BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0001.p (452 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001110365.1| D-amino acid dehydrogenase small subunit [Bu... 584 e-165 ref|YP_001754220.1| D-amino acid dehydrogenase small subunit [Me... 579 e-163 gb|EFV86805.1| D-amino-acid dehydrogenase [Achromobacter xylosox... 574 e-162 gb|EGP42525.1| D-amino acid dehydrogenase small subunit [Achromo... 572 e-161 ref|YP_003980338.1| D-amino acid dehydrogenase small subunit [Ac... 567 e-159 >ref|YP_001110365.1| D-amino acid dehydrogenase small subunit [Burkholderia vietnamiensis G4] gb|ABO59562.1| D-amino acid dehydrogenase small subunit [Burkholderia vietnamiensis G4] Length = 421 Score = 584 bits (1506), Expect = e-165, Method: Compositional matrix adjust. Identities = 288/409 (70%), Positives = 325/409 (79%), Gaps = 8/409 (1%) Query: 1 MPHIAIIGAGITGVTTAYALLERGYKVTVLDRHRYAAMETSFANGGQLSASNAEVWNSAA 60 M IAIIGAGITGVTTAYAL +RGY VTVL+RHRYAAMETSFANGGQLSASNAEVWNS+A Sbjct: 1 MSRIAIIGAGITGVTTAYALAQRGYSVTVLERHRYAAMETSFANGGQLSASNAEVWNSSA 60 Query: 61 TILKGLRWMLRSDAPLLMNPKPSWHKYSWIGEFVGHITRYRSNTIETTRLAIEARKHLFS 120 T+LKGLRWML+SDAPLLMNP+PSWHKYSWIGEF+ I Y NTIET RLAI AR+HLFS Sbjct: 61 TVLKGLRWMLKSDAPLLMNPRPSWHKYSWIGEFLRQIPNYHDNTIETVRLAIAAREHLFS 120 Query: 121 IAQRENIAFDLERRGILHVYHDKAGFEAGLKVNTLLQQGGLDRRPVTSDEIRVIEPALQT 180 IA+RE+I FDLERRGILH Y +A F+A KVN LL+ GGLDRRPV+++EI IEPAL Sbjct: 121 IAEREHIDFDLERRGILHFYSTRAEFDAATKVNELLRAGGLDRRPVSANEITCIEPALHG 180 Query: 181 ACYGGFFTPSDATGDIHKFTRGLAGACVRRGASFVHEADVDTIARGD-DGFRIGWNEAAS 239 YGGFFT SDATGDIHKFTRGLA ACVR G F +E +VD ++ DG I Sbjct: 181 DFYGGFFTESDATGDIHKFTRGLAEACVRHGVEFRYETNVDALSVNQPDGISISTQTGED 240 Query: 240 HEAAVATRHQLQADGIVICAGVASRHFASLLNDRVNVYPVKGYSITVQLDAPQSRNAAPT 299 +V DG+VICAGV SR FAS+L D VN+YPVKGYSITV LD SR AP Sbjct: 241 RSTSV-------FDGVVICAGVGSRGFASVLGDHVNIYPVKGYSITVCLDDEDSRRDAPW 293 Query: 300 VSLLDEAAKIVTSRLGADRFRVAGTAEFNGFNRDIRADRIQPLVDWVRHHFPKIDTSKVV 359 VSLLD+ AKIVTSRLG DRFRVAGTAE NGFNRDIRADRI+PLV W R HFP + T++ + Sbjct: 294 VSLLDDKAKIVTSRLGRDRFRVAGTAELNGFNRDIRADRIEPLVRWTRDHFPGVSTARTI 353 Query: 360 PWAGLRPMMPNMMPVVRAGRIPGVFYNTGHGHLGWTLSAATAQMVAQAI 408 PWAGLRPM+P+M+P V AGR PGVFYNTGHGHLGWTLSAATA+++A + Sbjct: 354 PWAGLRPMLPSMLPRVGAGRTPGVFYNTGHGHLGWTLSAATAELLADVV 402 >ref|YP_001754220.1| D-amino