BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0010.p (399 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001204981.1| putative signal peptide [Bradyrhizobium sp. ... 308 8e-82 ref|NP_772229.1| hypothetical protein bll5589 [Bradyrhizobium ja... 303 2e-80 ref|YP_001241130.1| hypothetical protein BBta_5235 [Bradyrhizobi... 302 5e-80 ref|ZP_08630490.1| hypothetical protein CSIRO_3599 [Bradyrhizobi... 297 2e-78 ref|YP_577824.1| hypothetical protein Nham_2582 [Nitrobacter ham... 284 2e-74 >ref|YP_001204981.1| putative signal peptide [Bradyrhizobium sp. ORS 278] emb|CAL76744.1| conserved hypothetical protein; putative signal peptide [Bradyrhizobium sp. ORS 278] Length = 380 Score = 308 bits (790), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 205/321 (63%), Positives = 237/321 (73%), Gaps = 4/321 (1%) Query: 2 RVSLAVVGVAASAAVGAAIWPHARDAGTVLAARDDPAALADIRLNSVLRNNPALISDNIE 61 R+SLAVVG+AASAAVGAA WPHA AGTV+AA DDPA L++++++++LR +PALI+ NI+ Sbjct: 6 RLSLAVVGLAASAAVGAAWWPHAFRAGTVIAAADDPARLSELQVSALLRTDPALIARNID 65 Query: 62 AALASGDADLAMSFVELAGEKNIALSDDLTKRVDDARAEQSSSMHFAKGFATGLVTGNAD 121 ALA+GD DLA SFV LA E I L L +RV DA A + + AK FATGLVTG AD Sbjct: 66 EALAAGDPDLAESFVALASEHRITLDPALVERVSDAAAAEKAPSSVAKRFATGLVTGQAD 125 Query: 122 DVASLSGTVAGDLFVFGDVRDVVREGKHLVMGEDTDQLVLGLAAAGLAVTAATYVSVGGA 181 DVASLSGTVAGDLFVFGD+RD VREGKHL MGE+TD+LVLGLAAAGLAVTAATYVS GGA Sbjct: 126 DVASLSGTVAGDLFVFGDIRDAVREGKHLAMGEETDRLVLGLAAAGLAVTAATYVSAGGA 185 Query: 182 GPLRAGLTLVKDTRKAGRLSEGMIEWAGRSAREVVDQPALREAVASGSVLRPVEAATAIR 241 P+RAGLTLVKD RK GRL EG+ WAGRSAREVVD P L++AVA+GSVLRP E ATAIR Sbjct: 186 APVRAGLTLVKDARKVGRLGEGLAAWAGRSAREVVDAPMLQQAVAAGSVLRPGETATAIR 245 Query: 242 AAFRAEKAGAPVPVPKTRAHWQGGRGSR-CPDTLKAAKTPMRRAGGAH-ARVKGGKP--W 297 AAFRAEKAGA V + K G+R D+LK A+ P A A A KGG+ Sbjct: 246 AAFRAEKAGALVRLGKDVGRITEKAGTRGALDSLKLAEGPKDVARAARLAEAKGGQTRAL 305 Query: 298 RPETGRRGALLRAAAHSSYLW 318 GR LL A A + LW Sbjct: 306 LKLLGRGALLLTAGAFNLALW 326 >ref|NP_772229.1| hypothetical protein bll5589 [Bradyrhizobium japonicum USDA 110] dbj|BAC50854.1| bll5589 [Bradyrhizobium japonicum USDA 110] Length = 378 Score = 303 bits (777), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 200/324 (61%), Positives = 240/324 (74%), Gaps = 8/324 (2%) Query: 1 VRVSLAVVGVAASAAVGAAIWPHARDAGTVLAARDDPAALADIRLNSVLRNNPALISDNI 60 +R+S A+ G+AA + + A + PHAR+AG +LAA+DDPAAL++++L++VLR N L+ DNI Sbjct: 4 LRISTALTGIAACSFMLAQVAPHAREAGAILAAQDDPAALSELKLDAVLRQNDRLVQDNI 63 Query: 61 EAALASGDADLAMSFVELAGEKNIALSDDLTKRVDDARAEQSSSMHFAKGFATGLVTGNA 120 EAALA+GDADLA