BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0005.p (397 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001206898.1| voltage-dependent potassium channel [Bradyrh... 541 e-152 ref|YP_001241318.1| voltage-dependent potassium channel [Bradyrh... 528 e-148 ref|NP_772389.1| hypothetical protein bll5749 [Bradyrhizobium ja... 525 e-147 ref|YP_484999.1| cyclic nucleotide-binding domain-containing pro... 328 7e-88 ref|YP_568497.1| Ion transport protein [Rhodopseudomonas palustr... 322 8e-86 >ref|YP_001206898.1| voltage-dependent potassium channel [Bradyrhizobium sp. ORS 278] emb|CAL78681.1| Putative voltage-dependent potassium channel with a cyclic nucleotide-binding domain [Bradyrhizobium sp. ORS 278] Length = 409 Score = 541 bits (1394), Expect = e-152, Method: Compositional matrix adjust. Identities = 275/400 (68%), Positives = 323/400 (80%), Gaps = 15/400 (3%) Query: 10 TINDPRLRDRLYDLLERHDLPHSGGSHFVRLVIAVIAVDVLAAILGSVPEIDAQVGWLLR 69 ++ P LRDRLY+LLE LP + GS ++L++ VI +DVLA +LGS P+I A GW LR Sbjct: 9 SVRHPDLRDRLYELLEHDHLPSTHGSRLIQLIVVVITLDVLAVVLGSDPDIAASFGWPLR 68 Query: 70 AIEIAAVIAFALEYAARLWSVVGHSLRDMTPARARLEYAFSTLGVIDLLAFLPSAVALAV 129 I+I A+I FA EYAARLWSV GH R +P R RL YA S LGVIDLL+F+P+ +AL + Sbjct: 69 LIKITALIVFATEYAARLWSVAGHMPRRQSPWRDRLAYALSALGVIDLLSFVPATIALGL 128 Query: 130 GDKTALVLFGMLPFLKLVRYSTAMRSLLAALHAERRTLFGCVVILTGAVLLFASLLYAIE 189 GD++ + +LPFLKLVRYS A+RSLL+A+ AERRTL GC+VIL GAVLLFASLLYA+E Sbjct: 129 GDRSLEAVAIVLPFLKLVRYSPALRSLLSAVQAERRTLVGCLVILAGAVLLFASLLYAVE 188 Query: 190 HKVQPDKFGTMPQAMWWAIVTLGTVGYGDVVPITPLGRTVTVVAIVVGFAMIALPVAIIS 249 VQPDKFGT+P AMWWAIVTLGTVGYGDVVP+TPLGR +TVVAIV GFAMIALPVAIIS Sbjct: 189 RDVQPDKFGTIPHAMWWAIVTLGTVGYGDVVPVTPLGRIITVVAIVWGFAMIALPVAIIS 248 Query: 250 TAFADEVRRRDFVVTWGMLARVPLFSHLNAADISDIMRLLRSQTIEAGEVLVRRGDAASS 309 TAFA+E++RRDFVVTWGMLA+VPLFSHLNA++I+DIMRLLR++TIE+GEVLVRRGDAASS Sbjct: 249 TAFAEEIKRRDFVVTWGMLAKVPLFSHLNASEIADIMRLLRARTIESGEVLVRRGDAASS 308 Query: 310 MYFITAGEVEIDLPSQLVRLSDGAFFGEIALLRRPSRSGTVTATRKTKLLVLDAQDFHAL 369 MYFITAGEVEI+LP+Q V+L+DG FFGEIALL R RSGTVTATRKT+LLVLDAQDFHAL Sbjct: 309 MYFITAGEVEIELPTQCVKLADGTFFGEIALLHRTKRSGTVTATRKTRLLVLDAQDFHAL 368 Query: 370 IARXPP---------------GGDLAAAEIAQAPCETDGG 394 IAR P GDLA