BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0004.p (539 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772236.1| ABC transporter substrate-binding protein [Brad... 925 0.0 ref|YP_001241147.1| putative ABC transporter substrate-binding p... 921 0.0 ref|YP_001204967.1| putative ABC transporter substrate-binding p... 913 0.0 ref|YP_001241146.1| putative ABC transporter substrate-binding p... 906 0.0 ref|YP_001204968.1| putative ABC transporter substrate-binding p... 882 0.0 >ref|NP_772236.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC50861.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] Length = 536 Score = 925 bits (2391), Expect = 0.0, Method: Compositional matrix adjust. Identities = 445/539 (82%), Positives = 480/539 (89%), Gaps = 3/539 (0%) Query: 1 MFPISRWKHRTLAAALTALALSFAPQELSFAPQAMAAGKTITAVMHSDLRVIDPIMTTAY 60 MF R R A + LALS + A +AAGKT+TAVMHSDLR+IDPI TTAY Sbjct: 1 MFHFMRRAPRAFA---SKLALSVVALSTALASPVLAAGKTLTAVMHSDLRIIDPIFTTAY 57 Query: 61 ITRDHGYMIYDTLLATDSNFKIQPQMADWKVSDDKLTYTFTLRDGLKWHDGAPVTAEDCV 120 ITRDHGYM+YDTL+ATDSNFKIQPQMADWK+SDDKLTYTFTLRDGLKWHDG PVTAEDCV Sbjct: 58 ITRDHGYMVYDTLVATDSNFKIQPQMADWKISDDKLTYTFTLRDGLKWHDGTPVTAEDCV 117 Query: 121 ASLQRWGKVDGMGQKLMDFVASLEATDAKTITLKLKEPYGLVLESIGKPSSRVPFMMPKR 180 ASL+RWG VDGMGQKLMDF ASLEATDAKTITLKLKEPYGLVL+SIGKPSSRV FMMPKR Sbjct: 118 ASLKRWGAVDGMGQKLMDFTASLEATDAKTITLKLKEPYGLVLDSIGKPSSRVAFMMPKR 177 Query: 181 LAETPPDKPIPEQIGSGPFKFVQAEFQPGVKAVYEKNKDYVPRKEPASWTAGGKVVKVDR 240 LAETPPDK IPEQIGSGPFKFVQ+EFQPGVKAVY KN DYVPRKEPASWT+GGKVVKVDR Sbjct: 178 LAETPPDKQIPEQIGSGPFKFVQSEFQPGVKAVYVKNTDYVPRKEPASWTSGGKVVKVDR 237 Query: 241 VEWVTMADAQTAVNALQSGDIDFMENLPFDMLPVLEANPDLKIDVLNKFGFQTLGRMNFL 300 VEW+TM D+QTAVNALQSGDIDF+ENLP+DMLPVLEAN ++ I+V NKFGFQTLGRMNFL Sbjct: 238 VEWITMPDSQTAVNALQSGDIDFVENLPYDMLPVLEANKEITIEVSNKFGFQTLGRMNFL 297 Query: 301 YPPFDNPKVRRAAFLAMNQKDVLDALVGNAKYQRICGAFFVCGTPLETDVGAETLVKGNG 360 YPPFDN KVRRAAFLAMNQKDVLDALVGNAKYQ++CGAFFVC