BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0001.p (438 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_950142.1| hexuronate transporter [Rhodopseudomonas palust... 644 0.0 ref|YP_001994256.1| major facilitator superfamily protein [Rhodo... 640 0.0 ref|YP_571512.1| major facilitator transporter [Rhodopseudomonas... 640 0.0 ref|YP_001208672.1| major facilitator superfamily permease [Brad... 633 e-179 ref|NP_767643.1| hypothetical protein blr1003 [Bradyrhizobium ja... 628 e-178 >ref|NP_950142.1| hexuronate transporter [Rhodopseudomonas palustris CGA009] emb|CAE30248.1| possible hexuronate transporter [Rhodopseudomonas palustris CGA009] Length = 428 Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/418 (75%), Positives = 366/418 (87%) Query: 10 TSEGTPKGAWQITFLLFLFMVVNFADKIVVGLAGVPIKKEMGLTQEQFGDLGSSFFLLFS 69 T++ TP+GAW+ITFLLFLFMVVNFADKIVVGLAGVPI +E+ L+ EQFG LGSSFF LFS Sbjct: 2 TAQPTPQGAWRITFLLFLFMVVNFADKIVVGLAGVPIMQELKLSPEQFGLLGSSFFFLFS 61 Query: 70 ISAIVVGFIVNRVATRWVLLILAVIWSLAQFPMVGTVSFTTLVICRIILGAGEGPAFSVA 129 I+AIVVGFIV+RV TRWVLL LA++W++AQFPMVG VSF T VICRIILGAGEGPAFSVA Sbjct: 62 ITAIVVGFIVHRVETRWVLLALALVWAVAQFPMVGEVSFATFVICRIILGAGEGPAFSVA 121 Query: 130 AHAIYKWFPDEKRTLPTAILSQGSAFGVILAVPALNWIIVNHSWHHAFGALGIVGLIWAV 189 AHAIYKWFPD +RTLPTAILSQGSAFGVILAVPALNWIIVNHSWH+AF ALGIVGL+WAV Sbjct: 122 AHAIYKWFPDHQRTLPTAILSQGSAFGVILAVPALNWIIVNHSWHYAFAALGIVGLMWAV 181 Query: 190 AWFALGKEGPLVSTSAVTADEPRIPYLKLLTSRTFIGCVVATFGAYWALSLGLTWFTSFI 249 AWFALGKEGPLV + AV A E RIPY +LLTSRTFIGCV+ATFGAYWALSLGLTWFT+FI Sbjct: 182 AWFALGKEGPLVPSPAVAAAEVRIPYARLLTSRTFIGCVLATFGAYWALSLGLTWFTTFI 241 Query: 250 IEGLGFSQHQAGFVSILPWIFGATIVLLTGWISQLMLTRGFTTRGARGVLGSVPLIVGGA 309 ++GLGFSQHQAG VSI PW+FGA +VL TGW+SQ ++ RG ++R ARGVLG+ PL+VGGA Sbjct: 242 VQGLGFSQHQAGLVSITPWVFGACVVLFTGWLSQRLMQRGVSSRMARGVLGAAPLLVGGA 301 Query: 310 ILAMLPYAPPGGIMIALLVIGSGLCGSIYVVCPPMLGEFTPVSQRGAIIAIYGALYTISG 369 I+ MLPY I LV+GSGLCGSIYVVCPPM+ EF PVSQRGA IAIYGALYT++G Sbjct: 302 IILMLPYIDSPTARIVALVVGSGLCGSIYVVCPPMIAEFAPVSQRGAAIAIYGALYTLAG 361 Query: 370 ILAPMVMGNVIQHAATPMAGYMSGFTINAAIMAGSGLLGLLLLWPNTERARLTGTSQP 427 I+AP VMG+V+QH+A+ + GY+ G+ IN A+M SG+ GLLLLWPNTERARL +++P Sbjct: 362 IIAPWVMGSVLQHSASLLHGYIVGYAINGAVMIASGVAGLLLLWPNTERARLLRSAEP 419 >ref|YP_001994256.1| major facilitator superfamily protein [Rhodopseudomonas palustris TIE-1] gb|ACF03781.1| major