BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0007.p         (144 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_772232.1| hypothetical protein bll5592 [Bradyrhizobium ja...   127   5e-28
ref|YP_001204978.1| putative signal peptide [Bradyrhizobium sp. ...   120   5e-26
ref|YP_004108286.1| hypothetical protein Rpdx1_1942 [Rhodopseudo...   119   1e-25
ref|YP_001241133.1| hypothetical protein BBta_5238 [Bradyrhizobi...   113   7e-24
ref|YP_001992893.1| hypothetical protein Rpal_3921 [Rhodopseudom...   111   3e-23

>ref|NP_772232.1| hypothetical protein bll5592 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50857.1| bll5592 [Bradyrhizobium japonicum USDA 110]
          Length = 138

 Score =  127 bits (320), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 58/107 (54%), Positives = 79/107 (73%), Gaps = 1/107 (0%)

Query: 10  KLSRAAAVIALLASAAGVSGCAQIGDTVPSAFADPAKYELYDCKQLENERSNLKTRAADQ 69
           +L    A+  LLA  A +SGCA + +TV  AFADPA+Y+LYDCKQLE+ER  L +R AD 
Sbjct: 8   RLRFCGALFVLLAGGA-LSGCASMSETVAPAFADPARYDLYDCKQLESERKGLASRTADL 66

Query: 70  EKLMAKAETGVGGTVVSEMVYRNELISIHSQQKLADEAWRKGRCHES 116
           ++LM KA+TG GG VV+E+ YRNE +++  Q +LA+EAWR+ RC E+
Sbjct: 67  QRLMDKAQTGAGGAVVAELAYRNEYVAVRGQAQLAEEAWRRNRCRET 113


>ref|YP_001204978.1| putative signal peptide [Bradyrhizobium sp. ORS 278]
 emb|CAL76741.1| conserved hypothetical protein; putative signal peptide
           [Bradyrhizobium sp. ORS 278]
          Length = 154

 Score =  120 bits (302), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 59/103 (57%), Positives = 75/103 (72%), Gaps = 3/103 (2%)

Query: 29  GCAQIGDTVPSAFADPAKYELYDCKQLENERSNLKTRAADQEKLMAKAETGVGGTVVSEM 88
           GCA + D+V +AFADPAKY+LYDCKQLE ER  L  R A+ + LMAKAETG GG VV+E+
Sbjct: 28  GCAGMSDSVSTAFADPAKYDLYDCKQLEAERKALAARTAELQGLMAKAETGAGGAVVAEV 87

Query: 89  VYRNELISIHSQQKLADEAWRKGRCHESTPDTPAAA--APAAP 129
            YRN+ +++  Q + A+EAWR+ +C E TP TP AA   PA P
Sbjct: 88  AYRNDYVAVRGQSQFAEEAWRRNKCVE-TPPTPVAAKGKPAKP 129


>ref|YP_004108286.1| hypothetical protein Rpdx1_1942 [Rhodopseudomonas palustris DX-1]
 gb|ADU43553.1| hypothetical protein Rpdx1_1942 [Rhodopseudomonas palustris DX-1]
          Length = 134

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/113 (55%), Positives = 79/113 (69%), Gaps = 3/113 (2%)

Query: 26  GVSGCAQIGDTVPS-AFADPAKYELYDCKQLENERSNLKTRAADQEKLMAKAETGVGGTV 84
           G+SGCA IGD+  S AF DPA+Y LYDCKQLE ER  L  + A  + LM KA+TGV G V
Sbjct: 24  GLSGCAGIGDSALSQAFVDPARYALYDCKQLEVERKGLDAQLARLDGLMRKAQTGVAGPV 83

Query: 85  VSEMVYRNELISIHSQQKLADEAWRKGRCHESTPDTPAAAAPAAPTPAAKGPR 137
           VSEM YRN+ I++ +  +LA++ WR+ RC E TP+ P AAAPA P  A +G R
Sbjct: 84  VSEMAYRNDYINLKALSRLAEQTWRENRCTE-TPEQP-AAAPAEPKRAGRGTR 134


>ref|YP_001241133.1| hypothetical protein BBta_5238 [Bradyrhizobium sp. BTAi1]
 gb|ABQ37227.1| putative exported protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 125

 Score =  113 bits (283), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 48/84 (57%), Positives = 64/84 (76%)

Query: 33  IGDTVPSAFADPAKYELYDCKQLENERSNLKTRAADQEKLMAKAETGVGGTVVSEMVYRN 92
           + D + +AFADPAKY+LYDCKQLE ER +L  R A+ + LMAKAETG GG VV+E+ YRN
Sbjct: 1   MSDNMSTAFADPAKYDLYDCKQLETERKSLAARTAELQGLMAKAETGTGGVVVAELAYRN 60

Query: 93  ELISIHSQQKLADEAWRKGRCHES 116
           + ++I  Q + A+EAWR+ +C ES
Sbjct: 61  DYVAIRGQSQFAEEAWRRNKCQES 84


>ref|YP_001992893.1| hypothetical protein Rpal_3921 [Rhodopseudomonas palustris TIE-1]
 gb|ACF02418.1| conserved hypothetical protein; putative signal peptide
           [Rhodopseudomonas palustris TIE-1]
          Length = 134

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 67/89 (75%), Gaps = 1/89 (1%)

Query: 26  GVSGCAQIGDTVPS-AFADPAKYELYDCKQLENERSNLKTRAADQEKLMAKAETGVGGTV 84
           G+SGCA +GD+  S AF DPAKYELYDCKQLE ER +L  R A  + LM KA+TGV G V
Sbjct: 24  GLSGCAGMGDSALSQAFVDPAKYELYDCKQLEAERKSLDERLAKLDGLMRKAQTGVAGPV 83

Query: 85  VSEMVYRNELISIHSQQKLADEAWRKGRC 113
           VSE+ YRN+ I++ +Q +LA++ WR+ RC
Sbjct: 84  VSEIAYRNDYINVKAQSRLAEQTWRENRC 112