TPL TDVGAETLVKGNG Sbjct: 298 YPPFDNVKVRRAAFLAMNQKDVLDALVGNAKYQKVCGAFFVCDTPLATDVGAETLVKGNG 357 Query: 361 LAEAKKALAASGYDGTPVVIMIPGDVQTLKGPPTVAAQLLRAAGFNVDAQVTDWQTVVSR 420 +AEAKKALA SGYDGTPVV+M PGDV TLK P VAAQLLR AGF VD Q TDWQTVVSR Sbjct: 358 MAEAKKALAESGYDGTPVVVMAPGDVTTLKAQPIVAAQLLREAGFKVDLQATDWQTVVSR 417 Query: 421 RASQKPPKEGGWNMFFTNWVAADVSDPIVNASITGRGKNGGWFGWAEDAKIEELRDKFAR 480 RASQKPPKEGGWNMFFTNWVAADVS+PI N SI G+GK GGWFGWAED KIE+L+D F R Sbjct: 418 RASQKPPKEGGWNMFFTNWVAADVSNPIANLSIGGQGKKGGWFGWAEDPKIEQLKDAFVR 477 Query: 481 AGSAEEKKKIAAEIQTEAYDQVIYVPLGQYTIPSAWRKSLTGVLDGPATPIFWNIDKSE 539 A S +E+KKIAA+IQ EAY+QVIYVPLGQY +PS WRKSL+GVLDGPATP+FWN+DKSE Sbjct: 478 APSVDEQKKIAADIQKEAYEQVIYVPLGQYLLPSGWRKSLSGVLDGPATPLFWNVDKSE 536 >ref|YP_001241147.1| putative ABC transporter substrate-binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ37241.1| putative ABC transporter (substrate-binding protein) [Bradyrhizobium sp. BTAi1] Length = 537 Score = 921 bits (2381), Expect = 0.0, Method: Compositional matrix adjust. Identities = 447/540 (82%), Positives = 480/540 (88%), Gaps = 4/540 (0%) Query: 1 MFPISRWKHRTLAAALTALALSFAPQELSFAPQAMAAGK-TITAVMHSDLRVIDPIMTTA 59 MF I RWK TLA T+LA+S + + QA+AA K TITAVMHSDLRVIDP TTA Sbjct: 1 MFHIPRWKGLTLA---TSLAVSVLSLSTALSTQALAAAKKTITAVMHSDLRVIDPGFTTA 57 Query: 60 YITRDHGYMIYDTLLATDSNFKIQPQMADWKVSDDKLTYTFTLRDGLKWHDGAPVTAEDC 119 YITRDHGYM+YDTLLA DSNFKIQPQMADWKVSDDKLTYTFTLRDGLKWHDG PVTAEDC Sbjct: 58 YITRDHGYMVYDTLLAVDSNFKIQPQMADWKVSDDKLTYTFTLRDGLKWHDGTPVTAEDC 117 Query: 120 VASLQRWGKVDGMGQKLMDFVASLEATDAKTITLKLKEPYGLVLESIGKPSSRVPFMMPK 179 VASL+RWG+ DGMGQKLMDF ASLEA DAKTI LKLKEPYGLVLESIGKPSS VPFMMPK Sbjct: 118 VASLKRWGRNDGMGQKLMDFTASLEAPDAKTIVLKLKEPYGLVLESIGKPSSLVPFMMPK 177 Query: 180 RLAETPPDKPIPEQIGSGPFKFVQAEFQPGVKAVYEKNKDYVPRKEPASWTAGGKVVKVD 239 RLAETP + IPEQIGSGPFKFV+AEFQPGVKAVYEKN DYVPRKEPASWT+GGKVVKVD Sbjct: 178 RLAETPQGQQIPEQIGSGPFKFVKAEFQPGVKAVYEKNTDYVPRKEPASWTSGGKVVKVD 237 Query: 240 