SFV LA ++NIA+ DDL RV DA E++S+ HFA+ FATGLVTG+ Sbjct: 64 EAALAAGDADLADSFVALARDRNIAVPDDLLARVSDAVKEENSTSHFARRFATGLVTGSG 123 Query: 121 DDVASLSGTVAGDLFVFGDVRDVVREGKHLVMGEDTDQLVLGLAAAGLAVTAATYVSVGG 180 DDVASLSGTV GDLFV GDVRDVVREGKHL MGEDTD+LVLGLAAAGLAVTAATYVS+GG Sbjct: 124 DDVASLSGTVVGDLFVIGDVRDVVREGKHLAMGEDTDRLVLGLAAAGLAVTAATYVSIGG 183 Query: 181 AGPLRAGLTLVKDTRKAGRLSEGMIEWAGRSAREVVDQPALREAVASGSVLRPVEAATAI 240 A P+RAGLTLVKD RK GRL EG+ WAGRSARE VD P L+ AVASGSVLRP + +AI Sbjct: 184 AAPVRAGLTLVKDARKVGRLGEGLAAWAGRSAREFVDTPVLQNAVASGSVLRPGQTVSAI 243 Query: 241 RAAFRAEKAGAPVPVPK--TR-AHWQGGRGSRCPDTLKAAKTPM---RRAGGAHARVKGG 294 +AAFRAEKAGA V + K TR A G RG+ D+L A+ P R A A A+ Sbjct: 244 KAAFRAEKAGALVRLGKDVTRVAEKTGTRGAM--DSLHIAEGPKDVARAARLAEAQGSKT 301 Query: 295 KPWRPETGRRGALLRAAAHSSYLW 318 + GR LL A LW Sbjct: 302 RAIMKLLGRGALLLVGGAFDLALW 325 >ref|YP_001241130.1| hypothetical protein BBta_5235 [Bradyrhizobium sp. BTAi1] gb|ABQ37224.1| putative exported protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 383 Score = 302 bits (774), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 193/320 (60%), Positives = 228/320 (71%), Gaps = 4/320 (1%) Query: 3 VSLAVVGVAASAAVGAAIWPHARDAGTVLAARDDPAALADIRLNSVLRNNPALISDNIEA 62 + LAV G+A S A+GAA++PHA AG VL A DDPA L+++++ +L+++P IS IE Sbjct: 10 IGLAVAGLAISIAIGAALYPHAYHAGAVLDAADDPARLSELQIAPLLQSDPTRISTGIEE 69 Query: 63 ALASGDADLAMSFVELAGEKNIALSDDLTKRVDDARAEQSSSMHFAKGFATGLVTGNADD 122 ALA+GD DLA SFV LA ++AL + +RV +A A + + AK FATGLVTG ADD Sbjct: 70 ALAAGDPDLADSFVALANAHHLALDESQVQRVTEALAAEKAPASVAKRFATGLVTGQADD 129 Query: 123 VASLSGTVAGDLFVFGDVRDVVREGKHLVMGEDTDQLVLGLAAAGLAVTAATYVSVGGAG 182 VASLSGTVAGDLFVFGD+RD VREGKHLVMGE+TD+LVLGLAAAGLAVTAATYVS G A Sbjct: 130 VASLSGTVAGDLFVFGDIRDAVREGKHLVMGEETDRLVLGLAAAGLAVTAATYVSAGTAA 189 Query: 183 PLRAGLTLVKDTRKAGRLSEGMIEWAGRSAREVVDQPALREAVASGSVLRPVEAATAIRA 242 P+RAGLTLVKD RK GRL EG+ WAGRSAREVVD P L++AVASGSVLRP E ATAIRA Sbjct: 190 PVRAGLTLVKDARKVGRLGEGLAAWAGRSAREVVDAPMLQQAVASGSVLRPGETATAIRA 249 Query: 243 AFRAEKAGAPVPVPKTRAHWQGGRGSR-CPDTLKAAKTPMRRAGGAH-ARVKGGKP--WR 298 AFRAEKAGA V + K G+R D+LK A+ P A A A KGG+ Sbjct: 250 AFRAEKAGALVRLGKDVGRITEKAGTRGALDSLKLAEGPKDVARAARLAEAKGGQTRAIL 309 Query: 299 PETGRRGALLRAAAHSSYLW 318 GR LL A A + LW Sbjct: 310 KLLGRGALLLTAGAFNLALW 329 >ref|ZP_08630490.1| hypothetical protein CSIRO_3599 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06869.1| hypothetical protein CSIRO_3599 [Bradyrhizobiaceae bacterium SG-6C] Length = 372 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 182/321 (56%), Positives = 226/321 (70%), Gaps = 3/321 (0%) Query: 1 VRVSLAVVGVAASAAVGAAIWPHARDAGTVLAARDDPAALADIRLNSVLRNNPALISDNI 60 +R+ L + G ASAAV AA+WPHAR+AG++L A+DDPAAL+D R+NS LR NPA + Sbjct: 5 LRIGLTLAGAVASAAVFAALWPHAREAGSLLLAQDDPAALSDGRINSALRTNPATLGQGA 64 Query: 61 EAALASGDADLAMSFVELAGEKNIALSDDLTKRVDDARAEQSSSMHFAKGFATGLVTGNA 120 E AL +GDADLA SF +LA +K IAL + ++ RVD A A+++S++ AK FATGLVTG A Sbjct: 65 EQALQAGDADLANSFADLARDKGIALPEGISARVDAAVADENSTVSVAKRFATGLVTGEA 124 Query: 121 DDVASLSGTVAGDLFVFGDVRDVVREGKHLVMGEDTDQLVLGLAAAGLAVTAATYVSVGG 180 DDVASLSGTVAGDLFVFGD+RDVVREGK L MGED D+LVLG+A+ GL VTAATYVS GG Sbjct: 125 DDVASLSGTVAGDLFVFGDIRDVVREGKRLAMGEDADRLVLGIASVGLVVTAATYVSAGG 184 Query: 181 AGPLRAGLTLVKDTRKAGRLSEGMIEWAGRSAREVVDQPALREAVASGSVLRPVEAATAI 240 A P+RAGLT+VKD RK GRL G+ EWAGRSAR VVD P L++AVA S+ P + TA+ Sbjct: 185 ATPVRAGLTMVKDARKVGRLGAGLTEWAGRSARGVVDAPMLQKAVADASLAHPRQTITAM 244 Query: 241 RAAFRAEKAGAPVPVPKTRAHWQGGRGSR-CPDTLKAAKTPMRRAGGAH-ARVKGGKPWR 298 +AAF+A+KAGA V + K G++ D L+ A P A A A KGG+ Sbjct: 245 KAAFKADKAGALVRLAKDVGRVGEKAGTKGALDVLRIADGPKDVARAARLAESKGGQTRA 304 Query: 299 -PETGRRGALLRAAAHSSYLW 318 + RGALL A + W Sbjct: 305 IIKILGRGALLLTAGAFNLAW 325 >ref|YP_577824.1| hypothetical protein Nham_2582 [Nitrobacter hamburgensis X14] gb|ABE63364.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 367 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 176/321 (54%), Positives = 222/321 (69%), Gaps = 4/321 (1%) Query: 2 RVSLAVVGVAASAAVGAAIWPHARDAGTVLAARDDPAALADIRLNSVLRNNPALISDNIE 61 R+ A+ G A A A +WPHA+DAG VL +DDPA L+D++L+S+LRN+PAL+ NI+ Sbjct: 4 RIGSAMTGAAICATAFALLWPHAKDAGAVLMVQDDPARLSDLQLDSILRNDPALVEQNIK 63 Query: 62 AALASGDADLAMSFVELAGEKNIALSDDLTKRVDDARAEQSSSMHFAKGFATGLVTGNAD 121 AALA+ D +LA SFV+LA + I + +L++RV +A E++S+ H A F GLVTGNAD Sbjct: 64 AALAAQDTNLANSFVDLAAARGIPIPGELSQRVAEAVREENSTGHMAGRFLAGLVTGNAD 123 Query: 122 DVASLSGTVAGDLFVFGDVRDVVREGKHLVMGEDTDQLVLGLAAAGLAVTAATYVSVGGA 181 D ASLSGTVAGDL VFGDVRD++REGKHL MGEDTD+L+LGLAA GL VTAAT+VSVGGA Sbjct: 124 DGASLSGTVAGDLCVFGDVRDIMREGKHLAMGEDTDRLLLGLAATGLVVTAATFVSVGGA 183 Query: 182 GPLRAGLTLVKDTRKAGRLSEGMIEWAGRSAREVVDQPALREAVASGSVLRPVEAATAIR 241 P RAGLTLVKD RK GRL EG+ WAGRSARE+VD L++AVA+ ++ RP + A AI+ Sbjct: 184 APARAGLTLVKDARKVGRLGEGLSRWAGRSAREMVDTRKLQDAVATAALARPRQTAGAIK 243 Query: 242 AAFRAEKAGAPVPVPKTRAHWQGGRGSR-CPDTLKAAKTPMRRAGGAH-ARVKGGKP--W 297 AA RAEKAG V + K G+R DTL+ A+ P A A A KGG+ Sbjct: 244 AAIRAEKAGGLVRLAKDVGRIGEKAGTRGALDTLRIAQGPKDVARAARLAGAKGGQTRAI 303 Query: 298 RPETGRRGALLRAAAHSSYLW 318 GR LL A + +W Sbjct: 304 IKILGRGALLLTTGAFNLAMW 324