BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0012.p (506 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001241128.1| hypothetical protein BBta_5233 [Bradyrhizobi... 662 0.0 ref|YP_001204983.1| hypothetical protein BRADO2939 [Bradyrhizobi... 637 e-180 ref|YP_577822.1| hypothetical protein Nham_2580 [Nitrobacter ham... 622 e-176 ref|NP_772227.1| hypothetical protein blr5587 [Bradyrhizobium ja... 618 e-175 ref|YP_533006.1| hypothetical protein RPC_3145 [Rhodopseudomonas... 602 e-170 >ref|YP_001241128.1| hypothetical protein BBta_5233 [Bradyrhizobium sp. BTAi1] gb|ABQ37222.1| putative membrane protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 466 Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/454 (73%), Positives = 375/454 (82%) Query: 3 FWAWSAPIKGGNIINTRSLGARLTDARSVWIATIAIPLLLLAPAFWNGYPLLQWDTGGYL 62 FW W + I NT+ L R ++A S W+ I IP+ L+APA WNGYPLLQWDTGGYL Sbjct: 2 FWPWCSEPGDAGISNTQILDERASEAGSAWLPLIVIPIFLVAPALWNGYPLLQWDTGGYL 61 Query: 63 ARWYEGYLVPSRSTVFGIYLHVGETSDFWLNLGIQTLATLWILQLTLRVLGLARPVRLIA 122 ARWYEGYLVPSRSTVFG+YLH GE S FWLNLG+Q LATLWILQLTLRVLGLA+P+RL+ Sbjct: 62 ARWYEGYLVPSRSTVFGLYLHWGEGSSFWLNLGLQALATLWILQLTLRVLGLAQPLRLLW 121 Query: 123 ISLALIATTALPWLASMLLTDIFAGLSVLALFILILHGERISTLEKAVLFAFIAFSAATH 182 I L LI TTALPW+ASMLLTDIFAGLSVLALFIL+ +RIS LEK LF F+AF++ATH Sbjct: 122 IGLLLILTTALPWIASMLLTDIFAGLSVLALFILVTQAQRISPLEKCALFGFVAFASATH 181 Query: 183 SATLAVLLGLCCVGWMLRPWLGRRIPVAGLVQGSLTTVAGAAMLLAANFALSGQLAWTPG 242 SATL VL GLCC GWM PWL R+I ++GLVQ SLT VAGAAMLLAAN ALSGQLAWTPG Sbjct: 182 SATLGVLFGLCCAGWMAYPWLRRQIALSGLVQASLTIVAGAAMLLAANVALSGQLAWTPG 241 Query: 243 GYGVAFGRMLQDGIVAQYLHDHCATEKLKLCPYRDELPPTADDFLWGHSMFNTLGRFKGL 302 G GVAFGRMLQDGIVAQYL DHCA EKLKLCPYR+ELPPTADDFLWG+SMFN LGRF+G+ Sbjct: 242 GTGVAFGRMLQDGIVAQYLKDHCAREKLKLCPYRNELPPTADDFLWGNSMFNKLGRFEGM 301 Query: 303 NDEMGYIVLRSLAEYPEWQAKAALTATADQLMHVATGEGSNGWIPHTYGIIERYIPRQVA 362 NDEMG+IV +SLA YP WQAKAA AT +QL+HVAT EG+NGW+PHTYGIIERYIP Q Sbjct: 302 NDEMGFIVKQSLAAYPLWQAKAAAVATVEQLLHVATDEGTNGWVPHTYGIIERYIPSQTK 361 Query: 363 PMRAARQQRWHLDFTAINRIHVPVALGSMLLVVILFGRGLWQRRLDDLTLLAGTVTLALL 422 MRAA QQ W ++F +N +HVPVALGSML V + +W+RR DD+ LLA TVTLALL Sbjct: 362 QMRAAHQQHWEINFAVVNWLHVPVALGSMLAVAAIAAHAIWRRRRDDVALLAVTVTLALL 421 Query: 423 GNAFVCGVISGPHDRYGARMVWVATFVVLIAAAR 456 GNA +CGVISGPHDRYGAR+VW+A+F LIAAAR Sbjct: 422 GNAVICGVISGPHDRYGARLVWIASFTALIAAAR 455 >ref|YP_001204983.1| hypothetical protein BRADO2939 [Bradyrhizobium sp. ORS 278] emb|CAL76746.1| conserved