acid dehydrogenase small subunit [Methylobacterium radiotolerans JCM 2831] gb|ACB23537.1| D-amino-acid dehydrogenase [Methylobacterium radiotolerans JCM 2831] Length = 420 Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust. Identities = 279/408 (68%), Positives = 323/408 (79%), Gaps = 3/408 (0%) Query: 1 MPHIAIIGAGITGVTTAYALLERGYKVTVLDRHRYAAMETSFANGGQLSASNAEVWNSAA 60 M HIA+IGAGITGVTTAYAL +RGY+VTVLDR RYAAMETSFANGGQLSA NAEVWN + Sbjct: 1 MTHIAVIGAGITGVTTAYALAQRGYRVTVLDRQRYAAMETSFANGGQLSACNAEVWNKLS 60 Query: 61 TILKGLRWMLRSDAPLLMNPKPSWHKYSWIGEFVGHITRYRSNTIETTRLAIEARKHLFS 120 T+++GLRWM R DAPLLMNPK SWHK SW+ EFV I YR NT+ET RLA++AR+ LF+ Sbjct: 61 TVMQGLRWMTRRDAPLLMNPKLSWHKLSWMAEFVREIAHYRENTVETVRLALKAREALFA 120 Query: 121 IAQRENIAFDLERRGILHVYHDKAGFEAGLKVNTLLQQGGLDRRPVTSDEIRVIEPALQT 180 +A+ E I FDL+ RGILH Y D+A FE VN LL++GGL+R VT +EIR IEP L Sbjct: 121 MAEAEGIDFDLKTRGILHFYRDRASFEKATAVNALLREGGLERYAVTPEEIRAIEPTLAG 180 Query: 181 ACYGGFFTPSDATGDIHKFTRGLAGACVRRGASFVHEADVDTIARGDDGFRIGWNEAASH 240 +GGFFTPSDATGDIHKFTRGLA AC RRG FV +A V+TIA G+ G+ + W +A Sbjct: 181 RYHGGFFTPSDATGDIHKFTRGLAAACARRGVRFVQDASVETIAPGEGGYAVRWRDAGQ- 239 Query: 241 EAAVATRHQLQADGIVICAGVASRHFASLLNDRVNVYPVKGYSITVQLDAPQSRNAAPTV 300 L+AD +VICAG ASRHFA++L DRVNVYPVKGYSITV L P+++ AAP V Sbjct: 240 --PAGDARVLRADAVVICAGCASRHFAAMLGDRVNVYPVKGYSITVNLLTPEAQKAAPEV 297 Query: 301 SLLDEAAKIVTSRLGADRFRVAGTAEFNGFNRDIRADRIQPLVDWVRHHFPKIDTSKVVP 360 S+LDEAAKIVTSRLG +R RVAGTAEFNGFNRDIR DRIQPLVDW R FP +DT +VV Sbjct: 298 SILDEAAKIVTSRLGDERLRVAGTAEFNGFNRDIRHDRIQPLVDWTREQFPLVDTDRVVA 357 Query: 361 WAGLRPMMPNMMPVVRAGRIPGVFYNTGHGHLGWTLSAATAQMVAQAI 408 W+GLRPM+PNM+P V GR PGVFYNTGHGHLGWTLS ATA++VA AI Sbjct: 358 WSGLRPMLPNMLPKVGRGRRPGVFYNTGHGHLGWTLSGATAELVAGAI 405 >gb|EFV86805.1| D-amino-acid dehydrogenase [Achromobacter xylosoxidans C54] Length = 409 Score = 574 bits (1480), Expect = e-162, Method: Compositional matrix adjust. Identities = 280/410 (68%), Positives = 326/410 (79%), Gaps = 6/410 (1%) Query: 1 MPHIAIIGAGITGVTTAYALLERGYKVTVLDRHRYAAMETSFANGGQLSASNAEVWNSAA 60 MP IAIIGAGITGVT+AYAL + GY +TV DR RY AMETS+ANGGQLSASNAEVWNSAA Sbjct: 1 MPRIAIIGAGITGVTSAYALSKLGYDITVYDRQRYPAMETSYANGGQLSASNAEVWNSAA 60 Query: 61 TILKGLRWMLRSDAPLLMNPKPSWHKYSWIGEFVGHITRYRSNTIETTRLAIEARKHLFS 120 TI+KGLRW+ R DAPLL+NP+PSWHKYSW+ +F+G I YR NTI TTR+AIEAR+HL++ Sbjct: 61 TIMKGLRWLGRHDAPLLLNPRPSWHKYSWLAQFMGQIRNYRQNTIATTRMAIEARQHLYA 120 Query: 121 IAQRENIAFDLERRGILHVYHDKAGFEAGLKVNTLLQQGGLDRRPVTSDEIRVIEPALQT 180 +A+ E I FDLERRGILH+YHD A FE + N LL++GGL+R VT +EIR IEP LQT Sbjct: 121 MAEEEGIDFDLERRGILHIYHDAASFETARRANALLREGGLERHAVTPEEIRGIEPTLQT 180 Query: 181 ACYGGFFTPSDATGDIHKFTRGLAGACVRRGASFVHEADVDTIARGDDGFRIGWNEAASH 240 C+GGF+TPSDATGDIHKFT GLA AC RRG F +AD+ I+R DG + A Sbjct: 181 PCHGGFYTPSDATGDIHKFTSGLARACARRGVRFEQDADIRAISR--DGLPYVLDLARED 238 Query: 241 EAAVATRHQLQADGIVICAGVASRHFASLLNDRVNVYPVKGYSITVQLDAPQSRNAAPTV 300 R Q + D IV+CAG ASR FA L DR+N+YPVKGYSI+V LD S+ AAP+V Sbjct: 239 G---TRREQHETDAIVVCAGAASRQFARQLGDRLNIYPVKGYSISVHLDDAASQAAAPSV 295 Query: 301 SLLDEAAKIVTSRLGADRFRVAGTAEFNGFNRDIRADRIQPLVDWVRHHFPKIDTSKVVP 360 SLLDEAAKIVTSRLG DRFRVAGTAEFNGFN DIRA+RIQPLVDW R HFP + T++VVP Sbjct: 296 SLLDEAAKIVTSRLG-DRFRVAGTAEFNGFNLDIRAERIQPLVDWTRRHFPGVRTARVVP 354 Query: 361 WAGLRPMMPNMMPVVRAGRIPGVFYNTGHGHLGWTLSAATAQMVAQAIDD 410 W GLRPMMP+MMP V G+ PGVFYNTGHGHLGWTLSAATAQM+A ++ + Sbjct: 355 WCGLRPMMPDMMPRVGPGKRPGVFYNTGHGHLGWTLSAATAQMLAASVRE 404 >gb|EGP42525.1| D-amino acid dehydrogenase small subunit [Achromobacter xylosoxidans AXX-A] Length = 409 Score = 572 bits (1473), Expect = e-161, Method: Compositional matrix adjust. Identities = 279/410 (68%), Positives = 327/410 (79%), Gaps = 6/410 (1%) Query: 1 MPHIAIIGAGITGVTTAYALLERGYKVTVLDRHRYAAMETSFANGGQLSASNAEVWNSAA 60 MP IAIIGAGITGVT+AYAL + GY VTV DR RY AMETS+ANGGQLSASNAEVWNSAA Sbjct: 1 MPRIAIIGAGITGVTSAYALSKLGYDVTVYDRQRYPAMETSYANGGQLSASNAEVWNSAA 60 Query: 61 TILKGLRWMLRSDAPLLMNPKPSWHKYSWIGEFVGHITRYRSNTIETTRLAIEARKHLFS 120 T++KGLRW+ R +APLL+NP+PSWHKYSW+ +F+G I YR NTI TTR+AIEAR+HL++ Sbjct: 61 TVMKGLRWLGRHNAPLLLNPRPSWHKYSWLAQFMGQIRNYRQNTIATTRMAIEAREHLYA 120 Query: 121 IAQRENIAFDLERRGILHVYHDKAGFEAGLKVNTLLQQGGLDRRPVTSDEIRVIEPALQT 180 +A E I FDL+RRGILH+YHD A FE + N LL++GGL+R VT +EIR IEP L T Sbjct: 121 MAVEEGIDFDLQRRGILHIYHDAASFETARRANALLREGGLERHAVTPEEIRGIEPTLST 180 Query: 181 ACYGGFFTPSDATGDIHKFTRGLAGACVRRGASFVHEADVDTIARGDDGFRIGWNEAASH 240 C+GGF+TPSDATGDIHKFT GLA AC+RRG F +AD+ I+R DG + A Sbjct: 181 PCHGGFYTPSDATGDIHKFTSGLAQACLRRGVRFEQDADIRAISR--DGLPYVLDVARED 238 Query: 241 EAAVATRHQLQADGIVICAGVASRHFASLLNDRVNVYPVKGYSITVQLDAPQSRNAAPTV 