facilitator superfamily MFS_1 [Rhodopseudomonas palustris TIE-1] Length = 428 Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust. Identities = 315/417 (75%), Positives = 364/417 (87%) Query: 11 SEGTPKGAWQITFLLFLFMVVNFADKIVVGLAGVPIKKEMGLTQEQFGDLGSSFFLLFSI 70 ++ TP+GAW+ITFLLFLFMVVNFADKIVVGLAGVPI +E+ L+ EQFG LGSSFF LFSI Sbjct: 3 AQPTPQGAWRITFLLFLFMVVNFADKIVVGLAGVPIMQELKLSPEQFGLLGSSFFFLFSI 62 Query: 71 SAIVVGFIVNRVATRWVLLILAVIWSLAQFPMVGTVSFTTLVICRIILGAGEGPAFSVAA 130 +AIVVGFIVNRV TRWVLL LA++W++AQFPMVG VSF T VICRIILGAGEGPAFSVAA Sbjct: 63 TAIVVGFIVNRVETRWVLLALALVWAVAQFPMVGEVSFATFVICRIILGAGEGPAFSVAA 122 Query: 131 HAIYKWFPDEKRTLPTAILSQGSAFGVILAVPALNWIIVNHSWHHAFGALGIVGLIWAVA 190 HAIYKWFPD +RTLPTAILSQGSAFGVILAVPALNWIIVNHSWH+AF ALGIVGL+WAVA Sbjct: 123 HAIYKWFPDHQRTLPTAILSQGSAFGVILAVPALNWIIVNHSWHYAFAALGIVGLMWAVA 182 Query: 191 WFALGKEGPLVSTSAVTADEPRIPYLKLLTSRTFIGCVVATFGAYWALSLGLTWFTSFII 250 W ALGKEGPLV + A A E RIPY++LLTSRTFIGCV+ATFGAYWALSLGLTWFT+FI+ Sbjct: 183 WLALGKEGPLVPSPAAAAAEVRIPYVRLLTSRTFIGCVLATFGAYWALSLGLTWFTTFIV 242 Query: 251 EGLGFSQHQAGFVSILPWIFGATIVLLTGWISQLMLTRGFTTRGARGVLGSVPLIVGGAI 310 +GLGFSQHQAG VSI PW+FGA +VL TGW+SQ ++ RG ++R ARGVLG+ PL+VGGAI Sbjct: 243 QGLGFSQHQAGLVSITPWVFGACVVLFTGWLSQRLMQRGVSSRMARGVLGAAPLLVGGAI 302 Query: 311 LAMLPYAPPGGIMIALLVIGSGLCGSIYVVCPPMLGEFTPVSQRGAIIAIYGALYTISGI 370 + MLPY I LV+GSGLCGSIYVVCPPM+ EF PVSQRGA IAIYGALYT++GI Sbjct: 303 ILMLPYIDSPTARIVALVVGSGLCGSIYVVCPPMIAEFAPVSQRGAAIAIYGALYTLAGI 362 Query: 371 LAPMVMGNVIQHAATPMAGYMSGFTINAAIMAGSGLLGLLLLWPNTERARLTGTSQP 427 +AP VMG+V+QH+A+ + GY+ G+ IN A+M SG+ GLLLLWPNTERARL +++P Sbjct: 363 IAPWVMGSVLQHSASLLHGYIVGYAINGAVMIVSGVAGLLLLWPNTERARLLRSAEP 419 >ref|YP_571512.1| major facilitator transporter [Rhodopseudomonas palustris BisB5] gb|ABE41611.1| major facilitator superfamily MFS_1 [Rhodopseudomonas palustris BisB5] Length = 434 Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/417 (77%), Positives = 368/417 (88%) Query: 12 EGTPKGAWQITFLLFLFMVVNFADKIVVGLAGVPIKKEMGLTQEQFGDLGSSFFLLFSIS 71 + TPKGAW+ITFLLFLFMVVNFADKIVVGLAGVPI +E+ L+ EQFG LGSSFF LFSI+ Sbjct: 11 QSTPKGAWRITFLLFLFMVVNFADKIVVGLAGVPITRELNLSPEQFGLLGSSFFFLFSIT 70 Query: 72 AIVVGFIVNRVATRWVLLILAVIWSLAQFPMVGTVSFTTLVICRIILGAGEGPAFSVAAH 131 AI+VGFIVNRV TRWVLLILA+IW++AQFPMVGTVSFTTL+ICRIILGAGEGPAF+VAAH Sbjct: 71 AIIVGFIVNRVETRWVLLILALIWAVAQFPMVGTVSFTTLLICRIILGAGEGPAFAVAAH 