BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0003.p (404 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772387.1| isocitrate dehydrogenase [Bradyrhizobium japoni... 797 0.0 ref|ZP_01046178.1| isocitrate dehydrogenase NADP-dependent [Nitr... 769 0.0 ref|ZP_08630589.1| isocitrate dehydrogenase (NADP) [Bradyrhizobi... 763 0.0 ref|YP_001204807.1| isocitrate dehydrogenase [Bradyrhizobium sp.... 761 0.0 ref|NP_949171.1| isocitrate dehydrogenase [Rhodopseudomonas palu... 760 0.0 >ref|NP_772387.1| isocitrate dehydrogenase [Bradyrhizobium japonicum USDA 110] dbj|BAC51012.1| isocitrate dehydrogenase [NADP] [Bradyrhizobium japonicum USDA 110] Length = 404 Score = 797 bits (2059), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/404 (94%), Positives = 391/404 (96%) Query: 1 MAKIKVSNPVVELDGDEMTRIIWQYIKDKLINPFLDVELLYFDLGMEYRDETNDQVTIDA 60 MAKIKVSNPVVELDGDEMTRIIWQYIKDKLI PFLDVEL+YFDLGMEYRD TNDQVTIDA Sbjct: 1 MAKIKVSNPVVELDGDEMTRIIWQYIKDKLITPFLDVELMYFDLGMEYRDHTNDQVTIDA 60 Query: 61 AEAIKKVGVGVKCATITPDEARVKEFGLKQMWKSPNGTIRNILGGCIFREPIICKNVPRL 120 AEAIKKVGVGVKCATITPDEARVKEF LKQMWKSPNGTIRNILGG IFREPIICKNVPRL Sbjct: 61 AEAIKKVGVGVKCATITPDEARVKEFNLKQMWKSPNGTIRNILGGVIFREPIICKNVPRL 120 Query: 121 VPGWTKPIIIGRHAYGDQYRATDIKFPGKGTLSLKFVGEDGTVIEKEVFKAPGAGVAMEM 180 VPGWTKPIIIGRHAYGDQYRATD KFPGKGTLS+KFVGEDGTVIEKEVFKAPGAGVAMEM Sbjct: 121 VPGWTKPIIIGRHAYGDQYRATDFKFPGKGTLSMKFVGEDGTVIEKEVFKAPGAGVAMEM 180 Query: 181 YNLDDSITDFARASFNYGLMRNYPVYLSTKNTILKVYDGRFKDIFQDVFDREFKKEFDAK 240 YNLDDSI DFARAS NYGL+RNYPVYLSTKNTILKVYDGRFKDIFQD++DREFKKEF+AK Sbjct: 181 YNLDDSIIDFARASLNYGLLRNYPVYLSTKNTILKVYDGRFKDIFQDIYDREFKKEFEAK 240 Query: 241 GLTYEHRLIDDMVASALKWSGGYVWACKNYDGDVQSDTVAQGYGSLGLMTSVLLTPDGKT 300 GLTYEHRLIDDMVASALKWSGGYVWACKNYDGDVQSDTVAQGYGSLGLMTSVLLTPDGKT Sbjct: 241 GLTYEHRLIDDMVASALKWSGGYVWACKNYDGDVQSDTVAQGYGSLGLMTSVLLTPDGKT 300 Query: 301 VEAEAAHGTVTRHYREHQKGKETSTNSIASIFAWTRGLAHRAKLDNNEALAKFATTLEKV 360 VEAEAAHGTVTRHYREHQKGKETSTNSIASIFAWTRGLAHRAKLDNN LAKFA TLEKV Sbjct: 301 VEAEAAHGTVTRHYREHQKGKETSTNSIASIFAWTRGLAHRAKLDNNAELAKFANTLEKV 360 Query: 361 CVATVEEGYMTKDLALLVGADQRWLSTTGFLDKVSDNLVKAIAA 404 CV TVE GYMTKDLALLVGADQRWLSTTGFLDKV++NL KA+AA Sbjct: 361 CVDTVEAGYMTKDLALLVGADQRWLSTTGFLDKVAENLTKAMAA 404 >ref|ZP_01046178.1| isocitrate dehydrogenase NADP-dependent [Nitrobacter sp. Nb-311A] gb|EAQ35982.1| isocitrate dehydrogenase NADP-dependent [Nitrobacter sp. Nb-311A] Length = 405 Score = 770 bits (1987), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/403 (89%), Positives = 389/403 (96%) Query: 1 MAKIKVSNPVVELDGDEMTRIIWQYIKDKLINPFLDVELLYFDLGMEYRDETNDQVTIDA 60 MAKIKV+NPVV+LDGDEMTRIIW+YIKDKLI+PFLD+EL+YFDLGME+RDET+D++T++A Sbjct: 1 MAKIKVTNPVVDLDGDEMTRIIWKYIKDKLIHPFLDIELMYFDLGMEFRDETDDRITVEA 60 Query: 61 AEAIKKVGVGVKCATITPDEARVKEFGLKQMWKSPNGTIRNILGGCIFREPIICKNVPRL 120 A AIKKVGVGVKCATITPDEARVKEFGLK MWKSPNGTIRNILGG IFREPIICKNVPRL Sbjct: 61 ANAIKKVGVGVKCATITPDEARVKEFGLKHMWKSPNGTIRNILGGVIFREPIICKNVPRL 120 Query: 121 VPGWTKPIIIGRHAYGDQYRATDIKFPGKGTLSLKFVGEDGTVIEKEVFKAPGAGVAMEM 180 VPGWTKPIIIGRHAYGDQYRATDI+FPGKGTLS+KFVGEDGTVIE+EVFK PG GVAMEM Sbjct: 121 VPGWTKPIIIGRHAYGDQYRATDIRFPGKGTLSMKFVGEDGTVIEREVFKTPGPGVAMEM 180 Query: 181 YNLDDSITDFARASFNYGLMRNYPVYLSTKNTILKVYDGRFKDIFQDVFDREFKKEFDAK 240 YNLDDSI DFARASFNYGL+R YPVYLSTKNTILKVYDGRFKDIFQD++DREFK +F+A+ Sbjct: 181 YNLDDSIVDFARASFNYGLLRGYPVYLSTKNTILKVYDGRFKDIFQDIYDREFKTQFEAR 240 Query: 241 GLTYEHRLIDDMVASALKWSGGYVWACKNYDGDVQSDTVAQGYGSLGLMTSVLLTPDGKT 300 LTYEHRLIDDMVASALKWSGGYVWACKNYDGDVQSDTVAQGYGSLGLMTSVLLTPDG+T Sbjct: 241 KLTYEHRLIDDMVASALKWSGGYVWACKNYDGDVQSDTVAQGYGSLGLMTSVLLTPDGQT 300 Query: 301 VEAEAAHGTVTRHYREHQKGKETSTNSIASIFAWTRGLAHRAKLDNNEALAKFATTLEKV 360 VEAEAAHGTVTRHYREHQKGKETSTNSIASIFAWTRGL+HRAKLD+NEALA FATTLEKV Sbjct: 301 VEAEAAHGTVTRHYREHQKGKETSTNSIASIFAWTRGLSHRAKLDDNEALANFATTLEKV 360 Query: 361 CVATVEEGYMTKDLALLVGADQRWLSTTGFLDKVSDNLVKAIA 403 CV TVE G+MTKDLALLVG DQRWLSTTGFLDKV+DNL KA+A Sbjct: 361 CVDTVEAGFMTKDLALLVGPDQRWLSTTGFLDKVADNLTKAMA 403 >ref|ZP_08630589.1| isocitrate dehydrogenase (NADP) [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06968.1| isocitrate dehydrogenase (NADP) [Bradyrhizobiaceae bacterium SG-6C] Length = 404 Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/404 (90%), Positives = 386/404 (95%) Query: 1 MAKIKVSNPVVELDGDEMTRIIWQYIKDKLINPFLDVELLYFDLGMEYRDETNDQVTIDA 60 MAKIKV+NPVVELDGDEMTRIIWQYIKDKLINPFLDV+L Y+DLG+EYRD+TNDQVT+DA Sbjct: 1 MAKIKVTNPVVELDGDEMTRIIWQYIKDKLINPFLDVKLEYYDLGIEYRDKTNDQVTVDA 60 Query: 61 AEAIKKVGVGVKCATITPDEARVKEFGLKQMWKSPNGTIRNILGGCIFREPIICKNVPRL 120 A AIKK GVGVKCATITPDEARVKEF LK+MWKSPNGTIRNILGG