHWSH 59 MKR+ILTS SG+ L + A++ V FRFV GPLP+ L+ Y G P WS Sbjct: 8 MKRMILTSSSGVGLTYADRADMVVPLIFRFVSGPLPTSHHLDNYLKGGSFRGEPDVRWSD 67 Query: 60 WSAWGQGSQDARARRDLALIEFCDP--YEVIELWFDPGPDDQLQLIWMLDHFRAYPAMVD 117 Q Q RA R+L L+ FC+ E+IELWFDP P++QLQL+W+LD+ RA P MV+ Sbjct: 68 LVV--QSPQTGRAHRELGLVWFCETCGVELIELWFDPSPNNQLQLVWILDYLRAEPYMVE 125 Query: 118 KLKLRLVAFDLLTMHETWRGWDQVPLVNVRSADLEIASACWQAYQATTPEACFDVVHRDL 177 +L+LRLV FDLL V ++V D E+A W+AY+A TPE C ++ RD Sbjct: 126 RLRLRLVDFDLLGADVAGLRERTVRALDVTERDFEVARMAWEAYRAPTPELCLGLLSRDF 185 Query: 178 SGFPLLRPALLDLLRDLPSSRSGLGATEMRLLELVAAGFMGTNALFYLRGFRQRGVFNDM 237 P L+PA+ +LL +LPS +GLGATE RLLEL+A G T LF G + V++ Sbjct: 186 PRLPFLKPAMEELLAELPSPITGLGATEARLLELIARGHNRTRELFQPGGLLETRVYDQW 245 Query: 238 EIGRLLEGLAHGPRPAIAGLDDGLRSIDPDNARRRLEAFQRSRLSVTEFGKAVLAHKADF 297 E+G LLEGLA GP PA+AGLD L ++ P +AR R AF+RSRL +TEFGKAVLA + DF Sbjct: 246 ELGPLLEGLASGPMPAVAGLDPKLATLAPHDARGRNAAFRRSRLLLTEFGKAVLAGREDF 305 Query: 298 TDHNPINRWWGGTHLTNDNLWRWNQSLRKL 327 HNPI RWWGGT LTN+ LWRW+ R L Sbjct: 306 RSHNPIRRWWGGTLLTNERLWRWDGQSRSL 335 >ref|YP_001241323.1| hypothetical protein BBta_5452 [Bradyrhizobium sp. BTAi1] gb|ABQ37417.1| hypothetical protein BBta_5452 [Bradyrhizobium sp. BTAi1] Length = 359 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 135/327 (41%), Positives = 190/327 (58%), Gaps = 5/327 (1%) Query: 1 MKRLILTS--PSGLTLARSGFAEVAVTSAFRFVGGPLPSPGELEAYFGSRSDKNPVGHWS 58 M RL L + PS L RSGFA++ V RFV GPLPS EL A R+ + GHW Sbjct: 1 MTRLFLVADDPSAGALRRSGFADLVVPILHRFVWGPLPSDAELSANLAQRTARRKRGHWL 60 Query: 59 HWSAWGQGSQDARARRDLALIEFCDPYEVIELWFDPGPDDQLQLIWMLDHFRAYPAMVDK 118 +++ +G A R + +E D + +ELW P+DQL LIW+LD+ R + + K Sbjct: 61 DFAS--RGDFKAVGGRSHSFLELVDRCDSVELWMGTRPNDQLVLIWLLDYLRDHAEIATK 118 Query: 119 LKLRLVAFDLLTMHETWRGWDQVPLVNVRSADLEIASACWQAYQATTPEACFDVVHRDLS 178 + LR V L R + V + A L++ WQA++A TP+A D++ +DLS Sbjct: 119 IVLRHVDVPLFDAPAGRRAGRMMAGVELARAHLDLGHLAWQAFRAPTPQAWSDLLKQDLS 178 Query: 179 GFPLLRPALLDLLRDLPSSRSGLGATEMRLLELVAAGFMGT-NALFYLRGFRQRGVFNDM 237 P LR + ++L +LP +GLGA+E+R+LEL++AG+ + L + R QR V++ Sbjct: 179 ALPQLRRCVQEMLDELPGVATGLGASELRILELLSAGYQHPFDLLPHHRDRFQRRVYDYW 238 Query: 238 EIGRLLEGLAHGPRPAIAGLDDGLRSIDPDNARRRLEAFQRSRLSVTEFGKAVLAHKADF 297 E G LL+GLA PAIAGL + S++ + R LE + S LS+T GKA+LA + DF Sbjct: 239 EGGTLLDGLALARVPAIAGLAEWPFSVEMHDRRESLERYTASTLSLTPLGKAILAGEEDF 298 Query: 298 TDHNPINRWWGGTHLTNDNLWRWNQSL 324 + HNPI RWWGGT LTN NLWRW+ L Sbjct: 299 SSHNPIRRWWGGTELTNANLWRWHAVL 325 >ref|YP_003888053.1| ECF subfamily RNA polymerase sigma-24 factor [Cyanothece sp. PCC 7822] gb|ADN14778.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Cyanothece sp. PCC 7822] Length = 334 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 80/284 (28%), Positives = 132/284 (46%), Gaps = 19/284 (6%) Query: 58 SHWSAWGQGSQ--DARARRDLALIEFCDPYEVIELWFDPGPDDQLQLIWMLDHFRAYPAM 115 + W+ W + RD L F Y I LWF+ DQLQLI +L+ F+ Sbjct: 53 AQWNGWVTKEEVLTQFITRDETLANF-HKYSHIILWFEHDLYDQLQLIQILNWFQK--QS 109 Query: 116 VDKLKLRLVAFDLLTMHETWRGWDQVPLVNVRS----------ADLEIASACWQAYQATT 