BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0007.p (396 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001236856.1| putative branched chain amino acid binding p... 730 0.0 ref|YP_001208677.1| branched chain amino acid ABC transporter su... 728 0.0 ref|YP_529972.1| putative branched chain amino acid periplasmic ... 680 0.0 ref|NP_767638.1| periplasmic substrate binding protein [Bradyrhi... 675 0.0 ref|YP_488284.1| extracellular ligand-binding receptor [Rhodopse... 673 0.0 >ref|YP_001236856.1| putative branched chain amino acid binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ32950.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Bradyrhizobium sp. BTAi1] Length = 395 Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/396 (88%), Positives = 378/396 (95%), Gaps = 1/396 (0%) Query: 1 MKSGFLAAVAACSLMLAAPAMAQGVKIGILNDQSGVYADYGGKYSLEAARMAVEDFGGEV 60 MKS LA A +LM+AAPA AQ VKIGILNDQSGVYADYGGKYS+EAA+MA+EDFGGEV Sbjct: 1 MKSSLLAFAAVGALMVAAPASAQ-VKIGILNDQSGVYADYGGKYSVEAAKMAIEDFGGEV 59 Query: 61 LGQKIEIVTADHQNKPDLATAIARRWYEVENVDMITELTTSSVALAVQELSKEKKKIDIV 120 LGQK+E+VTADHQNKPDLA++IARRWY+ E VDMITELTTSSVALA+Q+LSKEKKKIDIV Sbjct: 60 LGQKVELVTADHQNKPDLASSIARRWYDTEGVDMITELTTSSVALAIQDLSKEKKKIDIV 119 Query: 121 VGAATSRITGDACTPYSFHWAYDTRALAVGTGGALTEAGGDTWFFLTADYAFGYALEKDT 180 VGAATSRITGDACTPY FHWAYDTRALAVGTGGAL E+GGD+WFF+TADYAFGYALEKDT Sbjct: 120 VGAATSRITGDACTPYGFHWAYDTRALAVGTGGALVESGGDSWFFMTADYAFGYALEKDT 179 Query: 181 SDIVVSKKGKVVGSVRVPLNSSDFSSFLLQAQASKAKIIGLANAGLDTTNSIKQAAEFGI 240 SDIV SK GKV+GSVR+PLNSSDFSSFLLQAQ+SKAKIIGLANAGLDTTNSIKQAAEFGI Sbjct: 180 SDIVTSKGGKVLGSVRIPLNSSDFSSFLLQAQSSKAKIIGLANAGLDTTNSIKQAAEFGI 239 Query: 241 VRGGQKLAGLLMTLSEVHGLGLEAAQGLVLTEGFYWDHDDASRAFSERFFKRTSRMPSMI 300 V+GGQKLAGLLMTLSEVHGLGLEAAQGLVLTEGFYWDHDD +RAFSERF KRT RMPSMI Sbjct: 240 VKGGQKLAGLLMTLSEVHGLGLEAAQGLVLTEGFYWDHDDKARAFSERFMKRTGRMPSMI 299 Query: 301 HAGTYSATLSYLKAVKAAGTKDSEAVAAKLKELPVDDAFAKGKVLANGRMVHDLYLFEVK 360 HAGTYSATLSYLKAVKAAGTKDS+AVAAKLKELPVDDAFA+GKVLANGRMVHD+YLFEVK Sbjct: 300 HAGTYSATLSYLKAVKAAGTKDSDAVAAKLKELPVDDAFAQGKVLANGRMVHDMYLFEVK 359 Query: 361 KPSESKKPWDYYKQIAVVPGDQAFFTAKESGCPLTK 396 KPSESKKPWDYYKQ+A VPGD+AFF+AK+SGCPLTK Sbjct: 360 KPSESKKPWDYYKQLATVPGDKAFFSAKDSGCPLTK 395 >ref|YP_001208677.1| branched chain amino acid ABC