AE++QA E G Sbjct: 369 IARMPALAAHVRTIAKARMADSGDLAIAELSQAEHEDQAG 408 >ref|YP_001241318.1| voltage-dependent potassium channel [Bradyrhizobium sp. BTAi1] gb|ABQ37412.1| Putative voltage-dependent potassium channel with a cyclic nucleotide-binding domain [Bradyrhizobium sp. BTAi1] Length = 409 Score = 528 bits (1360), Expect = e-148, Method: Compositional matrix adjust. Identities = 274/406 (67%), Positives = 314/406 (77%), Gaps = 17/406 (4%) Query: 6 PLKP--TINDPRLRDRLYDLLERHDLPHSGGSHFVRLVIAVIAVDVLAAILGSVPEIDAQ 63 PL P +I DP LRDRLY+LLE LP S GS VR V+ VI DVLA +L SVP +DA+ Sbjct: 3 PLGPGQSIRDPDLRDRLYELLEHDHLPLSVGSRLVRAVVIVIFADVLATVLASVPHLDAR 62 Query: 64 VGWLLRAIEIAAVIAFALEYAARLWSVVGHSLRDMTPARARLEYAFSTLGVIDLLAFLPS 123 G +++ AV+ F EY ARLWSV GH+ ++P R RL+YAFS LG+IDL AFLP+ Sbjct: 63 FGATFTTVKVMAVLVFGFEYVARLWSVAGHTPLHVSPLRDRLQYAFSALGLIDLCAFLPA 122 Query: 124 AVALAVGDKTALVLFGMLPFLKLVRYSTAMRSLLAALHAERRTLFGCVVILTGAVLLFAS 183 A+ LA GD L + +LPFLKLVRYS AMRSLLAA+ AERRTL GC+ IL GAVLLFAS Sbjct: 123 ALVLAFGDHATLAVLVVLPFLKLVRYSPAMRSLLAAIQAERRTLVGCIAILAGAVLLFAS 182 Query: 184 LLYAIEHKVQPDKFGTMPQAMWWAIVTLGTVGYGDVVPITPLGRTVTVVAIVVGFAMIAL 243 LLYAIE VQPDKFGT+P AMWWAIVTLGTVGYGDVVP+TPLG+ ++V IV G AMIAL Sbjct: 183 LLYAIERNVQPDKFGTIPDAMWWAIVTLGTVGYGDVVPVTPLGKAISVFTIVGGLAMIAL 242 Query: 244 PVAIISTAFADEVRRRDFVVTWGMLARVPLFSHLNAADISDIMRLLRSQTIEAGEVLVRR 303 PVAIIS+AFADEV+RRDFVVTWGMLARVPLFSHL AA+I+DIMRLLR++TIEAGE+LVRR Sbjct: 243 PVAIISSAFADEVKRRDFVVTWGMLARVPLFSHLAAAEIADIMRLLRARTIEAGEILVRR 302 Query: 304 GDAASSMYFITAGEVEIDLPSQLVRLSDGAFFGEIALLRRPSRSGTVTATRKTKLLVLDA 363 GD ASSMYFITAGEVEI+LP+Q VRL+DG FFGEIALL R RSGTV ATRKT+LLVLDA Sbjct: 303 GDVASSMYFITAGEVEIELPTQCVRLADGTFFGEIALLHRTKRSGTVKATRKTRLLVLDA 362 Query: 364 QDFHALIARXPP---------------GGDLAAAEIAQAPCETDGG 394 QDFHALIAR P GDLA AE++Q + G Sbjct: 363 QDFHALIARMPALAAHVTTTAKARMADSGDLAIAELSQVEHDDQPG 408 >ref|NP_772389.1| hypothetical protein bll5749 [Bradyrhizobium japonicum USDA 110] dbj|BAC51014.1| bll5749 [Bradyrhizobium japonicum USDA 110] Length = 453 Score = 525 bits (1353), Expect = e-147, Method: Compositional matrix adjust. Identities = 263/373 (70%), Positives = 306/373 (82%) Query: 2 VATAPLKPTINDPRLRDRLYDLLERHDLPHSGGSHFVRLVIAVIAVDVLAAILGSVPEID 61 V P + DP LRDRLY+LLE L +S GS F++L+I VI +DV+A +L SVP++D Sbjct: 46 VGLVPRGRGLRDPNLRDRLYELLEHDPLAYSVGSRFIQLIIGVIVLDVVAMVLASVPDLD 105 Query: 62 AQVGWLLRAIEIAAVIAFALEYAARLWSVVGHSLRDMTPARARLEYAFSTLGVIDLLAFL 121 AQ G L AI++ AVI FALEYAARLW+V GH+ R + RL YAFS LG+IDL+AFL Sbjct: 106 AQFGALFSAIKVFAVIVFALEYAARLWTVAGHTQRKASALSDRLSYAFSALGIIDLMAFL 165 Query: 122 PSAVALAVGDKTALVLFGMLPFLKLVRYSTAMRSLLAALHAERRTLFGCVVILTGAVLLF 181 P+A+ LA G L G+LPF KL+RYS AMRSLLAA+HAERR L GC+VIL G VL F Sbjct: 166 PAAIVLATGRHATLAALGVLPFFKLIRYSPAMRSLLAAVHAERRALIGCIVILIGVVLTF 225 Query: 182 ASLLYAIEHKVQPDKFGTMPQAMWWAIVTLGTVGYGDVVPITPLGRTVTVVAIVVGFAMI 241 ASLLYAIE VQPDK GT+PQAMWWAIVTLGTVGYGDVVP+T LG+ V+V AI+ GFAMI Sbjct: 226 ASLLYAIERDVQPDKLGTIPQAMWWAIVTLGTVGYGDVVPVTTLGKFVSVFAIISGFAMI 285 Query: 242 ALPVAIISTAFADEVRRRDFVVTWGMLARVPLFSHLNAADISDIMRLLRSQTIEAGEVLV 301 ALPVAIISTAFA+EV+RRDFVVTWGMLARVPLFSHL+A++I+DIMRLLR++TIE GE+LV Sbjct: 286 ALPVAIISTAFAEEVKRRDFVVTWGMLARVPLFSHLSASEIADIMRLLRARTIEQGEILV 345 Query: 302 RRGDAASSMYFITAGEVEIDLPSQLVRLSDGAFFGEIALLRRPSRSGTVTATRKTKLLVL 361 RRGDAA+SMYFITAGEVEI LP+Q VRL+DG FFGEIALL + RSGTVTATRKT+LLVL Sbjct: 346 RRGDAATSMYFITAGEVEIALPTQNVRLTDGTFFGEIALLHKTKRSGTVTATRKTRLLVL 405 Query: 362 DAQDFHALIARXP 374 DAQDFHALI R P Sbjct: 406 DAQDFHALIERMP 418 >ref|YP_484999.1| cyclic nucleotide-binding domain-containing protein [Rhodopseudomonas palustris HaA2] gb|ABD06088.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Rhodopseudomonas palustris HaA2] Length = 408 Score = 328 bits (842), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 176/364 (48%), Positives = 237/364 (65%), Gaps = 6/364 (1%) Query: 17 RDRLYDLLERHDLPHSGGSHFVRLVIAVIAVDVLAAILGSVPEIDAQVGWLLRAIEIAAV 76 R +Y++LE H G ++ + + + +L SVPE+ A+ LRA E+ + Sbjct: 12 RQSVYEILESHARNTRAGPIINGAIVLFLVLSISVTVLESVPELRARYDLPLRATELLCL 71 Query: 77 IAFALEYAARLWSVVGH-SLRDMTPARARLEYAFSTLGVIDLLAFLPSAVAL-AVGDKTA 134 + F++EY+ R+W H R M+ +AR Y S G+ID LA LP VAL +GD Sbjct: 72 VVFSIEYSIRIWIAPEHLPFRPMSSLQARWSYMVSPQGIIDFLAILPLWVALIGLGDLRV 131 Query: 135 LVLFGMLPFLKLVRYSTAMRSLLAALHAERRTLFGCVVILTGAVLLFASLLYAIEHKVQP 194 L++ +L LK RYS+ MRSLL L +ERR L C+VIL A LL A+ ++ E +VQP Sbjct: 132 LIVLRVLRVLKFARYSSGMRSLLDVLASERRALLACLVILACATLLSATAMHIAEGQVQP 191 Query: 195 