130 Query: 132 AIYKWFPDEKRTLPTAILSQGSAFGVILAVPALNWIIVNHSWHHAFGALGIVGLIWAVAW 191 AIYKWFPD KRTLPTAILSQGSAFGVILAVPALNWIIVNHSWH+AFGALGIVGL+W AW Sbjct: 131 AIYKWFPDHKRTLPTAILSQGSAFGVILAVPALNWIIVNHSWHYAFGALGIVGLMWVAAW 190 Query: 192 FALGKEGPLVSTSAVTADEPRIPYLKLLTSRTFIGCVVATFGAYWALSLGLTWFTSFIIE 251 ALGKEGPLV T+A+ A E RIPY +LLTSRTF+GCV ATFGAYWALSLGLTWFT++II+ Sbjct: 191 VALGKEGPLVPTAAMAAAETRIPYARLLTSRTFVGCVAATFGAYWALSLGLTWFTTYIIK 250 Query: 252 GLGFSQHQAGFVSILPWIFGATIVLLTGWISQLMLTRGFTTRGARGVLGSVPLIVGGAIL 311 GLGFSQHQAG +SI+PW+FGA +VLL GW+SQ ++ RG +TR ARGVLGSVPL+VGG IL Sbjct: 251 GLGFSQHQAGLISIMPWVFGAIVVLLAGWLSQSLMGRGASTRHARGVLGSVPLVVGGLIL 310 Query: 312 AMLPYAPPGGIMIALLVIGSGLCGSIYVVCPPMLGEFTPVSQRGAIIAIYGALYTISGIL 371 +P+ IA LVIGSGLCGSIYVVCPPM+ EF PVSQRGA IAIYGALYT++GI+ Sbjct: 311 LTMPFIDNPTARIAALVIGSGLCGSIYVVCPPMIAEFAPVSQRGAAIAIYGALYTLAGIV 370 Query: 372 APMVMGNVIQHAATPMAGYMSGFTINAAIMAGSGLLGLLLLWPNTERARLTGTSQPA 428 AP+VMG+V+Q+AA+P GY++G+ IN A+M SGLLGLLLLWPNTERARL G A Sbjct: 371 APLVMGSVVQNAASPNEGYLAGYVINGAVMVVSGLLGLLLLWPNTERARLLGVEDAA 427 >ref|YP_001208672.1| major facilitator superfamily permease [Bradyrhizobium sp. ORS 278] emb|CAL80457.1| Putative permease of the Major Facilitator Superfamily [Bradyrhizobium sp. ORS 278] Length = 437 Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust. Identities = 305/420 (72%), Positives = 365/420 (86%) Query: 2 TTQATSKRTSEGTPKGAWQITFLLFLFMVVNFADKIVVGLAGVPIKKEMGLTQEQFGDLG 61 T ++ ++ ++ TPKGAW+ITFLLFLFM+VNFADKIVVGLAGVPI E+ L+ EQFG LG Sbjct: 7 TLKSNARASTASTPKGAWRITFLLFLFMLVNFADKIVVGLAGVPIMTELNLSAEQFGLLG 66 Query: 62 SSFFLLFSISAIVVGFIVNRVATRWVLLILAVIWSLAQFPMVGTVSFTTLVICRIILGAG 121 SSFFLLFS++AIVVGFIVN+V TRWVLL+LA++W++AQFPMVGTV FTTL+ICRIILGAG Sbjct: 67 SSFFLLFSLAAIVVGFIVNKVPTRWVLLVLALVWAVAQFPMVGTVGFTTLLICRIILGAG 126 Query: 122 EGPAFSVAAHAIYKWFPDEKRTLPTAILSQGSAFGVILAVPALNWIIVNHSWHHAFGALG 181 EGPA SVA HAIYKWFPDEKR +PTAILSQGSAFGVILAVPALNW+IVNH WH+AFGALG Sbjct: 127 EGPAASVAVHAIYKWFPDEKRAMPTAILSQGSAFGVILAVPALNWVIVNHGWHYAFGALG 186 Query: 182 IVGLIWAVAWFALGKEGPLVSTSAVTADEPRIPYLKLLTSRTFIGCVVATFGAYWALSLG 241 +VGL+W+ AW LG+EGPL V E R+PYL++LTSRTF+GCV ATFGAYWALSLG Sbjct: 187 VVGLMWSAAWLWLGREGPLAELDPVAVREQRVPYLQILTSRTFLGCVAATFGAYWALSLG 246 Query: 242 LTWFTSFIIEGLGFSQHQAGFVSILPWIFGATIVLLTGWISQLMLTRGFTTRGARGVLGS 301 LTWFT F+I+GLGFSQ QAGF+SILPWIFGA +VL TG+ SQ+++ RG +TR ARGVLG+ Sbjct: 