RVEWVTMADAQTAVNALQSGDIDFMENLPFDMLPVLEANPDLKIDVLNKFGFQTLGRMNF 299 RVEW+TM DAQTAVNALQSGDIDFMENLP+DM+PVLEANPDLKIDVLNKFG+QTLGRMNF Sbjct: 238 RVEWITMPDAQTAVNALQSGDIDFMENLPYDMMPVLEANPDLKIDVLNKFGYQTLGRMNF 297 Query: 300 LYPPFDNPKVRRAAFLAMNQKDVLDALVGNAKYQRICGAFFVCGTPLETDVGAETLVKGN 359 L PPFDN KVRRAAFLA+NQKDVLDALVGNAKYQ+ICGA FVCGTPLETDVGAETL+KGN Sbjct: 298 LNPPFDNVKVRRAAFLALNQKDVLDALVGNAKYQKICGAVFVCGTPLETDVGAETLIKGN 357 Query: 360 GLAEAKKALAASGYDGTPVVIMIPGDVQTLKGPPTVAAQLLRAAGFNVDAQVTDWQTVVS 419 G+AEAKKALA SGYDGTP+ IM PGDV TLK P VAAQLLR AGF VD Q TDWQTVV+ Sbjct: 358 GMAEAKKALAESGYDGTPIAIMAPGDVTTLKAQPIVAAQLLREAGFKVDLQATDWQTVVT 417 Query: 420 RRASQKPPKEGGWNMFFTNWVAADVSDPIVNASITGRGKNGGWFGWAEDAKIEELRDKFA 479 RRASQKP KEGGWNMFFTNWV ADV++P+VN SI GRG GGWFGWAEDA+IE+LRD +A Sbjct: 418 RRASQKPVKEGGWNMFFTNWVGADVANPVVNVSIGGRGTKGGWFGWAEDAEIEKLRDAYA 477 Query: 480 RAGSAEEKKKIAAEIQTEAYDQVIYVPLGQYTIPSAWRKSLTGVLDGPATPIFWNIDKSE 539 RA S +E+KKIA EIQ Y++VIY+PLGQY +PS WRKSLTGVLDGPATPIFWNIDKSE Sbjct: 478 RASSPDEQKKIATEIQKLNYERVIYIPLGQYLLPSGWRKSLTGVLDGPATPIFWNIDKSE 537 >ref|YP_001204967.1| putative ABC transporter substrate-binding protein [Bradyrhizobium sp. ORS 278] emb|CAL76730.1| putative ABC transporter (substrate-binding protein); putative exported protein [Bradyrhizobium sp. ORS 278] Length = 535 Score = 913 bits (2359), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/540 (81%), Positives = 480/540 (88%), Gaps = 6/540 (1%) Query: 1 MFPISRWKHRTLAAALTALALSFAPQELSFAPQAMAAGKT-ITAVMHSDLRVIDPIMTTA 59 MF ISR K LA A+ L+LS A + +A+AAGKT ITAVMHSDLRVIDP TTA Sbjct: 1 MFHISRRKGLALATAVAMLSLSTA-----VSTRALAAGKTTITAVMHSDLRVIDPGFTTA 55 Query: 60 YITRDHGYMIYDTLLATDSNFKIQPQMADWKVSDDKLTYTFTLRDGLKWHDGAPVTAEDC 119 YITRDHGYM+YDTLLATDSNFK+QPQMADWKVSDDKLTYTFTLRDGLKWHDGAPVTAEDC Sbjct: 56 YITRDHGYMVYDTLLATDSNFKVQPQMADWKVSDDKLTYTFTLRDGLKWHDGAPVTAEDC 115 Query: 120 VASLQRWGKVDGMGQKLMDFVASLEATDAKTITLKLKEPYGLVLESIGKPSSRVPFMMPK 179 VASL+RWG+ DGMGQKLMDF ASLEA DAKTI LKLKEPYGLVLESI