transporter substrate-binding protein [Bradyrhizobium sp. ORS 278] emb|CAL80462.1| putative ABC transporter, substrate binding protein; possible branched chain amino acid binding protein [Bradyrhizobium sp. ORS 278] Length = 395 Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/396 (88%), Positives = 375/396 (94%), Gaps = 1/396 (0%) Query: 1 MKSGFLAAVAACSLMLAAPAMAQGVKIGILNDQSGVYADYGGKYSLEAARMAVEDFGGEV 60 MK G LA A +LM+AAPA AQ VKIGILNDQSGVYADYGGKYS+EAA+MA+EDFGGEV Sbjct: 1 MKLGLLAFAAVGALMVAAPASAQ-VKIGILNDQSGVYADYGGKYSVEAAKMAIEDFGGEV 59 Query: 61 LGQKIEIVTADHQNKPDLATAIARRWYEVENVDMITELTTSSVALAVQELSKEKKKIDIV 120 LGQK+E+VTADHQNKPDLA+ IARRWY+ E VDMITELTTSSVALA+QELSKEKKKIDIV Sbjct: 60 LGQKVELVTADHQNKPDLASTIARRWYDTEGVDMITELTTSSVALAIQELSKEKKKIDIV 119 Query: 121 VGAATSRITGDACTPYSFHWAYDTRALAVGTGGALTEAGGDTWFFLTADYAFGYALEKDT 180 VGAATSRITGDACTPY FHWAYDTRALAVGTGGAL E+GGD+WFF+TADYAFGYALEKDT Sbjct: 120 VGAATSRITGDACTPYGFHWAYDTRALAVGTGGALVESGGDSWFFMTADYAFGYALEKDT 179 Query: 181 SDIVVSKKGKVVGSVRVPLNSSDFSSFLLQAQASKAKIIGLANAGLDTTNSIKQAAEFGI 240 SDIV SK GKV+GSVR+PLNSSDFSSFLLQAQ+SKAKIIGLANAGLDTTNSIKQAAEFGI Sbjct: 180 SDIVTSKGGKVLGSVRIPLNSSDFSSFLLQAQSSKAKIIGLANAGLDTTNSIKQAAEFGI 239 Query: 241 VRGGQKLAGLLMTLSEVHGLGLEAAQGLVLTEGFYWDHDDASRAFSERFFKRTSRMPSMI 300 V+GGQKLAGLLMTLSEVHGLGLEAAQGLVLTEGFYWDHDD +RAFSERF KRT RMPSMI Sbjct: 240 VKGGQKLAGLLMTLSEVHGLGLEAAQGLVLTEGFYWDHDDKARAFSERFMKRTGRMPSMI 299 Query: 301 HAGTYSATLSYLKAVKAAGTKDSEAVAAKLKELPVDDAFAKGKVLANGRMVHDLYLFEVK 360 HAGTYSATLSYLKAVKAAGTKDS+AVAAKLKELPVDDAFA+GKVLANGRMVHD+YLFEVK Sbjct: 300 HAGTYSATLSYLKAVKAAGTKDSDAVAAKLKELPVDDAFAQGKVLANGRMVHDMYLFEVK 359 Query: 361 KPSESKKPWDYYKQIAVVPGDQAFFTAKESGCPLTK 396 KPSESKKPWDYYKQ+A V GD+AFFT K+SGCPLTK Sbjct: 360 KPSESKKPWDYYKQLATVSGDKAFFTPKDSGCPLTK 395 >ref|YP_529972.1| putative branched chain amino acid periplasmic binding protein of ABC transporter [Rhodopseudomonas palustris BisB18] gb|ABD85653.1| putative branched chain amino acid periplasmic binding protein of ABC transporter [Rhodopseudomonas palustris BisB18] Length = 399 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/399 (83%), Positives = 363/399 (90%), Gaps = 3/399 (0%) Query: 1 MKSGFLAAVAACSLMLAAPAM---AQGVKIGILNDQSGVYADYGGKYSLEAARMAVEDFG 57 MK G + VAA +MLA A AQ VKIGILNDQSGVYADYGGK+SLEAARMAVEDFG Sbjct: 