IFREPIICKNVPRL Sbjct: 61 ANAIKKHGVGVKCATITPDEARVKEFNLKEMWKSPNGTIRNILGGVIFREPIICKNVPRL 120 Query: 121 VPGWTKPIIIGRHAYGDQYRATDIKFPGKGTLSLKFVGEDGTVIEKEVFKAPGAGVAMEM 180 VPGWTKPIIIGRHA+GDQYRATDIKFPGKG L++KFVGEDGTVIE+EVFKAPGAGVAM M Sbjct: 121 VPGWTKPIIIGRHAFGDQYRATDIKFPGKGVLTMKFVGEDGTVIEREVFKAPGAGVAMGM 180 Query: 181 YNLDDSITDFARASFNYGLMRNYPVYLSTKNTILKVYDGRFKDIFQDVFDREFKKEFDAK 240 YNLDDSI DFARAS NYGL R YPVYLSTKNTILKVYDGRFKDIFQ+++D EFKK+F+AK Sbjct: 181 YNLDDSIRDFARASMNYGLSRGYPVYLSTKNTILKVYDGRFKDIFQEIYDTEFKKDFEAK 240 Query: 241 GLTYEHRLIDDMVASALKWSGGYVWACKNYDGDVQSDTVAQGYGSLGLMTSVLLTPDGKT 300 GLTYEHRLIDDMVASALKWSGGYVWACKNYDGDVQSDTVAQGYGSLGLMTSVLLTPDGK Sbjct: 241 GLTYEHRLIDDMVASALKWSGGYVWACKNYDGDVQSDTVAQGYGSLGLMTSVLLTPDGKV 300 Query: 301 VEAEAAHGTVTRHYREHQKGKETSTNSIASIFAWTRGLAHRAKLDNNEALAKFATTLEKV 360 VEAEAAHGTVTRHYREHQKGKETSTNSIASIFAWT+GLAHRAKLDNNE LAKFA TLEKV Sbjct: 301 VEAEAAHGTVTRHYREHQKGKETSTNSIASIFAWTQGLAHRAKLDNNEELAKFAKTLEKV 360 Query: 361 CVATVEEGYMTKDLALLVGADQRWLSTTGFLDKVSDNLVKAIAA 404 CV TVE G+MTKDLALLVGADQRWLSTTGFLDKV++NL KA+AA Sbjct: 361 CVDTVEAGFMTKDLALLVGADQRWLSTTGFLDKVAENLNKAMAA 404 >ref|YP_001204807.1| isocitrate dehydrogenase [Bradyrhizobium sp. ORS 278] emb|CAL76570.1| isocitrate dehydrogenase [NADP] (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) [Bradyrhizobium sp. ORS 278] Length = 404 Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/404 (88%), Positives = 386/404 (95%) Query: 1 MAKIKVSNPVVELDGDEMTRIIWQYIKDKLINPFLDVELLYFDLGMEYRDETNDQVTIDA 60 MAKIKV+NPVVELDGDEMTRIIWQYIKDKLINPFL+++L Y+DLGME RD+TNDQ+TIDA Sbjct: 1 MAKIKVTNPVVELDGDEMTRIIWQYIKDKLINPFLEIDLQYYDLGMESRDKTNDQITIDA 60 Query: 61 AEAIKKVGVGVKCATITPDEARVKEFGLKQMWKSPNGTIRNILGGCIFREPIICKNVPRL 120 A AIKKVGVGVKCATITPDEARVKEFGLK+MWKSPNGTIRNILGG +FREPIICKNVPRL Sbjct: 61 ANAIKKVGVGVKCATITPDEARVKEFGLKEMWKSPNGTIRNILGGVVFREPIICKNVPRL 120 Query: 121 VPGWTKPIIIGRHAYGDQYRATDIKFPGKGTLSLKFVGEDGTVIEKEVFKAPGAGVAMEM 180 VPGWTKPIIIGRHAYGDQYRATD KFPGKGTLS+KFVGEDGTVIE+EVFKAPG G+AMEM Sbjct: 121 VPGWTKPIIIGRHAYGDQYRATDFKFPGKGTLSMKFVGEDGTVIEREVFKAPGPGIAMEM 180 Query: 181 YNLDDSITDFARASFNYGLMRNYPVYLSTKNTILKVYDGRFKDIFQDVFDREFKKEFDAK 240 YNLDDSI DFARASFN GL +NY VYLSTKNTILKVYDGRFKD+FQ+V+D+EFK +F+AK Sbjct: 181 YNLDDSIVDFARASFNMGLAKNYSVYLSTKNTILKVYDGRFKDLFQEVYDKEFKDKFEAK 240 Query: 241 