KPSS VPFMMPK Sbjct: 116 VASLKRWGRNDGMGQKLMDFTASLEAPDAKTIVLKLKEPYGLVLESIAKPSSLVPFMMPK 175 Query: 180 RLAETPPDKPIPEQIGSGPFKFVQAEFQPGVKAVYEKNKDYVPRKEPASWTAGGKVVKVD 239 RLAETP + IPEQIGSGPFKFV+AEFQPGVKAVYEKN DYVPRKEPASWT+GGKVVKVD Sbjct: 176 RLAETPQGQQIPEQIGSGPFKFVKAEFQPGVKAVYEKNADYVPRKEPASWTSGGKVVKVD 235 Query: 240 RVEWVTMADAQTAVNALQSGDIDFMENLPFDMLPVLEANPDLKIDVLNKFGFQTLGRMNF 299 RVEW+TM DAQTAVNALQSGDIDFMENLP+DMLPVLEA+PDLKIDVLNKFG+QTLGRMNF Sbjct: 236 RVEWITMPDAQTAVNALQSGDIDFMENLPYDMLPVLEASPDLKIDVLNKFGYQTLGRMNF 295 Query: 300 LYPPFDNPKVRRAAFLAMNQKDVLDALVGNAKYQRICGAFFVCGTPLETDVGAETLVKGN 359 L+PPFDN KVRRAAFLA+NQKDVLDALVGNAKYQ++CGA FVCGTPLETDVGAETL+KGN Sbjct: 296 LHPPFDNVKVRRAAFLALNQKDVLDALVGNAKYQKVCGAVFVCGTPLETDVGAETLIKGN 355 Query: 360 GLAEAKKALAASGYDGTPVVIMIPGDVQTLKGPPTVAAQLLRAAGFNVDAQVTDWQTVVS 419 G+AEAKK LA SGYDGTP+ IM PGDV TLK P VAAQLLR AGF VD Q TDWQTVV+ Sbjct: 356 GMAEAKKVLAESGYDGTPIAIMAPGDVTTLKAQPVVAAQLLREAGFKVDLQATDWQTVVT 415 Query: 420 RRASQKPPKEGGWNMFFTNWVAADVSDPIVNASITGRGKNGGWFGWAEDAKIEELRDKFA 479 RRASQKP KEGGWNMFFTNWV ADV++P+ N S+ GRG GGWFGWAEDA++E+LRD +A Sbjct: 416 RRASQKPIKEGGWNMFFTNWVGADVANPVANVSVGGRGTKGGWFGWAEDAEVEKLRDAYA 475 Query: 480 RAGSAEEKKKIAAEIQTEAYDQVIYVPLGQYTIPSAWRKSLTGVLDGPATPIFWNIDKSE 539 R+ S +E+KKIA EIQ Y++V+Y+PLGQY +PS WRKSLTGVLDGPATP+FWNIDKSE Sbjct: 476 RSSSPDEQKKIATEIQKLNYEKVLYIPLGQYLLPSGWRKSLTGVLDGPATPVFWNIDKSE 535 >ref|YP_001241146.1| putative ABC transporter substrate-binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ37240.1| putative ABC transporter (substrate-binding protein) [Bradyrhizobium sp. BTAi1] Length = 537 Score = 906 bits (2341), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/540 (81%), Positives = 476/540 (88%), Gaps = 4/540 (0%) Query: 1 MFPISRWKHRTLAAALTALALSFAPQELSFAPQAMAAGKT-ITAVMHSDLRVIDPIMTTA 59 M P R H LA+ L A A+ +P APQA+AAGKT I AVMHSDLRVIDP TTA Sbjct: 1 MSPHPRRAHSVLASWLVASAVLLSP---CLAPQALAAGKTTIAAVMHSDLRVIDPGFTTA 57 Query: 60 