165 +D +L L+ + E+++G Q+ +RS L +A++ W A+ + Sbjct: 110 LDSTELSLICINHFPGIESFKGLGQLNPEQMRSLYETRQPVSTEQLLLAASAWVAFCSPN 169 Query: 166 PEACFDVVHRDLSGFPLLRPALLDLLRDLPSSRSGLGATEMRLLELVAAGFMGTNALFYL 225 P A + + RD++ P LR AL L D PS +GL T+ ++L V G + +F Sbjct: 170 PSAIEEFLKRDINALPFLRNALTRYLEDFPSIFNGLSRTQKQILSAVETGIKSFSEIFRQ 229 Query: 226 RGFRQRGVF-NDMEIGRLLEGLAHGPRPAIAGLDDGLRSIDPDNARRRLEAFQRSRLSVT 284 + F D+++ L L+ P + G+D L + + E F R ++ +T Sbjct: 230 NIDIEDYFFPGDIDVWNYLYQLSSSDDPLLIGVDRELLAFPWQCPTK--EEFLRQKVQLT 287 Query: 285 EFGKAVLAHKADFTDHNPINRWWGGTHLTND-NLWRWNQSLRKL 327 G+ VL + D+ + N I+ W GG HL N +LWRW++ +L Sbjct: 288 SSGRNVLKGQTDWININGIDCWKGGVHLQNKTHLWRWDEQNHQL 331 >ref|YP_001525979.1| hypothetical protein AZC_3063 [Azorhizobium caulinodans ORS 571] dbj|BAF89061.1| hypothetical protein AZC_3063 [Azorhizobium caulinodans ORS 571] Length = 336 Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 88/270 (32%), Positives = 125/270 (46%), Gaps = 21/270 (7%) Query: 72 ARRDLALIEFCDPYEVIELWFDPGPDDQLQLIWMLDHFRAYPAMVDKLKLRLV-AFDLLT 130 A RD A +E + ++LWF+ DQLQLI +L F P ++L L+LV A D L Sbjct: 70 AERD-AQLEIHIAFNEVQLWFEHDLYDQLQLIQLLHFFAREP---ERLGLKLVQAQDYLG 125 Query: 131 MHET--WRGWDQVPLVNVRSADLEIASACWQAYQATTPEACFDVVHRDLSGFPLLRPALL 188 E R L V + LE A W+A+ A TP A + RD P L AL Sbjct: 126 TLEADDIRTLSHCAL-PVTTLQLEAGHAAWEAFTAPTPRALAGLAGRDHPVLPHLGAALQ 184 Query: 189 DLLRDLPSSRSGLGATEMRLLELVAAGFMGTNALF-YLRGFRQRGVFNDMEIGRLLEGLA 247 L +LP+ RSGL TE R+L +A G + +F ++ + DM L+GLA Sbjct: 185 RALEELPAPRSGLSLTEERILRQLADGPKKVHQVFAAVQAMDEARFLADMPFFLRLDGLA 244 Query: 248 HGPRPAIAGLDDGLRSID----------PDNARRRLEAFQRSRLSVTEFGKAVLAHKADF 297 P I GL R+ D P AF R+ + +T G + L + D Sbjct: 245 FAHEPLIEGLP--FRASDCRPFVPSEDAPAPEEMTYRAFARATIKLTPAGISALRGRFDH 302 Query: 298 TDHNPINRWWGGTHLTNDNLWRWNQSLRKL 327 N ++RW GGTHL +WR++++ + L Sbjct: 303 ASTNAVDRWLGGTHLQPGAMWRYDRARQVL 332 >ref|YP_004012626.1| hypothetical protein Rvan_2303 [Rhodomicrobium vannielii ATCC 17100] gb|ADP71527.1| hypothetical protein Rvan_2303 [Rhodomicrobium vannielii ATCC 17100] Length = 331 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 81/248 (32%), Positives = 117/248 (47%), Gaps = 12/248 (4%) Query: 85 YEVIELWFDPGPDDQLQLIWMLDHFRAYPAMVDKLKLRLVAFDLLTMHETWRGWDQVPLV 144 + I LWF+ DQLQL+ +LD F A + + L + ET RG Q + Sbjct: 82 FREIVLWFEHDLYDQLQLVQVLD-FLAGEGRREGVSL--IQSGRYIGTETPRGLKQHLHL 138 Query: 145 NVRSADLEIASA--CWQAYQATTPEACFDVVHRDLSGFPLLRPALLDLLRDLPSSRSGLG 202 R+ D A A W A++A +PE +++ P LR A+L LL +LP R+GL Sbjct: 139 QERATDAHFALARLAWSAFRAPSPEPWANLLRLSTHVLPFLRLAMLRLLEELPDHRTGLS 198 Query: 203 ATEMRLLELVAAGFMGTNALFYLRGFRQRGV---FNDMEIGRLLEGLAHGPRPAIAGLDD 259 TE +L L+ G ++ +R+ V D LL+ L P IAGL+ Sbjct: 199 RTETTILTLIHDGVRHPADIY--DAYRESEVALFMGDWSFYCLLDALGDTSAPFIAGLNG 256 Query: 260 GLRSIDPDNARRRLEAFQRSRLSVTEFGKAVLAHKADFTDHNPINRWWGGTHLTNDNLWR 319 R+ P +A+ SRLS+T G +VL AD H I+R GG +T+ WR Sbjct: 257 --RAFSPGLPEGARDAYMASRLSLTHLGVSVLCGHADALQHRRIDRAIGGVRITSRAPWR 314 Query: 320 WNQSLRKL 327 W+ S R+L Sbjct: 315 WDASARRL 322