247 LTWFTPFLIKGLGFSQAQAGFISILPWIFGACVVLTTGFASQMLMARGVSTRLARGVLGA 306 Query: 302 VPLIVGGAILAMLPYAPPGGIMIALLVIGSGLCGSIYVVCPPMLGEFTPVSQRGAIIAIY 361 PL++GGA++A +P+ IAL+V+GSGLCGSIYVVCPPM+GEFTPV+QRGA+I+IY Sbjct: 307 TPLVIGGALMAAMPHVDGASAKIALVVVGSGLCGSIYVVCPPMIGEFTPVAQRGAVISIY 366 Query: 362 GALYTISGILAPMVMGNVIQHAATPMAGYMSGFTINAAIMAGSGLLGLLLLWPNTERARL 421 GALYT++GI+AP+VMG +IQ + + + GYMSGFTINA IM SGLLGL LLWPNTERARL Sbjct: 367 GALYTLAGIIAPVVMGKMIQASGSMLEGYMSGFTINAVIMVISGLLGLALLWPNTERARL 426 >ref|NP_767643.1| hypothetical protein blr1003 [Bradyrhizobium japonicum USDA 110] dbj|BAC46268.1| blr1003 [Bradyrhizobium japonicum USDA 110] Length = 444 Score = 628 bits (1619), Expect = e-178, Method: Compositional matrix adjust. Identities = 338/435 (77%), Positives = 379/435 (87%), Gaps = 1/435 (0%) Query: 5 ATSKRTSEGTPKGAWQITFLLFLFMVVNFADKIVVGLAGVPIKKEMGLTQEQFGDLGSSF 64 A TS TPKGAW +TFLLFLFM+VNFADKIVVGLAGVPI ++ L+ EQFG LGSSF Sbjct: 10 AGKTTTSRETPKGAWTVTFLLFLFMLVNFADKIVVGLAGVPIMADLKLSPEQFGLLGSSF 69 Query: 65 FLLFSISAIVVGFIVNRVATRWVLLILAVIWSLAQFPMVGTVSFTTLVICRIILGAGEGP 124 F LFSISAIVVGFIVN+V TRWVLL LAV+W+LAQFPMVGTVSFTTL+ICRI+LGAGEGP Sbjct: 70 FFLFSISAIVVGFIVNKVPTRWVLLTLAVVWALAQFPMVGTVSFTTLLICRIVLGAGEGP 129 Query: 125 AFSVAAHAIYKWFPDEKRTLPTAILSQGSAFGVILAVPALNWIIVNHSWHHAFGALGIVG 184 AFSVAAHAIYKWFPDEKRTLPTAILSQGSAFGVILAVPALNW+IVNHSWH+AFGALG+VG Sbjct: 130 AFSVAAHAIYKWFPDEKRTLPTAILSQGSAFGVILAVPALNWVIVNHSWHYAFGALGVVG 189 Query: 185 LIWAVAWFALGKEGPLVSTSAVTADEPRIPYLKLLTSRTFIGCVVATFGAYWALSLGLTW 244 LIW AW ALGKEGPL T + A E +IPYL+LLTSRTF+GCV ATFGAYWALSLGLTW Sbjct: 190 LIWVCAWLALGKEGPLEDTHTLAATETKIPYLQLLTSRTFVGCVAATFGAYWALSLGLTW 249 Query: 245 FTSFIIEGLGFSQHQAGFVSILPWIFGATIVLLTGWISQLMLTRGFTTRGARGVLGSVPL 304 FT FII+GLGFSQ QAG++S LPW+FGATIV+LTGWISQLM+ RG TTR ARGVLGSVPL Sbjct: 250 FTPFIIKGLGFSQSQAGWISTLPWVFGATIVILTGWISQLMMARGSTTRVARGVLGSVPL 309 Query: 305 IVGGAILAMLPYAPPGGIMIALLVIGSGLCGSIYVVCPPMLGEFTPVSQRGAIIAIYGAL 364 +VGG ILA +PY G+ +ALLV+G+GLCG+IYVVCPPMLGEFTP SQRGAI+AIYGAL Sbjct: 310 MVGGLILAAMPYVQGAGLQLALLVVGTGLCGAIYVVCPPMLGEFTPSSQRGAILAIYGAL 369 Query: 365 YTISGILAPMVMGNVIQHAATPMAGYMSGFTINAAIMAGSGLLGLLLLWPNTERARLT-G 423 YT+SGI+AP VMG VIQ A + + GYM+GFTINA IM GSGLLGL LLWPN+E+ARLT Sbjct: 370 YTLSGIIAPAVMGTVIQRAGSMLDGYMTGFTINAVIMVGSGLLGLALLWPNSEKARLTRA 429 Query: 424 TSQPAGTIKGAMSPT 438 + A +KGA+SPT Sbjct: 430 AAPQAAALKGAVSPT 444