hypothetical protein; putative membrane protein [Bradyrhizobium sp. ORS 278] Length = 471 Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust. Identities = 332/468 (70%), Positives = 381/468 (81%), Gaps = 6/468 (1%) Query: 3 FWA-WSAPIKGGNIINTRSLGARLTDAR-SVWIATIAIPLLLLAPAFWNGYPLLQWDTGG 60 FW WS + G I N + L R T+A + W+ I +PL L+APA WNGYPLLQWDTGG Sbjct: 2 FWPRWSGTGEAG-ISNIQILDERATEAGLAWWVPVIVLPLFLVAPALWNGYPLLQWDTGG 60 Query: 61 YLARWYEGYLVPSRSTVFGIYLHVGETSDFWLNLGIQTLATLWILQLTLRVLGLARPVRL 120 YLARWYEGYLVPSRSTVFG+YLH GE S FWLNLG+Q LATLWI+QLTLRVLGLA+P+RL Sbjct: 61 YLARWYEGYLVPSRSTVFGLYLHYGEGSSFWLNLGLQALATLWIVQLTLRVLGLAQPLRL 120 Query: 121 IAISLALIATTALPWLASMLLTDIFAGLSVLALFILILHGERISTLEKAVLFAFIAFSAA 180 + + L LI TTALPWLASMLLTDIFAGLSVLALFIL+ R S LEK LF F+AF++A Sbjct: 121 LWVGLLLILTTALPWLASMLLTDIFAGLSVLALFILVTQSGRTSVLEKGALFGFVAFASA 180 Query: 181 THSATLAVLLGLCCVGWMLRPWLGRRIPVAGLVQGSLTTVAGAAMLLAANFALSGQLAWT 240 THSATL VL GLCC GW+ P+L R+I ++GLVQ SLT V GAAMLLAANFALSGQLAWT Sbjct: 181 THSATLGVLFGLCCAGWIALPFLRRQIALSGLVQASLTIVVGAAMLLAANFALSGQLAWT 240 Query: 241 PGGYGVAFGRMLQDGIVAQYLHDHCATEKLKLCPYRDELPPTADDFLWGHSMFNTLGRFK 300 PGG GVAFGRMLQDGIVAQYL+DHC EKLKLCPYR+ELPPTADDFLWG+SMFN LGRF+ Sbjct: 241 PGGTGVAFGRMLQDGIVAQYLNDHCGHEKLKLCPYRNELPPTADDFLWGNSMFNKLGRFE 300 Query: 301 GLNDEMGYIVLRSLAEYPEWQAKAALTATADQLMHVATGEGSNGWIPHTYGIIERYIPRQ 360 G+N+EMGYIV +SLA YP WQAKAA AT +QLMHVATGEG++GW+PHTYGIIERYIP Q Sbjct: 301 GMNEEMGYIVKQSLAAYPLWQAKAAAIATGEQLMHVATGEGTSGWVPHTYGIIERYIPSQ 360 Query: 361 VAPMRAARQQRWHLDFTAINRIHVPVALGSMLLVVILFGRGLWQRRLDDLTLLAGTVTLA 420 + MRAA QQ W ++F +N +HVPVAL SML + +W+RR DD+ LLA TVTLA Sbjct: 361 LRQMRAAHQQHWEINFAVVNWLHVPVALASMLAAAAIAAHAIWRRRRDDIALLAVTVTLA 420 Query: 421 LLGNAFVCGVISGPHDRYGARMVWVATFVVLIAAARAFARD---EAGD 465 LLGNA +CGVISGPHDRYGAR+VW+ATF VLIAAA+ F+ + EA D Sbjct: 421 LLGNAVICGVISGPHDRYGARLVWIATFTVLIAAAKWFSGERTTEAAD 468 >ref|YP_577822.1| hypothetical protein Nham_2580 [Nitrobacter hamburgensis X14] gb|ABE63362.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 478 Score = 622 bits (1604), Expect = e-176, Method: Compositional matrix adjust. Identities = 315/457 (68%), Positives = 376/457 (82%), Gaps = 4/457 (0%) Query: 8 APIKGGNIINTRS---LGARLTDARSVWIATIAIPLLLLAPAFWNGYPLLQWDTGGYLAR 64 AP G I+TRS L R A WIA I IP+LLLAPA WNGYPLL++DTGGYLAR Sbjct: 13 APPTGETPISTRSTRVLYTRAAAAPWAWIAAIVIPVLLLAPAIWNGYPLLEYDTGGYLAR 72 Query: 65 WYEGYLVPSRSTVFGIYLHVGETSDFWLNLGIQTLATLWILQLTLRVLGLARPVRLIAIS 124 WYEGYL PSRSTV+GIYLH+G+ S FWLNL Q L