1 MKFGNWSIVAASVVMLATSAQGAAAQAVKIGILNDQSGVYADYGGKWSLEAARMAVEDFG 60 Query: 58 GEVLGQKIEIVTADHQNKPDLATAIARRWYEVENVDMITELTTSSVALAVQELSKEKKKI 117 GEVLGQKIEIVTADHQNKPD A +IAR+WY+V+ VDMITELTTSSVALAVQ+LS+EKKKI Sbjct: 61 GEVLGQKIEIVTADHQNKPDTAISIARKWYDVDGVDMITELTTSSVALAVQDLSREKKKI 120 Query: 118 DIVVGAATSRITGDACTPYSFHWAYDTRALAVGTGGALTEAGGDTWFFLTADYAFGYALE 177 DIVVGAATSRITGDAC PY FHWA+DT ALAVGTGGAL EAGG+TWFFLTADYAFGYALE Sbjct: 121 DIVVGAATSRITGDACQPYGFHWAFDTHALAVGTGGALVEAGGNTWFFLTADYAFGYALE 180 Query: 178 KDTSDIVVSKKGKVVGSVRVPLNSSDFSSFLLQAQASKAKIIGLANAGLDTTNSIKQAAE 237 KDTS+IV++K GKV+G+VR PLNSSDFSSFLLQAQ+SKAKI+GLANAGLDT NSIKQA+E Sbjct: 181 KDTSEIVLAKGGKVLGAVRHPLNSSDFSSFLLQAQSSKAKIVGLANAGLDTANSIKQASE 240 Query: 238 FGIVRGGQKLAGLLMTLSEVHGLGLEAAQGLVLTEGFYWDHDDASRAFSERFFKRTSRMP 297 FGIV GGQKLAGLLMTL+EVHGLGL+AAQGLVLTE FYWD DD SRAF+E+FFKRT RMP Sbjct: 241 FGIVAGGQKLAGLLMTLAEVHGLGLQAAQGLVLTEAFYWDRDDTSRAFAEKFFKRTGRMP 300 Query: 298 SMIHAGTYSATLSYLKAVKAAGTKDSEAVAAKLKELPVDDAFAKGKVLANGRMVHDLYLF 357 +MI AGTYSATLSYLKAVKAAG+KD+EAVA KLKELPVDDAFAKGKVLANGR VHDLYLF Sbjct: 301 NMIQAGTYSATLSYLKAVKAAGSKDTEAVAKKLKELPVDDAFAKGKVLANGRFVHDLYLF 360 Query: 358 EVKKPSESKKPWDYYKQIAVVPGDQAFFTAKESGCPLTK 396 EVKKPSESK+ WDYYK +A VPGD+AF TA ESGCPLTK Sbjct: 361 EVKKPSESKRAWDYYKLLATVPGDKAFPTAAESGCPLTK 399 >ref|NP_767638.1| periplasmic substrate binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC46263.1| blr0998 [Bradyrhizobium japonicum USDA 110] Length = 397 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/375 (86%), Positives = 352/375 (93%), Gaps = 1/375 (0%) Query: 23 QGVKIGILNDQSGVYADYGGKYSLEAARMAVEDFGGEVLGQKIEIVTADHQNKPDLATAI 82 QGVKIGILNDQSGVYADYGGK+S+EAARMA+EDFGGEVLGQKIE+VTADHQNKPDLA++I Sbjct: 23 QGVKIGILNDQSGVYADYGGKWSVEAARMAIEDFGGEVLGQKIELVTADHQNKPDLASSI 82 Query: 83 ARRWYEVENVDMITELTTSSVALAVQELSKEKKKIDIVVGAATSRITGDACTPYSFHWAY 142 ARRWY+VENVDMITELTTSSVALA+ ELSKEKKKIDIVVGAATSR+TGDAC PY FHWAY Sbjct: 83 ARRWYDVENVDMITELTTSSVALAIHELSKEKKKIDIVVGAATSRLTGDACQPYGFHWAY 142 Query: 143 DTRALAVGTGGALTEAGGDTWFFLTADYAFGYALEKDTSDIVVSKKGKVVGSVRVPLNSS 202 DTRAL VGTGGALT+AGGDTW+FLTADYAFGYALEKDTS+IV + GKVVGSVRVPLNSS Sbjct: 143 DTRALGVGTGGALTKAGGDTWYFLTADYAFGYALEKDTSEIVTANGGKVVGSVRVPLNSS 202 Query: 203 DFSSFLLQAQASKAKIIGLANAGLDTTNSIKQAAEFGIVRGGQKLAGLLMTLSEVHGLGL 262 