DKFGTMPQAMWWAIVTLGTVGYGDVVPITPLGRTVTVVAIVVGFAMIALPVAIISTAFAD 254 +K GT+P AMWWAIVTL TVGYGDVVP T +GR + V IV G MIALPV I++TAF Sbjct: 192 EKLGTIPDAMWWAIVTLTTVGYGDVVPATNIGRMIASVTIVGGLIMIALPVGIVATAFTA 251 Query: 255 EVRRRDFVVTWGMLARVPLFSHLNAADISDIMRLLRSQTIEAGEVLVRRGDAASSMYFIT 314 + RRDF+V W M+ARVPLFSHL A DI+DIM+LL+++ ++ G+++ RRG+ A+ MYFI Sbjct: 252 VIHRRDFIVNWSMVARVPLFSHLTAGDIADIMQLLKARQVDRGDLIFRRGEPATEMYFIA 311 Query: 315 AGEVEIDL----PSQLVRLSDGAFFGEIALLRRPSRSGTVTATRKTKLLVLDAQDFHALI 370 GEVEI+L + VRL+ G FFGE+A+L+R RS TV A +LLVLDA D HALI Sbjct: 312 EGEVEIELGPAAKGRRVRLATGHFFGEVAVLKRVERSATVRAVSWVRLLVLDAADLHALI 371 Query: 371 ARXP 374 +R P Sbjct: 372 SREP 375 >ref|YP_568497.1| Ion transport protein [Rhodopseudomonas palustris BisB5] gb|ABE38596.1| Ion transport protein [Rhodopseudomonas palustris BisB5] Length = 419 Score = 322 bits (825), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 171/366 (46%), Positives = 232/366 (63%), Gaps = 6/366 (1%) Query: 15 RLRDRLYDLLERHDLPHSGGSHFVRLVIAVIAVDVLAAILGSVPEIDAQVGWLLRAIEIA 74 R R +Y++LE H G R++I I + + ++ SVP L A+E Sbjct: 11 RARQYIYEILESHAESTRVGVSVNRVIIFFITLSIGVTVVESVPRFREGYEPLFHALEFV 70 Query: 75 AVIAFALEYAARLWSVVGH-SLRDMTPARARLEYAFSTLGVIDLLAFLPSAVA-LAVGDK 132 ++ F++EY R+W H R+ + RA Y S G++D LA +P VA L D Sbjct: 71 CLVFFSIEYYVRIWIAAEHVPYRETSALRAGWAYMISPQGIVDCLAVMPLWVAMLGFDDL 130 Query: 133 TALVLFGMLPFLKLVRYSTAMRSLLAALHAERRTLFGCVVILTGAVLLFASLLYAIEHKV 192 L++ +L LK RYS+ MRSLL L +ERR L C+VIL A L+ A+ ++ +E Sbjct: 131 RVLIILRVLRVLKFARYSSGMRSLLEVLESERRALLACLVILGCATLVSATAMHIVEGHA 190 Query: 193 QPDKFGTMPQAMWWAIVTLGTVGYGDVVPITPLGRTVTVVAIVVGFAMIALPVAIISTAF 252 QPDKFGT+P AMWWAIVTL T+GYGDVVP+T +GR + V IV G MIALPV I++ AF Sbjct: 191 QPDKFGTIPDAMWWAIVTLTTIGYGDVVPVTGVGRMIASVTIVGGLVMIALPVGIVANAF 250 Query: 253 ADEVRRRDFVVTWGMLARVPLFSHLNAADISDIMRLLRSQTIEAGEVLVRRGDAASSMYF 312 +D + RRDF+V W M+ARVPLFSHL A DI+ IM+LL+++ I+ G+V+ RRGD A++MYF Sbjct: 251 SDVIHRRDFIVNWSMVARVPLFSHLTAGDIAHIMQLLQARQIDRGDVIFRRGDPATAMYF 310 Query: 313 ITAGEVEIDL----PSQLVRLSDGAFFGEIALLRRPSRSGTVTATRKTKLLVLDAQDFHA 368 I G+VEI+L + +RL G FFGEIA+L+R RS TV A + +LLVLDA D A Sbjct: 311 IAEGDVEIELGPEEKGRRIRLGTGHFFGEIAVLKRAERSATVKAVSRVRLLVLDAADLRA 370 Query: 369 LIARXP 374 LI+R P Sbjct: 371 LISREP 376