TLWIL LTLRVL LA+P+RL+AI+ Sbjct: 73 WYEGYLEPSRSTVYGIYLHLGKDSFFWLNLACQALLTLWILHLTLRVLSLAQPLRLLAIA 132 Query: 125 LALIATTALPWLASMLLTDIFAGLSVLALFILILHGERISTLEKAVLFAFIAFSAATHSA 184 + L TALPWLASMLLTDIFAGL VLALFIL++H ++ST+E+ LF + +F+AATH+A Sbjct: 133 VILTLATALPWLASMLLTDIFAGLGVLALFILVVHNGKLSTIERVSLFLYTSFAAATHTA 192 Query: 185 TLAVLLGLCCVGWMLRPWLGRRIPVAGLVQGSLTTVAGAAMLLAANFALSGQLAWTPGGY 244 T VLLGLCC GW+++PWLGRR+P+AGL+QG LT VAGAAMLLAAN+ALSG+LAWTPGG Sbjct: 193 TFGVLLGLCCAGWVVKPWLGRRLPIAGLIQGCLTLVAGAAMLLAANYALSGRLAWTPGGA 252 Query: 245 GVAFGRMLQDGIVAQYLHDHCATEKLKLCPYRDELPPTADDFLWGH-SMFNTLGRFKGLN 303 GV+FGRM+QDGIVA+YL+DHC KLKLCPYR++LP TADDFLWG+ S+FN LGRF+G+N Sbjct: 253 GVSFGRMMQDGIVARYLNDHCDKIKLKLCPYRNQLPATADDFLWGNDSVFNKLGRFEGMN 312 Query: 304 DEMGYIVLRSLAEYPEWQAKAALTATADQLMHVATGEGSNGWIPHTYGIIERYIPRQVAP 363 EM +I ++LA YP WQ +AA+ ATA+QL+ V TGEG+ GWIPHTYGIIERY+P QV Sbjct: 313 GEMEFIATQALAAYPLWQTEAAVEATAEQLVQVGTGEGTTGWIPHTYGIIERYLPEQVKA 372 Query: 364 MRAARQQRWHLDFTAINRIHVPVALGSMLLVVILFGRGLWQRRLDDLTLLAGTVTLALLG 423 MRAARQQ W++ F AIN IH+PVAL SMLL+ + LW+RRLDD+ LLA TV +ALLG Sbjct: 373 MRAARQQHWNIKFAAINWIHIPVALTSMLLLAGIALAALWRRRLDDVELLAATVCVALLG 432 Query: 424 NAFVCGVISGPHDRYGARMVWVATFVVLIAAARAFAR 460 NAF+CGVISGPH+RYGARMVW+ATFVVLIAAAR+ A Sbjct: 433 NAFICGVISGPHNRYGARMVWIATFVVLIAAARSLAN 469 >ref|NP_772227.1| hypothetical protein blr5587 [Bradyrhizobium japonicum USDA 110] dbj|BAC50852.1| blr5587 [Bradyrhizobium japonicum USDA 110] Length = 439 Score = 618 bits (1594), Expect = e-175, Method: Compositional matrix adjust. Identities = 307/421 (72%), Positives = 357/421 (84%) Query: 42 LLAPAFWNGYPLLQWDTGGYLARWYEGYLVPSRSTVFGIYLHVGETSDFWLNLGIQTLAT 101 ++APAFWNGYPLLQWDTGGYLARWYEGYLVPSRSTVFG+YLH GE+ FW+NL IQ+LAT Sbjct: 12 MIAPAFWNGYPLLQWDTGGYLARWYEGYLVPSRSTVFGLYLHSGESFGFWINLAIQSLAT 71 Query: 102 LWILQLTLRVLGLARPVRLIAISLALIATTALPWLASMLLTDIFAGLSVLALFILILHGE 161 LW+LQL+LRVLGL + R +AISL LI +TALPWLASMLLTDIF GLSVL+LF+L++ + Sbjct: 72 LWLLQLSLRVLGLLQTFRFVAISLLLILSTALPWLASMLLTDIFTGLSVLSLFLLVVGAQ 131 Query: 162 RISTLEKAVLFAFIAFSAATHSATLAVLLGLCCVGWMLRPWLGRRIPVAGLVQGSLTTVA 221 R S EK LF F AF+AATHSATL VLLGLC GWM RP++GRR+P+AGL Q S+T VA Sbjct: 132 RTSPHEKIALFVFTAFAAATHSATLGVLLGLCLAGWMARPFVGRRLPLAGLAQASMTIVA 191 Query: 222 GAAMLLAANFALSGQLAWTPGGYGVAFGRMLQDGIVAQYLHDHCATEKLKLCPYRDELPP 281 G ML+AAN ALSG+ AWTPGGYGVAFGRM+QDGIVA+YL+DHC E KLCPYR+ELP Sbjct: 192 GGLMLVAANHALSGKWAWTPGGYGVAFGRMMQDGIVARYLNDHCPRESFKLCPYRNELPA 251 Query: 282 TADDFLWGHSMFNTLGRFKGLNDEMGYIVLRSLAEYPEWQAKAALTATADQLMHVATGEG 