YITRDHGYMIYDTLLATDSNFKIQPQMADWKVSDDKLTYTFTLRDGLKWHDGAPVTAEDC 119 YITRDHGYM+YDTLLATD+NFKIQPQMADWKVSDDKLTYTFTLRDGLKWHDG PVTAEDC Sbjct: 58 YITRDHGYMVYDTLLATDANFKIQPQMADWKVSDDKLTYTFTLRDGLKWHDGTPVTAEDC 117 Query: 120 VASLQRWGKVDGMGQKLMDFVASLEATDAKTITLKLKEPYGLVLESIGKPSSRVPFMMPK 179 VASL+RWG+ DGMGQKLMDF ASLEA DAKTI LKLKEPYGLVLESIGKPSS VPFMMPK Sbjct: 118 VASLKRWGRNDGMGQKLMDFTASLEAPDAKTIVLKLKEPYGLVLESIGKPSSLVPFMMPK 177 Query: 180 RLAETPPDKPIPEQIGSGPFKFVQAEFQPGVKAVYEKNKDYVPRKEPASWTAGGKVVKVD 239 RLAETP + IPEQIGSGPFKFV+AEFQPGVKAVYEKN DYVPRKEPASWT+GGKVVKVD Sbjct: 178 RLAETPQGQQIPEQIGSGPFKFVKAEFQPGVKAVYEKNTDYVPRKEPASWTSGGKVVKVD 237 Query: 240 RVEWVTMADAQTAVNALQSGDIDFMENLPFDMLPVLEANPDLKIDVLNKFGFQTLGRMNF 299 RVEW+TMADAQTAVNALQSGDIDFME P+D+LPVLEANPDLKIDVLNKFGFQTLGRMNF Sbjct: 238 RVEWITMADAQTAVNALQSGDIDFMEAPPYDLLPVLEANPDLKIDVLNKFGFQTLGRMNF 297 Query: 300 LYPPFDNPKVRRAAFLAMNQKDVLDALVGNAKYQRICGAFFVCGTPLETDVGAETLVKGN 359 L PPFDN KVRRAAFLA+NQKDVLDALVGNAKYQ+ICGA FVCGTPLETDVGAETL+KGN Sbjct: 298 LNPPFDNVKVRRAAFLALNQKDVLDALVGNAKYQKICGAVFVCGTPLETDVGAETLIKGN 357 Query: 360 GLAEAKKALAASGYDGTPVVIMIPGDVQTLKGPPTVAAQLLRAAGFNVDAQVTDWQTVVS 419 G+AEAKKALA SGYDGTP+ IM PGDV LK P VAAQLLR AGF VD Q TDWQTVV+ Sbjct: 358 GMAEAKKALAESGYDGTPIAIMAPGDVGALKPQPIVAAQLLREAGFKVDLQATDWQTVVT 417 Query: 420 RRASQKPPKEGGWNMFFTNWVAADVSDPIVNASITGRGKNGGWFGWAEDAKIEELRDKFA 479 RRASQKP K+GGWNMFFTNWV ADV++P+VN S+ GRG GGWFGWAEDA+IE+LRD +A Sbjct: 418 RRASQKPVKDGGWNMFFTNWVGADVANPVVNVSVGGRGTKGGWFGWAEDAEIEKLRDAYA 477 Query: 480 RAGSAEEKKKIAAEIQTEAYDQVIYVPLGQYTIPSAWRKSLTGVLDGPATPIFWNIDKSE 539 RA S +E+KKIAAEIQ Y++VIY+PLGQY PS WRKSLTGVLDGPATP+FWNIDK E Sbjct: 478 RASSPDEQKKIAAEIQKLNYERVIYIPLGQYLQPSVWRKSLTGVLDGPATPVFWNIDKKE 537 >ref|YP_001204968.1| putative ABC transporter substrate-binding protein [Bradyrhizobium sp. ORS 278] emb|CAL76731.1| putative ABC transporter (substrate-binding protein) [Bradyrhizobium sp. ORS 278] Length = 537 Score = 882 bits (2278), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/540 (79%), Positives = 467/540 (86%), Gaps = 4/540 (0%) Query: 1 MFPISRWKHRTLAAALTALALSFAPQELSFAPQAMAAGK-TITAVMHSDLRVIDPIMTTA 59 M P R LA+ L A A+ +P AP AAGK TITAVMHSDLRVIDP TTA Sbjct: 1 MSPQLRRARSALASWLVASAVLLSP---GLAPDVFAAGKKTITAVMHSDLRVIDPGFTTA 57 Query: 60 YITRDHGYMIYDTLLATDSNFKIQPQMADWKVSDDKLTYTFTLRDGLKWHDGAPVTAEDC 119 YITRDHGYM+YDTL+ATDS+FK+QPQMADWKVSDDKLTYTFTLRDGLKWHDG PVTAEDC Sbjct: 58 YITRDHGYMVYDTLVATDSSFKVQPQMADWKVSDDKLTYTFTLRDGLKWHDGTPVTAEDC 117 Query: 120 VASLQRWGKVDGMGQKLMDFVASLEATDAKTITLKLKEPYGLVLESIGKPSSRVPFMMPK 179 VASL+RWG+ DGMGQKLMDF ASLE+ DAKTI LKLKEPYGLVLESIGKPSS VPFMMPK Sbjct: 118 VASLKRWGRNDGMGQKLMDFTASLESPDAKTIVLKLKEPYGLVLESIGKPSSYVPFMMPK 177 Query: 180 RLAETPPDKPIPEQIGSGPFKFVQAEFQPGVKAVYEKNKDYVPRKEPASWTAGGKVVKVD 239 RLAETP + IPEQIGSGPFKFV+AEFQPGVKAVYEKN DYVPRKEPASWTAGGKVVKVD Sbjct: 178 RLAETPQGQQIPEQIGSGPFKFVKAEFQPGVKAVYEKNTDYVPRKEPASWTAGGKVVKVD 237 Query: 240 RVEWVTMADAQTAVNALQSGDIDFMENLPFDMLPVLEANPDLKIDVLNKFGFQTLGRMNF 299 RVEW+TM DAQTAVNA+QSGDIDFME P+++LPVLEAN +L +DVLNKFGFQTLGRMNF Sbjct: 238 RVEWITMPDAQTAVNAVQSGDIDFMEAPPYELLPVLEANSELTLDVLNKFGFQTLGRMNF 297 Query: 300 LYPPFDNPKVRRAAFLAMNQKDVLDALVGNAKYQRICGAFFVCGTPLETDVGAETLVKGN 359 L PPFDN KVRRAAFLA+NQKDVLDALVGNAKYQ+ICGA FVCGTPLETDVGAETL+KGN Sbjct: 298 LNPPFDNVKVRRAAFLALNQKDVLDALVGNAKYQKICGAVFVCGTPLETDVGAETLIKGN 357 Query: 360 GLAEAKKALAASGYDGTPVVIMIPGDVQTLKGPPTVAAQLLRAAGFNVDAQVTDWQTVVS 419 G+AEAKK LA SGYDGTP+ IM PGDV TLK P VAAQLLR AGF VD Q TDWQTVV+ Sbjct: 358 GMAEAKKLLAESGYDGTPIAIMAPGDVVTLKAQPIVAAQLLREAGFKVDLQATDWQTVVT 417 Query: 420 RRASQKPPKEGGWNMFFTNWVAADVSDPIVNASITGRGKNGGWFGWAEDAKIEELRDKFA 479 RRASQKP KEGGWNMFFTNWV ADV++P+ N S+ GRG GGWFGWAEDA IE+LRD FA Sbjct: 418 RRASQKPVKEGGWNMFFTNWVGADVANPVANVSVGGRGTKGGWFGWAEDADIEKLRDAFA 477 Query: 480 RAGSAEEKKKIAAEIQTEAYDQVIYVPLGQYTIPSAWRKSLTGVLDGPATPIFWNIDKSE 539 RA S EE+KKIA EIQ Y++VIY+PLGQY PS WRKSL+GVLDGPATP+FWNI+K + Sbjct: 478 RASSPEEQKKIATEIQKLNYERVIYIPLGQYLGPSVWRKSLSGVLDGPATPVFWNIEKKD 537