GLTYEHRLIDDMVASALKWSGGYVWACKNYDGDVQSDTVAQGYGSLGLMTSVLLTPDGKT 300 +TYEHRLIDDMVA+ALKWSGGYVWACKNYDGDVQSDTVAQGYGSLGLMTSVLLTPDG T Sbjct: 241 KITYEHRLIDDMVAAALKWSGGYVWACKNYDGDVQSDTVAQGYGSLGLMTSVLLTPDGNT 300 Query: 301 VEAEAAHGTVTRHYREHQKGKETSTNSIASIFAWTRGLAHRAKLDNNEALAKFATTLEKV 360 VEAEAAHGTVTRH+REHQKGKETSTNSIASIFAWTRGL+HRAKLDNN LAKFA+TLEKV Sbjct: 301 VEAEAAHGTVTRHFREHQKGKETSTNSIASIFAWTRGLSHRAKLDNNAELAKFASTLEKV 360 Query: 361 CVATVEEGYMTKDLALLVGADQRWLSTTGFLDKVSDNLVKAIAA 404 CV TVE GYMTKDLALLVGADQRWLSTTGFLDK+++NL KA+AA Sbjct: 361 CVDTVEAGYMTKDLALLVGADQRWLSTTGFLDKIAENLTKAMAA 404 >ref|NP_949171.1| isocitrate dehydrogenase [Rhodopseudomonas palustris CGA009] emb|CAE29275.1| NADP-dependent isocitrate dehydrogenase [Rhodopseudomonas palustris CGA009] Length = 408 Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/402 (89%), Positives = 381/402 (94%) Query: 1 MAKIKVSNPVVELDGDEMTRIIWQYIKDKLINPFLDVELLYFDLGMEYRDETNDQVTIDA 60 MAKIKV NPVVELDGDEMTRIIWQ IKDKLI PFLDVEL+YFDLGME+RD+T+DQVTIDA Sbjct: 1 MAKIKVKNPVVELDGDEMTRIIWQMIKDKLITPFLDVELMYFDLGMEHRDKTDDQVTIDA 60 Query: 61 AEAIKKVGVGVKCATITPDEARVKEFGLKQMWKSPNGTIRNILGGCIFREPIICKNVPRL 120 A AIK+VGVGVKCATITPDEARVKEFGLK MWKSPNGTIRNILGG IFREPIICKNVPRL Sbjct: 61 ANAIKQVGVGVKCATITPDEARVKEFGLKSMWKSPNGTIRNILGGVIFREPIICKNVPRL 120 Query: 121 VPGWTKPIIIGRHAYGDQYRATDIKFPGKGTLSLKFVGEDGTVIEKEVFKAPGAGVAMEM 180 VPGWTKPI+IGRHAYGDQYRATDIKFPG GTL++KFVGEDG+VIE+EVFKAPGAGVAM M Sbjct: 121 VPGWTKPIVIGRHAYGDQYRATDIKFPGPGTLTMKFVGEDGSVIEREVFKAPGAGVAMSM 180 Query: 181 YNLDDSITDFARASFNYGLMRNYPVYLSTKNTILKVYDGRFKDIFQDVFDREFKKEFDAK 240 YNLD+SI DFARAS NYGLMRNYPVYLSTKNTI+KVYDGRFKDIFQ++FD EFKKE+DAK Sbjct: 181 YNLDESIKDFARASLNYGLMRNYPVYLSTKNTIMKVYDGRFKDIFQEIFDAEFKKEYDAK 240 Query: 241 GLTYEHRLIDDMVASALKWSGGYVWACKNYDGDVQSDTVAQGYGSLGLMTSVLLTPDGKT 300 GLTYEHRLIDDMVASALKWSGGYVWACKNYDGDVQSDTVAQGYGSLGLMTSVL+TPDGKT Sbjct: 241 GLTYEHRLIDDMVASALKWSGGYVWACKNYDGDVQSDTVAQGYGSLGLMTSVLMTPDGKT 300 Query: 301 VEAEAAHGTVTRHYREHQKGKETSTNSIASIFAWTRGLAHRAKLDNNEALAKFATTLEKV 360 VEAEAAHGTVTRHYREHQKGK TSTNSIASIFAWTRGLAHRAKLD+NE LA+FA LEKV Sbjct: 301 VEAEAAHGTVTRHYREHQKGKATSTNSIASIFAWTRGLAHRAKLDSNEELARFADLLEKV 360 Query: 361 CVATVEEGYMTKDLALLVGADQRWLSTTGFLDKVSDNLVKAI 402 CV TVE G MTKDLALLVGADQRWLST GFLDKV+ NL KA+ Sbjct: 361 CVDTVEAGAMTKDLALLVGADQRWLSTEGFLDKVAQNLNKAM 402