300 A R Q +AD IV+CAG ASR FA L DR+N+YPVKGYSI+V LD S+ AAPTV Sbjct: 239 G---ARREQHEADAIVVCAGAASRQFARQLGDRLNIYPVKGYSISVHLDDAASQAAAPTV 295 Query: 301 SLLDEAAKIVTSRLGADRFRVAGTAEFNGFNRDIRADRIQPLVDWVRHHFPKIDTSKVVP 360 SLLDEAAKIVTSRLG +RFRVAGTAEFNGFN DIRA+RIQPLVDW R HFP + T++VVP Sbjct: 296 SLLDEAAKIVTSRLG-ERFRVAGTAEFNGFNLDIRAERIQPLVDWTRRHFPGVRTARVVP 354 Query: 361 WAGLRPMMPNMMPVVRAGRIPGVFYNTGHGHLGWTLSAATAQMVAQAIDD 410 W GLRPMMP+MMP V G+ PGVFYNTGHGHLGWTLSAATAQM+A ++ + Sbjct: 355 WCGLRPMMPDMMPRVGPGKRPGVFYNTGHGHLGWTLSAATAQMLAASVRE 404 >ref|YP_003980338.1| D-amino acid dehydrogenase small subunit [Achromobacter xylosoxidans A8] gb|ADP17623.1| D-amino acid dehydrogenase small subunit 4 [Achromobacter xylosoxidans A8] Length = 409 Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust. Identities = 280/408 (68%), Positives = 320/408 (78%), Gaps = 6/408 (1%) Query: 1 MPHIAIIGAGITGVTTAYALLERGYKVTVLDRHRYAAMETSFANGGQLSASNAEVWNSAA 60 MP IAIIGAGITGVT+AYAL + GY VTV DR RY AMETS+ANGGQLSASNAEVWNS A Sbjct: 1 MPRIAIIGAGITGVTSAYALSKLGYDVTVYDRQRYPAMETSYANGGQLSASNAEVWNSTA 60 Query: 61 TILKGLRWMLRSDAPLLMNPKPSWHKYSWIGEFVGHITRYRSNTIETTRLAIEARKHLFS 120 TILKGLRW+ R +APLL+NP+ SWHKYSW+ +F+G I YR NTIETTRLAI AR+HL++ Sbjct: 61 TILKGLRWLGRHNAPLLLNPRFSWHKYSWLAQFIGQIRNYRKNTIETTRLAIAARQHLYA 120 Query: 121 IAQRENIAFDLERRGILHVYHDKAGFEAGLKVNTLLQQGGLDRRPVTSDEIRVIEPALQT 180 +A+ E I FDLERRGILH+YHD A FE + N LLQ+GGL+R V+ E R IEP LQT Sbjct: 121 MAEEEGIDFDLERRGILHIYHDAASFETARRANALLQEGGLERYAVSPQEARDIEPTLQT 180 Query: 181 ACYGGFFTPSDATGDIHKFTRGLAGACVRRGASFVHEADVDTIARGDDGFRIGWNEAASH 240 +CYGGF+TPSDATGDIHKFT GLA AC RRG F +AD+ I+ DG + A Sbjct: 181 SCYGGFYTPSDATGDIHKFTSGLARACERRGVRFAQDADIRNISL--DGAPYVLDVA--- 235 Query: 241 EAAVATRHQLQADGIVICAGVASRHFASLLNDRVNVYPVKGYSITVQLDAPQSRNAAPTV 300 A R Q +AD IV+CAG SR FA L DR+N+YPVKGYSI+V LD S+ AAP V Sbjct: 236 REGGARREQHEADAIVVCAGAVSRQFARQLGDRLNIYPVKGYSISVHLDDAASQAAAPQV 295 Query: 301 SLLDEAAKIVTSRLGADRFRVAGTAEFNGFNRDIRADRIQPLVDWVRHHFPKIDTSKVVP 360 SLLDEAAKIVTSRLG DRFRVAGTAEFNGFN DIRA+R+QPLVDW R HFP I TS+VVP Sbjct: 296 SLLDEAAKIVTSRLG-DRFRVAGTAEFNGFNMDIRAERVQPLVDWTRKHFPGIRTSRVVP 354 Query: 361 WAGLRPMMPNMMPVVRAGRIPGVFYNTGHGHLGWTLSAATAQMVAQAI 408 W GLRPM P+MMP V G+ PGVFYNTGHGHLGWTLSAATAQM+A ++ Sbjct: 355 WCGLRPMTPSMMPRVGPGKRPGVFYNTGHGHLGWTLSAATAQMLAASV 402