DFSSFLLQAQ+SKAKI+GLANAGLDTTNSIKQA+EFGIV GQKLAGLLMTL+EV+GLGL Sbjct: 203 DFSSFLLQAQSSKAKIVGLANAGLDTTNSIKQASEFGIVASGQKLAGLLMTLAEVNGLGL 262 Query: 263 EAAQGLVLTEGFYWDHDDASRAFSERFFKRTSRMPSMIHAGTYSATLSYLKAVKAAGTKD 322 +AAQGLVLTEG+YWD +D +R ERF KRT RMPSMIHAGTYSATLSYLKAVKAAGTKD Sbjct: 263 QAAQGLVLTEGYYWDLNDKTRNLGERFLKRTGRMPSMIHAGTYSATLSYLKAVKAAGTKD 322 Query: 323 SEAVAAKLKELPVDDAFAK-GKVLANGRMVHDLYLFEVKKPSESKKPWDYYKQIAVVPGD 381 EAVA KLKELPVDD FA+ GKVL NGRMVHD+YLFEVKKP+ESKKPWDYYK +A VPGD Sbjct: 323 PEAVAKKLKELPVDDDFAQGGKVLENGRMVHDMYLFEVKKPAESKKPWDYYKLLATVPGD 382 Query: 382 QAFFTAKESGCPLTK 396 +AFFTAK+SGCPLTK Sbjct: 383 KAFFTAKDSGCPLTK 397 >ref|YP_488284.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris HaA2] gb|ABD09373.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris HaA2] Length = 397 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/390 (83%), Positives = 357/390 (91%) Query: 7 AAVAACSLMLAAPAMAQGVKIGILNDQSGVYADYGGKYSLEAARMAVEDFGGEVLGQKIE 66 AA+A +L APA AQGVKIGILNDQSGVYADYGGK+SLEAA+MAVEDFGGEVLGQKIE Sbjct: 8 AALATSALFAIAPASAQGVKIGILNDQSGVYADYGGKWSLEAAKMAVEDFGGEVLGQKIE 67 Query: 67 IVTADHQNKPDLATAIARRWYEVENVDMITELTTSSVALAVQELSKEKKKIDIVVGAATS 126 IV+ADHQNKPD A AIAR+WY+V+ VDMITELTTSSVALA+Q+LS+EKKKIDIVVGAATS Sbjct: 68 IVSADHQNKPDTAVAIARKWYDVDGVDMITELTTSSVALAIQDLSREKKKIDIVVGAATS 127 Query: 127 RITGDACTPYSFHWAYDTRALAVGTGGALTEAGGDTWFFLTADYAFGYALEKDTSDIVVS 186 RITGDAC PY FHWAYDT ALAVGTGGAL +AGGD+WFFLTADYAFGYALEKDTS++V + Sbjct: 128 RITGDACQPYGFHWAYDTHALAVGTGGALVKAGGDSWFFLTADYAFGYALEKDTSEVVKA 187 Query: 187 KKGKVVGSVRVPLNSSDFSSFLLQAQASKAKIIGLANAGLDTTNSIKQAAEFGIVRGGQK 246 GKV+GSVR PLNSSDFSSFLLQAQ+SKAKIIGLANAGLDT NSIKQA+EFGIV GGQK Sbjct: 188 NGGKVLGSVRHPLNSSDFSSFLLQAQSSKAKIIGLANAGLDTANSIKQASEFGIVAGGQK 247 Query: 247 LAGLLMTLSEVHGLGLEAAQGLVLTEGFYWDHDDASRAFSERFFKRTSRMPSMIHAGTYS 306 LAGLL+TL+EVHGLGL+AAQGLVLTE +YWD DD SR F+ERFFKRTSRMP+MI AGTYS Sbjct: 248 LAGLLLTLAEVHGLGLKAAQGLVLTEAYYWDRDDKSREFAERFFKRTSRMPNMIQAGTYS 307 Query: 307 ATLSYLKAVKAAGTKDSEAVAAKLKELPVDDAFAKGKVLANGRMVHDLYLFEVKKPSESK 366 ATLSYLKAVKAAGTKD+EAVAAKLK+LPVDDAFAKGKVLANGR VHDLYLFEVKKP ESK Sbjct: 308 ATLSYLKAVKAAGTKDTEAVAAKLKKLPVDDAFAKGKVLANGRFVHDLYLFEVKKPEESK 367 Query: 367 KPWDYYKQIAVVPGDQAFFTAKESGCPLTK 396 KPWDYYK I+ V G AF +A ESGCPLT+ Sbjct: 368 KPWDYYKLISTVEGYMAFPSAAESGCPLTR 397