341 TAD+FLWG S+FN LGRF+G+N+EM YIV+ SLA+YP WQA AA+ A QL+HVATGEG Sbjct: 252 TADEFLWGKSVFNALGRFEGMNEEMSYIVVHSLADYPAWQAGAAMRAVGQQLLHVATGEG 311 Query: 342 SNGWIPHTYGIIERYIPRQVAPMRAARQQRWHLDFTAINRIHVPVALGSMLLVVILFGRG 401 ++GWIPHTYGIIERYIP Q+APMRAARQQ+W ++F +N +HVPVAL SML +V L Sbjct: 312 TSGWIPHTYGIIERYIPAQIAPMRAARQQQWDVNFDYVNWLHVPVALASMLALVGLLAHA 371 Query: 402 LWQRRLDDLTLLAGTVTLALLGNAFVCGVISGPHDRYGARMVWVATFVVLIAAARAFARD 461 L +RRLDDLTLLA TVTLALLGNAF+C VISGPHDRYGARMVWVATFVVL+A ARAF + Sbjct: 372 LARRRLDDLTLLAATVTLALLGNAFICAVISGPHDRYGARMVWVATFVVLMALARAFGDE 431 Query: 462 E 462 E Sbjct: 432 E 432 >ref|YP_533006.1| hypothetical protein RPC_3145 [Rhodopseudomonas palustris BisB18] gb|ABD88687.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length = 465 Score = 602 bits (1553), Expect = e-170, Method: Compositional matrix adjust. Identities = 319/439 (72%), Positives = 369/439 (84%) Query: 24 RLTDARSVWIATIAIPLLLLAPAFWNGYPLLQWDTGGYLARWYEGYLVPSRSTVFGIYLH 83 R + S WI + +PLLLL PAFWN YPLLQ+DTGGYLARWYEGYLVPSRSTVFG+YLH Sbjct: 13 RRVEFASAWIVALVVPLLLLMPAFWNAYPLLQYDTGGYLARWYEGYLVPSRSTVFGLYLH 72 Query: 84 VGETSDFWLNLGIQTLATLWILQLTLRVLGLARPVRLIAISLALIATTALPWLASMLLTD 143 GE+S FW+NLG+Q LATLWILQLTLR+ G+ P+R++A+ LALI TTALPWL SMLLTD Sbjct: 73 FGESSYFWINLGVQALATLWILQLTLRLFGIRTPLRIVAVCLALILTTALPWLTSMLLTD 132 Query: 144 IFAGLSVLALFILILHGERISTLEKAVLFAFIAFSAATHSATLAVLLGLCCVGWMLRPWL 203 IFAGL+VL+LFI+++ G+ IS LE+ +L F AF+AATHSATL VLLGLCC + RP L Sbjct: 133 IFAGLAVLSLFIVVVQGDNISRLERGLLMLFTAFAAATHSATLGVLLGLCCAALLARPLL 192 Query: 204 GRRIPVAGLVQGSLTTVAGAAMLLAANFALSGQLAWTPGGYGVAFGRMLQDGIVAQYLHD 263 GRRIP+ GLV+G A AMLLAANFALSGQLAWTPGG GVAFGRMLQDGIVA+YL+D Sbjct: 193 GRRIPLGGLVRGLTALAASVAMLLAANFALSGQLAWTPGGVGVAFGRMLQDGIVARYLND 252 Query: 264 HCATEKLKLCPYRDELPPTADDFLWGHSMFNTLGRFKGLNDEMGYIVLRSLAEYPEWQAK 323 HCAT+ LKLCPYR LP TADDFLWG SMFNTLGRF+G++DEMG+I L +LA+YP WQA+ Sbjct: 253 HCATQALKLCPYRAALPATADDFLWGQSMFNTLGRFQGMDDEMGFIALHALADYPAWQAE 312 Query: 324 AALTATADQLMHVATGEGSNGWIPHTYGIIERYIPRQVAPMRAARQQRWHLDFTAINRIH 383 AAL ATA QL HVATGEG+NGWIPHTYGIIERY+P QVA MRAARQQ W +DF AINR+H Sbjct: 313 AALAATAQQLTHVATGEGTNGWIPHTYGIIERYLPGQVAAMRAARQQHWDIDFPAINRVH 372 Query: 384 VPVALGSMLLVVILFGRGLWQRRLDDLTLLAGTVTLALLGNAFVCGVISGPHDRYGARMV 443 VPVALGSMLL+ ++ G LW+R LDDL+LL+ TV LAL+GNA +CGVISGPHDRYGARMV Sbjct: 373 VPVALGSMLLLTVILGNALWRRNLDDLSLLSATVCLALIGNAAICGVISGPHDRYGARMV 432 Query: 444 WVATFVVLIAAARAFARDE 462 W+A+FVVLIAA R F D Sbjct: 433 WLASFVVLIAANRWFDHDS 451